Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0003700 | OGI:04020690 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:6573320-6576563 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcgtcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgccggcgaatccccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggCaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctgcccccgccagcgcttgaatacactcaaccgatccaacatcctccacttgcgccggcgagagccttcctccactccagcgcctcaccgtacactccaccgtagctcggtcatccttagtcgcacaccgatacacgaaggcgaggtcggagcccctggtgccgccaccgagaggcaattcgccgttgcggccgcgctcgtcgcgcaaataccggaacgcaagtggtccttcctaccgccgcaagcgaggagttgcgtcgctacatgcacccccaaggtcttcctccaccgatctgtcctgtaactacaacgattggctacaactcttgttcatcgcaatcccttttcttgttccttctagctttacaaattttgagggagattgaaggcgacctgtcgggttcaggttctgcttggcgcatatgttctgcatgaatacaatacgcagaacaaactcatgattggttcctcggccttgctaggaacatgcaaatgctgatgtgttttggttgctcagatcctcagtgggatttcatcaacgacaaacattgatagtggttctgacaatattcatgtatagtggttcgatctacattaggtagtactctggatcaattgaatgctcaaaaaaatattttaatcaacatttgtgatctgaatgtaataaagtttatcacgactcacctttgcagctcggcccggtaatgcaggaagctttacatcaccatcgcttgcagtgacaagtaaataatacactcatgttcgcttcttttgcaaagctattatgccgctgccattaattgctaattgtatatctctgaaattaatttatacagatcgatggtatgtaacagcttttaagcttgtgatttcttcactatatacatgtactgtttgagttaactaattctaatttattggcaaacaccgtagggaataccactaatttaagtgctctcgagttaaagaagatagcaagctcggatgatgtacgctttgctcaattgtaagcagtagcaagctaggttcaacagaaccatgagtacaagcagcggaaggatgcatcaatctacaactgccacaggtgatgtaatgctctcaaattttttgcaaaagaaaaaaaaaaacctgaagcggtgccacccgtaatgacatttgtgcaccaagtatttcactgcagttttactgcaatattcagggtttgcattctagaaattggggttttttccatggggggagggggcgaaagaaccaaaatcactgaatttatttgaaaaattgatgaattttgaatgatttagaataagctttgaccaaattcacaaaacatgaaaaaaggagaaatttcgggtgagatatatgcttgccggtggagagggggcaaaattttgaaattttgttccgaaattgcaatcacgggcaagatttccctaatcgcaatttccccattgcaatgttgagcttgcttttagctgtcactctagctggtaatcacttatttcggatttgtttcaacggttggtttgacatgagcctatcagttgaaatgtcctcaagcttaaatgtaagcgtctctttcagtttgtatgtatgcacatataactccataggtcaagagagtttattctagcagacttaaatataatgatatcccctttgtatataccaatgatcaattttggagctcaggacaaggaactatggcttcatttccttaaaaagtgcatcagttgaatccagtgtatattctacaagttataagcatggatttgatgtttctccctgataatttgcattgtttttgggaagtttgaatatttgctttgtgctgatgacttctaattactaatgatgtaattcataaattttatccatcagcatatgcttgcttggacggtttgttatttctttttatttggacatacgtagtttgcttgaaaattttgatgtggctaaaagagcatttggtttcttaggaagatgcctgatgctaatgtcttctcaagcttttggattgtaaggtgcttttcatgtttttaatccagtgctactatccatgttttaaatccttttcatcaccattgtggatatattatttatttgtagcttcacgaaaaagtgtggactccaggattaaattaaatcttaaaaagtatacgctattccaatttcagattatgccttttccatgatttatgtttcccttttccagtctaatagtggaaccctttccttgtgggaattcatgaaagatattggtctccagattttaagattggtagatcctttcgtggctgccacttcaactgcaggtgtgtgcatagtttagcaatatgaccactttagattaatattgtggtcaaggaaaatatagaggcgttttgacaaatgttgtgttttggaatgttcacacttgctatctacttttttacttcaattaaggcaactatagacaatattctttttgaaattatatgtgatgaccatttcttacaagtgaaatggatgtaaatttgtgttttgtagatcacgtgaacttcgtggactcacggcaggagctgtatacacctcattggtgatcatgtaaatgctatttttagttgctggccatgagggatatatttgaagtattgttggtgaagatctgagtttttttttcctgataagatattgtaggctgtggggtttaattcaataccataaatatcttgctttgagcttttcaagtgtttatcaagctatgacaaattatatgtttggtattgttagctgctttgcattttttattgtttaaaggagtatgttaagtt
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| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcgtcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgccggcgaatccccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggCaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctgcccccgccagcgcttgaatacactcaaccgatccaacatcctccacttgcgccggcgagagccttcctccactccagcgcctcaccgtacactccaccgtagctcggtcatccttagtcgcacaccgatacacgaaggcgaggtcggagcccctggtgccgccaccgagaggcaattcgccgttgcggccgcgctcgtcgcgcaaataccggaacgcaagtggtccttcctaccgccgcaagcgaggagttgcgtcgctacatgcacccccaaggtcttcctccaccgatctgtcctatcctcagtgggatttcatcaacgacaaacattgatagtggttctgacaatattcatgtatagtggttcgatctacattagtttatcacgactcacctttgcagctcggcccggtaatgcaggaagctttacatcaccatcgcttgcagtgacaaggaataccactaatttaagtgctctcgagttaaagaagatagcaagctcggatgatgtacgctttgctcaattgaagatgcctgatgctaatgtcttctcaagcttttggatttctaatagtggaaccctttccttgtgggaattcatgaaagatattggtctccagattttaagattggtagatcctttcgtggctgccacttcaactgcagatcacgtgaacttcgtggactcacggcaggagctgtatacacctcattggtga
