Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0004740 | OGI:04027330 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:8463046-8467938 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcccactccctctgcgtctctctccgccgccgccgccgcctccatccccaccgccttcaaaccctagccgccgtccgctccttctccctctccctctctctctctcgcgccgcctcccactccctccgccgtcgccgccgccgcagccgctgccgcatccatccccgccgccgtcaaaccctagccgccgccgcccacgtccccgccctcccggacgccgccgcggggacggcggggggcgtggaggcggggatctcctgcgagctgttccactccgcggtcgtcgtcgacggcggcgcctgggtgtgggccaagggtgacgggggccgcctcggcctcggggacgagtcctctgccttcgtcccgcgccacaaccccaacctcagcgagctccgcgtcctcgcgctcggcggcacccactccgccgccctgaccgcctccggggaagtcttcacctggtgaggaaaccaccaccacattgctcatttgaaatgcctgagtgagtgctcgctggatgaactgcaagaagaatgcattgcaaatttatggatttggctgctgcatcattcagtttactgtagtctgcaggggctatggtggatttggagctttgggacattatgtttaccatagggaattgttgccaaggaaagtgaatggtccttgggaagggaagatatcacacattgctacccgtggagcacatactgcggcaatcactgactcaggttggtctggttcatgcttaatgctgattggtgaagacattatggatcatctgcacaattgaatgttgtggagtacttgcattttgcgattgtcggaccccctcatcagttatattttggactttgcgaacaggtgagctctacaattggggttgtgatgaaggcgatcataggttggggcttggaagtagaggtggtcctggtgcagctggttctctgagtgttccttccaaggtgaatgctctgcctgttccagttgctgctgtagcttgtggtggctttttcacaatggcgctgactcctgagctgataatattgtcctgttgttttagccaccatgggacttggaaattggtgatgcatttatcatacattatacttataggtgtgactatgatatgaaggtaatcattctccttttgatgtgaagtttcagtaactgtatctgttagtttcctgttttaaccatatattttgtgcactagggtaaactcactcatggcaaagttgcagaatcgagatttgacaaaagatcctatgatagtaaacctccccctaaaaatttgccattgcctcaaaatggtttacctcaaagcgtggtatggttcagctctgtatgcagatatcttatcttaagtttgcagcttgagtaccttcttccatcgtcttttaaatggacattaattttattttaTtttgtactgcttgattattttttgtgtgaaccataatctttgttagtatattcaaccttgctagaaaaaagtttgattatgaaagacattgcaccatacaactacatggaagtcaaaatacAaaaaaaggctaaactgatataaataccagtattgcattgcaaataattgagattcgagacaataatggatattaacaagaaattcaaaatgatgcattgtcatttgtgaatgtcatgtcagaataacatgaaacgtattttacttgtctgaattctgaaacggctacaggtttcttgagatcacttcattagaataaccttgataattcttctccatcaagctaatgcatactgtacacagtacagcccttttttgttttgtatatatccttttttaacttggaatagtgaccaatccatatcatcgaatttgtgttggccacaggtgacgcttgtgaaaatggttaatgaaaaggttttgataaaatggcactttcaatctatcgctacatgctataatactatccaggacattttagcgaaactcggatttgataatgacacaatgtccaacttctcgatgtgatgtgggcacaggcacagatcaatgtttttcttagccatgtccacctgagcatttgtttcaattgatttaaagggaaattgaagtattaaattggtggttagcaatattttgtatgccaacaacagctggtttacctgatttaatagatactgttgcaagctgttccatttcatgtttttgcagctcagatatgcactcaattgtggtgatttgctaatctgtgttaatctctattagattatgtgtgcttttcagcacagtagttctttaggaccaaacctttttacattaaacagttaatctgcaatataattaagttattttgaataaattataacattcatgttctgccatttagcaactgacagttttgtttttatttcagagggaaagggaaacttactttgttttctgaaagcgaaaggttgggcaagctcattgagtgtcggtggttgcacttatgggacacaacgctcctcatatgcctatatctttgaaatgtctatccgccttactgattcaggactgaaaaatgtacgtataacttcttatacctagatctttgattgaaatgtctaagcatgttttgaatgagtgaaactccctttcctttttcatatcaaagtattttacatgttgatgtagtgcccgcatggtttagcttgacattaaaatgttgtgcagtccgaatttgaggaacattgctgacaatttcctatcacctatcactgtctgtgttcaccgcaataatttcagatgtaccatcccgtcttgtaactagaaagacgcatgaaagtttgttacatcaatttcagcacttcaattttttgtgaaataccattagaacataaccactttgctgtgatatgaaaaataaatgttttataccttgggaggttgtatggtcatgtcttcttatactatattggtcattgatttcatttgatttgattgactaatgtctctaaatttagctacccttatggtagcccaaggagaattgtatgtttgacggccctgttttatgctgtttgatccctccaggaaaaccagctgccattcaatatggcaatggttcagttgctgggtttttcaacgaggatagtgttacaataggtgatctggttgtgaaagatcaggtatgcactatatatctcagttactgattatctctgatcatatactccaaaatatttgaacaccattgcttcaccgctttagaaattcattggagttacaaaggagccaagccatatactttcatggttgcaaaatttggtgacaatcttggtctcggatttcaggaaataactgtttggagatgcagtgcctgtgtggtaagacagcatgatctatagtggtatgatatactggtagttcggtccattcattacaagctgctctttttcttaaattatttgtgttctttgggcattttgctcaataagggttaatcctcgcaaaatataatctaattcacctcactcctttttaacccgttaaattatcgctatcaccttctatagagttccttgcacggaaacctctgttctgaaaagctgcaaattatttgtagttatggtgtttttttatgcattccatattggccaaagcatcgtcggctatgaccaagtagtctgcacatgtgcaagatttgtggggtttggatatgtattatttctccccactattgtttcctgatgtgccttggtgttgtttcctcattttatttgttccatctgaccggccatgttggttggtatccagttttccctttagttggattccaaaaatatttgatatccccactcaccttctctttgtagtaccttagtcttttatgcagcttgtgtatttcacaattgaccctttgcaggtgaatatttggctttggctggtgaaaaatcaatgcagcggatataatcgaactcgaacttgatacgcattgttccatctgtggtgtaagatccTtttgattgcactatagattttttatttttggtggtctaacgcagtaggctgacactccttttaaccaatatattgattatctattcttggcttggacaatatggagatagtgtgtccggacaagagtagcattatttgtaggtaggacatacaagaagtagatatatttctaatttctaaattgtgaatgtattattaagtgctttagcatgtcataagtagaaatttgctggaatggtagataatcatgcccccttttaaacatagcatgggaattagagtagaatcaggatgctttcctttccttggtAaaaatgttcttgactgcatttcaaaacttagaccatcatctatttcagtgtaataccattattctgcagaaacacacaaaactatcattgaatagatagtcctatatttataaggcatgtaattcttgattcttttaatcaatccaagtgctattttgctgtggttcatgaatctttgcgttacctgtaaagctgtggtttatatatttctttgggagctggattctcttggtaattaactcaatcacctctgtcattggtggattaactgtcttcatgcacctttacgccatacatgctttatgtagtgtgtaggcctcagggataaaaatgtatttaacaatatggtgtAtatacaagcttaggcaaaatttccagatacaaacttactcctttagccttctcctaaaaattgcttactattatttccctggagctgtcctcaattttctcaacaacgctcatattctagatgtattagttatagcaaataatgtgattgctcagcaggaagttcaaggatatctgaatatttgttggcaaatgatgtgttcagtcctaagaatactcttgcactgtttcaggctttggttcgcataa
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| CDS seq | gcccactccctctgcgtctctctccgccgccgccgccgcctccatccccaccgccttcaaaccctagccgccgtccgctccttctccctctccctctctctctctcgcgccgcctcccactccctccgccgtcgccgccgccgcagccgctgccgcatccatccccgccgccgtcaaaccctagccgccgccgcccacgtccccgccctcccggacgccgccgcggggacggcggggggcgtggaggcggggatctcctgcgagctgttccactccgcggtcgtcgtcgacggcggcgcctgggtgtgggccaagggtgacgggggccgcctcggcctcggggacgagtcctctgccttcgtcccgcgccacaaccccaacctcagcgagctccgcgtcctcgcgctcggcggcacccactccgccgccctgaccgcctccggggaagtcttcacctggaaagtgaatggtccttgggaagggaagatatcacacattgctacccgtggagcacatactgcggcaatcactgactcaggtgagctctacaattggggttgtgatgaaggcgatcataggttggggcttggaagtagaggtggtcctggtgcagctggttctctgagtgttccttccaaggtgaatgctctgcctgttccagttgctgctgtagcttgtggtggctttttcacaatggcgctgactcctgagctgataatattgtgtgactatgatatgaagggtaaactcactcatggcaaagttgcagaatcgagatttgacaaaagatcctatgatagtaaacctccccctaaaaatttgccattgcctcaaaatggtttacctcaaagcgtgggaaagggaaacttactttgttttctgaaagcgaaaggttgggcaagctcattgagtgtcggtggttgcacttatgggacacaacgctcctcatatgcctatatctttgaaatgtctatccgccttactgattcaggactgaaaaatcccaaggagaattgtatgtttgacggccctgttttatgctgtttgatccctccaggaaaaccagctgccattcaatatggcaatggttcagttgctgggtttttcaacgaggatagtgttacaataggtgatctggttgtgaaagatcagatacaaacttactcctttagccttctcctaaaaattgcttactattatttccctggagctgtcctcaattttctcaacaacgctcatattctagatgtattagttatagcaaataatgtgattgctcagcaggaagttcaaggatatctgaatatttgttggcaaatgatgtgttcagtcctaagaatactcttgcactgtttcaggctttggttcgcataa
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| Protein seq | AHSLCVSLRRRRRLHPHRLQTLAAVRSFSLSLSLSRAASHSLRRRRRRSRCRIHPRRRQTLAAAAHVPALPDAAAGTAGGVEAGISCELFHSAVVVDGGAWVWAKGDGGRLGLGDESSAFVPRHNPNLSELRVLALGGTHSAALTASGEVFTWKVNGPWEGKISHIATRGAHTAAITDSGELYNWGCDEGDHRLGLGSRGGPGAAGSLSVPSKVNALPVPVAAVACGGFFTMALTPELIILCDYDMKGKLTHGKVAESRFDKRSYDSKPPPKNLPLPQNGLPQSVGKGNLLCFLKAKGWASSLSVGGCTYGTQRSSYAYIFEMSIRLTDSGLKNPKENCMFDGPVLCCLIPPGKPAAIQYGNGSVAGFFNEDSVTIGDLVVKDQIQTYSFSLLLKIAYYYFPGAVLNFLNNAHILDVLVIANNVIAQQEVQGYLNICWQMMCSVLRILLHCFRLWFA |
