Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0013310 | OGI:04011900 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:22548962-22551593 | ||||||||
| Gene Symbol | SDRLK-26, SDRLK-27 | ||||||||||
| DNA seq | acagttgctcaccatggctcttctcatttttgtagtactactattcgccttaagcatcccagcaagttctgccacgatcgacaccatctcaattggcacggcgttggccaaaaacgataagcttgtctcagaaaatcgcaggtacgcacttggcttctttgagacacaaagaaaagcatctcagaaaactagcaagtggtacttaggaatttggttcaaccaggttcccaagctaactcctgcatgggttgcaaatagggataagccaattgatgatcccacatcagtggagctaacaatcttccatgatggaaatcttgccatcttaaaccagtcaacaaagtccatcgtttggtctacacaagctaatatcactgccaacaacaccgttgctacgctattgaatagtggaaatctcatcctaacagacttgtcaaactcattagaagttttttggcagagctttgactaccccacagatacattttttcctggggcaaagcttggatgggacaaggtcacaggccttaaccgtcagattatttcttggaaaaactcaattgacccagctaccggttcctattgcaaagagttagacccttctggtgttgatcagtacttgcttttgccattgaattcctccacaccgtattggtctaccggtgcatggaacggcgattacttctcctcaatatatcccggagatgaaaagccatactatttttaattcatcatttgttgataatgatcaagagaagtactttagatatgatttgctagatgaaaggactgttagtcgtcagatattagacatcggaggtcaggaaaagatgttcctttggcttcaggactcaaaagattggacactgatctatgcccaacctaaagctccgtgtgatgtctatgcaatttgtgggcctttcacagtctgcatcgataatgagcttccacattgcaagtgtataaagggcttcaccgtaacatcactcgaggattgggaactggaagatcgaacagatggatgctcaagaaatactccaatagactgcattaacaacaaaaccacaacacattcaactgatatgttctattctatgccatgcgttagattgcccccaaatgcccataatgtggaaagtgtAaaaagttcaagtgagtgcatgcaagtttgcttaactaattgctcttgcactgcttattcattcatcaatggtggatgctctatttggcacaatgaattgcttaacataagaaaagatcaatgtagtgaaaatagcaatacggatggagaagctctttacctacggctagctacaaaagaattttatagtgcaggcgttgatagtagaggaatggttattggacttgctatttttgcaagttttgctttattatgtttgctaccactaatcctactactggtgagacggagtaaaactaagttctcaggtgacagattgaaagattcccagttttgcaatggaattatttcatttgaatacattgatttgcaacgtgcaactacaaatttcatggagagacttggaggaggtagctttggttctgtatttagggggtctctaagtgattccacaacaatagcagtgaaaaggcttgaccatgcatgccaaattccacaaggagataagcagtttagggctgaagtgagctcaattggaaccattcaacacatcaatttagttaaattgatcggcttctgttgtgagggtggcagaagattgcttgtttatgagcacatgtcaaatcgttctctcgatctccaattatttcagagcaatactacaatatcctggaatactaggtatcaaatagccattggaattgctagaggattgtcttacttacacgaaagctgtcaagattgtatcatacattgtgatattaaaccagaaaacatccttctagatgatttattcattccaaaaattgctgattttggtatggcaaagcttttgggaagggattttagccgagttttgacaacggtgagaggaactgcaggttaccttgcacctgaatggattagtggtgttcctataacaccaaaagtcgatgtttatagctatgggatggtcttgctagaaataatatcaggaagaaggaactcatatacctcatctccttgtgttggtgaccatgatgattattttccagtgcttgtggtccgtaagcttcttgatggagatatatgtggtttggttgattatagattacatggtgacatcaacataaaagaggccgaaacagcttgcaaggttgcgtgttggtgcattcaggataatgagtttaatcgaccaacaatggatgaagtggttcatattctcgagggtctagttgaaattgacatacccccgatgccgaggctacttgaagcaattgtagctggaagctcaaatccaacatgtacctcatctagttttttcggatcaattcgagaatccttgtaaatatttatagttccttttctcctacaaatatacatacacgtatatatattaggaaatggcatgaacccaacctctacatccaaccatatgtacccagccaaactacaaatatatatgtatgcatgagtgacggactgatgctatgtgcagctattattgttgac
More
|
||||||||||