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPPNRPRVLAPPSSPAASSLLLAAGESPRLLASPPHPRIPAVSSLRAHPPSSSRRGNEVVPFRCHPRCPRRRLGHPQPPPEPWSSLEPTSSPVAAGAEFFPIRGGRRSPPLPPTKSRSSPTAACPRQRLNTLNRSNILHLRRREPSSTPAPHRTLHRSSVILSRTPIHEGEVGAPGAATERQFAVAAALVAQIPERKWSFLPPQARSCVATCTPKVFLHRSVLSSVGFHQRQTLIVVLTIFMYSGSIYISLSRLTFAARPGNAGSFTSPSLAVTRNTTNLSALELKKIASSDDVRFAQLKMPDANVFSSFWISNSGTLSLWEFMKDIGLQILRLVDPFVAATSTADHVNFVDSRQELYTPHW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0003700 | OsLiXu_04g0003700.02 | Chr04 | 6573320 | 6576563 | + | NAM | ||
| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcgtcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgccggcgaatccccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggCaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctgcccccgccagcgcttgaatacactcaaccgatccaacatcctccacttgcgccggcgagagccttcctccactccagcgcctcaccgtacactccaccgtagctcggtcatccttagtcgcacaccgatacacgaaggcgaggtcggagcccctggtgccgccaccgagaggcaattcgccgttgcggccgcgctcgtcgcgcaaataccggaacgcaagtggtccttcctaccgccgcaagcgaggagttgcgtcgctacatgcacccccaaggtcttcctccaccgatctgtcctgaagatgcctgatgctaatgtcttctcaagcttttggatttctaatagtggaaccctttccttgtgggaattcatgaaagatattggtctccagattttaagattggtagatcctttcgtggctgccacttcaactgcagatcacgtgaacttcgtggactcacggcaggagctgtatacacctcattggtga
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPPNRPRVLAPPSSPAASSLLLAAGESPRLLASPPHPRIPAVSSLRAHPPSSSRRGNEVVPFRCHPRCPRRRLGHPQPPPEPWSSLEPTSSPVAAGAEFFPIRGGRRSPPLPPTKSRSSPTAACPRQRLNTLNRSNILHLRRREPSSTPAPHRTLHRSSVILSRTPIHEGEVGAPGAATERQFAVAAALVAQIPERKWSFLPPQARSCVATCTPKVFLHRSVLKMPDANVFSSFWISNSGTLSLWEFMKDIGLQILRLVDPFVAATSTADHVNFVDSRQELYTPHW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0003700 | OsLiXu_04g0003700.01 | Chr04 | 6573320 | 6576563 | + | NAM | ||
| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcgtcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgccggcgaatccccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggCaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctgcccccgccagcgcttgaatacactcaaccgatccaacatcctccacttgcgccggcgagagccttcctccactccagcgcctcaccgtacactccaccgtagctcggtcatccttagtcgcacaccgatacacgaaggcgaggtcggagcccctggtgccgccaccgagaggcaattcgccgttgcggccgcgctcgtcgcgcaaataccggaacgcaagtggtccttcctaccgccgcaagcgaggagttgcgtcgctacatgcacccccaaggtcttcctccaccgatctgtcctatcctcagtgggatttcatcaacgacaaacattgatagtggttctgacaatattcatgtatagtggttcgatctacattagtttatcacgactcacctttgcagctcggcccggtaatgcaggaagctttacatcaccatcgcttgcagtgacaaggaataccactaatttaagtgctctcgagttaaagaagatagcaagctcggatgatgtacgctttgctcaattgaagatgcctgatgctaatgtcttctcaagcttttggatttctaatagtggaaccctttccttgtgggaattcatgaaagatattggtctccagattttaagattggtagatcctttcgtggctgccacttcaactgcagatcacgtgaacttcgtggactcacggcaggagctgtatacacctcattggtga
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPPNRPRVLAPPSSPAASSLLLAAGESPRLLASPPHPRIPAVSSLRAHPPSSSRRGNEVVPFRCHPRCPRRRLGHPQPPPEPWSSLEPTSSPVAAGAEFFPIRGGRRSPPLPPTKSRSSPTAACPRQRLNTLNRSNILHLRRREPSSTPAPHRTLHRSSVILSRTPIHEGEVGAPGAATERQFAVAAALVAQIPERKWSFLPPQARSCVATCTPKVFLHRSVLSSVGFHQRQTLIVVLTIFMYSGSIYISLSRLTFAARPGNAGSFTSPSLAVTRNTTNLSALELKKIASSDDVRFAQLKMPDANVFSSFWISNSGTLSLWEFMKDIGLQILRLVDPFVAATSTADHVNFVDSRQELYTPHW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.172242 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g11850 | RBH | 0.469924 | 0.021757 | 0.032724 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003790 | RBH | 0.301545 | 5.843547 | 4.312653 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004310 | RBH | 0.220672 | 0.684101 | 1.674781 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003830 | RBH | 0.166664 | 0.000000 | 4.459855 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003940 | SBH | 0.279674 | 0.069297 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003810 | RBH | 0.832741 | 5.294008 | 7.245941 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0095200 | SBH | 0.9298215 | 4.078635 | 2.1897635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0098900 | SBH | 0.7842595 | 2.811332 | 3.099913 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003760 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004010 | SBH | 0.470000 | 1.428711 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003800 | SBH | 0.000000 | 5.051398 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0015790 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004050 | RBH | 0.000000 | 0.000000 | 0.309005 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003810 | RBH | 0.000000 | 0.0 | 5.567215 |