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| Function | RCC1 domain-containing protein RUG3, mitochondrial [UniProtKB/Swiss-Prot:Q9FJG9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0004740 | OsLiXu_04g0004740.01 | Chr04 | 8463046 | 8467938 | + | NAM | ||
| CDS seq | gcccactccctctgcgtctctctccgccgccgccgccgcctccatccccaccgccttcaaaccctagccgccgtccgctccttctccctctccctctctctctctcgcgccgcctcccactccctccgccgtcgccgccgccgcagccgctgccgcatccatccccgccgccgtcaaaccctagccgccgccgcccacgtccccgccctcccggacgccgccgcggggacggcggggggcgtggaggcggggatctcctgcgagctgttccactccgcggtcgtcgtcgacggcggcgcctgggtgtgggccaagggtgacgggggccgcctcggcctcggggacgagtcctctgccttcgtcccgcgccacaaccccaacctcagcgagctccgcgtcctcgcgctcggcggcacccactccgccgccctgaccgcctccggggaagtcttcacctggaaagtgaatggtccttgggaagggaagatatcacacattgctacccgtggagcacatactgcggcaatcactgactcaggtgagctctacaattggggttgtgatgaaggcgatcataggttggggcttggaagtagaggtggtcctggtgcagctggttctctgagtgttccttccaaggtgaatgctctgcctgttccagttgctgctgtagcttgtggtggctttttcacaatggcgctgactcctgagctgataatattgtgtgactatgatatgaagggtaaactcactcatggcaaagttgcagaatcgagatttgacaaaagatcctatgatagtaaacctccccctaaaaatttgccattgcctcaaaatggtttacctcaaagcgtgggaaagggaaacttactttgttttctgaaagcgaaaggttgggcaagctcattgagtgtcggtggttgcacttatgggacacaacgctcctcatatgcctatatctttgaaatgtctatccgccttactgattcaggactgaaaaatcccaaggagaattgtatgtttgacggccctgttttatgctgtttgatccctccaggaaaaccagctgccattcaatatggcaatggttcagttgctgggtttttcaacgaggatagtgttacaataggtgatctggttgtgaaagatcagatacaaacttactcctttagccttctcctaaaaattgcttactattatttccctggagctgtcctcaattttctcaacaacgctcatattctagatgtattagttatagcaaataatgtgattgctcagcaggaagttcaaggatatctgaatatttgttggcaaatgatgtgttcagtcctaagaatactcttgcactgtttcaggctttggttcgcataa
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| Protein seq | AHSLCVSLRRRRRLHPHRLQTLAAVRSFSLSLSLSRAASHSLRRRRRRSRCRIHPRRRQTLAAAAHVPALPDAAAGTAGGVEAGISCELFHSAVVVDGGAWVWAKGDGGRLGLGDESSAFVPRHNPNLSELRVLALGGTHSAALTASGEVFTWKVNGPWEGKISHIATRGAHTAAITDSGELYNWGCDEGDHRLGLGSRGGPGAAGSLSVPSKVNALPVPVAAVACGGFFTMALTPELIILCDYDMKGKLTHGKVAESRFDKRSYDSKPPPKNLPLPQNGLPQSVGKGNLLCFLKAKGWASSLSVGGCTYGTQRSSYAYIFEMSIRLTDSGLKNPKENCMFDGPVLCCLIPPGKPAAIQYGNGSVAGFFNEDSVTIGDLVVKDQIQTYSFSLLLKIAYYYFPGAVLNFLNNAHILDVLVIANNVIAQQEVQGYLNICWQMMCSVLRILLHCFRLWFA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.451123 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0226400 | RBH | 2.617555 | 2.148704 | 4.810573 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g15550 | RBH | 2.846395 | 2.775370 | 0.760435 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0226400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004940 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005580 | SBH | 0.067250 | 0.901504 | 1.691618 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005190 | RBH | 2.018160 | 2.749015 | 12.257821 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005010 | SBH | 0.000000 | 0.018597 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005000 | RBH | 0.493003 | 0.281671 | 1.735155 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004800 | RBH | 0.112630 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005100 | SBH | 0.101089 | 0.370662 | 0.578283 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004920 | SBH | 1.695326 | 36.677280 | 6.392571 |