| CDS seq | atgaaaagccatactatttttaattcatcatttgttgataatgatcaagagaagtactttagatatgatttgctagatgaaaggactgttagtcgtcagatattagacatcggaggtcaggaaaagatgttcctttggcttcaggactcaaaagattggacactgatctatgcccaacctaaagctccgtgtgatgtctatgcaatttgtgggcctttcacagtctgcatcgataatgagcttccacattgcaagtgtataaagggcttcaccgtaacatcactcgaggattgggaactggaagatcgaacagatggatgctcaagaaatactccaatagactgcattaacaacaaaaccacaacacattcaactgatatgttctattctatgccatgcgttagattgcccccaaatgcccataatgtggaaagtgtAaaaagttcaagtgagtgcatgcaagtttgcttaactaattgctcttgcactgcttattcattcatcaatggtggatgctctatttggcacaatgaattgcttaacataagaaaagatcaatgtagtgaaaatagcaatacggatggagaagctctttacctacggctagctacaaaagaattttatagtgcaggcgttgatagtagaggaatggttattggacttgctatttttgcaagttttgctttattatgtttgctaccactaatcctactactggtgagacggagtaaaactaagttctcaggtgacagattgaaagattcccagttttgcaatggaattatttcatttgaatacattgatttgcaacgtgcaactacaaatttcatggagagacttggaggaggtagctttggttctgtatttagggggtctctaagtgattccacaacaatagcagtgaaaaggcttgaccatgcatgccaaattccacaaggagataagcagtttagggctgaagtgagctcaattggaaccattcaacacatcaatttagttaaattgatcggcttctgttgtgagggtggcagaagattgcttgtttatgagcacatgtcaaatcgttctctcgatctccaattatttcagagcaatactacaatatcctggaatactaggtatcaaatagccattggaattgctagaggattgtcttacttacacgaaagctgtcaagattgtatcatacattgtgatattaaaccagaaaacatccttctagatgatttattcattccaaaaattgctgattttggtatggcaaagcttttgggaagggattttagccgagttttgacaacggtgagaggaactgcaggttaccttgcacctgaatggattagtggtgttcctataacaccaaaagtcgatgtttatagctatgggatggtcttgctagaaataatatcaggaagaaggaactcatatacctcatctccttgtgttggtgaccatgatgattattttccagtgcttgtggtccgtaagcttcttgatggagatatatgtggtttggttgattatagattacatggtgacatcaacataaaagaggccgaaacagcttgcaaggttgcgtgttggtgcattcaggataatgagtttaatcgaccaacaatggatgaagtggttcatattctcgagggtctagttgaaattgacatacccccgatgccgaggctacttgaagcaattgtagctggaagctcaaatccaacatgtacctcatctagttttttcggatcaattcgagaatccttgtaa
More
|
||||||||||
| Protein seq | MKSHTIFNSSFVDNDQEKYFRYDLLDERTVSRQILDIGGQEKMFLWLQDSKDWTLIYAQPKAPCDVYAICGPFTVCIDNELPHCKCIKGFTVTSLEDWELEDRTDGCSRNTPIDCINNKTTTHSTDMFYSMPCVRLPPNAHNVESVKSSSECMQVCLTNCSCTAYSFINGGCSIWHNELLNIRKDQCSENSNTDGEALYLRLATKEFYSAGVDSRGMVIGLAIFASFALLCLLPLILLLVRRSKTKFSGDRLKDSQFCNGIISFEYIDLQRATTNFMERLGGGSFGSVFRGSLSDSTTIAVKRLDHACQIPQGDKQFRAEVSSIGTIQHINLVKLIGFCCEGGRRLLVYEHMSNRSLDLQLFQSNTTISWNTRYQIAIGIARGLSYLHESCQDCIIHCDIKPENILLDDLFIPKIADFGMAKLLGRDFSRVLTTVRGTAGYLAPEWISGVPITPKVDVYSYGMVLLEIISGRRNSYTSSPCVGDHDDYFPVLVVRKLLDGDICGLVDYRLHGDINIKEAETACKVACWCIQDNEFNRPTMDEVVHILEGLVEIDIPPMPRLLEAIVAGSSNPTCTSSSFFGSIRESL |
||||||||||
| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0013310 | OsLiXu_04g0013310.01 | Chr04 | 22548962 | 22551593 | + | NAM | ||
| CDS seq | atgaaaagccatactatttttaattcatcatttgttgataatgatcaagagaagtactttagatatgatttgctagatgaaaggactgttagtcgtcagatattagacatcggaggtcaggaaaagatgttcctttggcttcaggactcaaaagattggacactgatctatgcccaacctaaagctccgtgtgatgtctatgcaatttgtgggcctttcacagtctgcatcgataatgagcttccacattgcaagtgtataaagggcttcaccgtaacatcactcgaggattgggaactggaagatcgaacagatggatgctcaagaaatactccaatagactgcattaacaacaaaaccacaacacattcaactgatatgttctattctatgccatgcgttagattgcccccaaatgcccataatgtggaaagtgtAaaaagttcaagtgagtgcatgcaagtttgcttaactaattgctcttgcactgcttattcattcatcaatggtggatgctctatttggcacaatgaattgcttaacataagaaaagatcaatgtagtgaaaatagcaatacggatggagaagctctttacctacggctagctacaaaagaattttatagtgcaggcgttgatagtagaggaatggttattggacttgctatttttgcaagttttgctttattatgtttgctaccactaatcctactactggtgagacggagtaaaactaagttctcaggtgacagattgaaagattcccagttttgcaatggaattatttcatttgaatacattgatttgcaacgtgcaactacaaatttcatggagagacttggaggaggtagctttggttctgtatttagggggtctctaagtgattccacaacaatagcagtgaaaaggcttgaccatgcatgccaaattccacaaggagataagcagtttagggctgaagtgagctcaattggaaccattcaacacatcaatttagttaaattgatcggcttctgttgtgagggtggcagaagattgcttgtttatgagcacatgtcaaatcgttctctcgatctccaattatttcagagcaatactacaatatcctggaatactaggtatcaaatagccattggaattgctagaggattgtcttacttacacgaaagctgtcaagattgtatcatacattgtgatattaaaccagaaaacatccttctagatgatttattcattccaaaaattgctgattttggtatggcaaagcttttgggaagggattttagccgagttttgacaacggtgagaggaactgcaggttaccttgcacctgaatggattagtggtgttcctataacaccaaaagtcgatgtttatagctatgggatggtcttgctagaaataatatcaggaagaaggaactcatatacctcatctccttgtgttggtgaccatgatgattattttccagtgcttgtggtccgtaagcttcttgatggagatatatgtggtttggttgattatagattacatggtgacatcaacataaaagaggccgaaacagcttgcaaggttgcgtgttggtgcattcaggataatgagtttaatcgaccaacaatggatgaagtggttcatattctcgagggtctagttgaaattgacatacccccgatgccgaggctacttgaagcaattgtagctggaagctcaaatccaacatgtacctcatctagttttttcggatcaattcgagaatccttgtaa
More
|
|||||||
| Protein seq | MKSHTIFNSSFVDNDQEKYFRYDLLDERTVSRQILDIGGQEKMFLWLQDSKDWTLIYAQPKAPCDVYAICGPFTVCIDNELPHCKCIKGFTVTSLEDWELEDRTDGCSRNTPIDCINNKTTTHSTDMFYSMPCVRLPPNAHNVESVKSSSECMQVCLTNCSCTAYSFINGGCSIWHNELLNIRKDQCSENSNTDGEALYLRLATKEFYSAGVDSRGMVIGLAIFASFALLCLLPLILLLVRRSKTKFSGDRLKDSQFCNGIISFEYIDLQRATTNFMERLGGGSFGSVFRGSLSDSTTIAVKRLDHACQIPQGDKQFRAEVSSIGTIQHINLVKLIGFCCEGGRRLLVYEHMSNRSLDLQLFQSNTTISWNTRYQIAIGIARGLSYLHESCQDCIIHCDIKPENILLDDLFIPKIADFGMAKLLGRDFSRVLTTVRGTAGYLAPEWISGVPITPKVDVYSYGMVLLEIISGRRNSYTSSPCVGDHDDYFPVLVVRKLLDGDICGLVDYRLHGDINIKEAETACKVACWCIQDNEFNRPTMDEVVHILEGLVEIDIPPMPRLLEAIVAGSSNPTCTSSSFFGSIRESL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.693136 | 0.0 | 0.083990 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0420033 | RBH | 2.471982 | 1.545033 | 0.104076 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34290 | RBH | 1.672658 | 1.076773 | 0.006641 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0420033 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013120 | RBH | 0.040554 | 0.0 | 0.224593 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013940 | SBH | 0.178881 | 0.000000 | 0.182299 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013650 | RBH | 4.383222 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013320 | SBH | 0.019342 | 0.033247 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013610 | SBH | 4.982869 | 1.540870 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0328600 | RBH | 1.6045075 | 0.0063315 | 0.0190585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012520 | SBH | 0.081596 | 0.047716 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0326100 | SBH | 0.2829205 | 0 | 0.585116 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013110 | RBH | 0.187215 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012700 | RBH | 0.738469 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012710 | RBH | 5.715058 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013320 | RBH | 0.075696 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013510 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012670 | SBH | 0.284199 | 0.643363 | 0.235737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012660 | SBH | 0.428041 | 1.303368 | 1.550173 |
