Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0003830 | OGI:04020690 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:5983009-5986301 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaatcacgcgatgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatcccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctgacccgccagcgcttgaatacactcaaccgatccaacatcctccacttgcgccggcgagagccttcctccactccagcgcctcaccgtacactccaccgtagctcggtcatccttagtcgcacaccgatacacgaaggcgaggtcggagcccctggtgccgccacgagcgagaggcaattcgccgttgcggccgcgctcgtcgcgcaaataccggaacgcaagtggtccctttcctaccgccgcaagcgaggagttgcgtcgctacatgcacccccaaggtcttcctccaccgatctgtcctgtaactacaacgattggctacaactcttgttcatcgcaatcccttttcttgttccttctagctttacaaattttgagggagattgaaggcgacctgtccgggttcaggttctgcttggcgcatatgttctgcatgaatacaatacgcagaacaaactcatgattggttcctcggccttgctaggaacatgcaaatgctgatgtgatgttttggttgctcagatccatcagtgggatttcatcaacgacaaacattgatagtggttctgacaaatattcatgtatagtggttcgatctacattaggtagtactctggatcaattgaatgctcaaaaaaatattttaatcaacatttgtgatctgaatgtaataaagtttatcacgactcacctttgcagctcggcccggtaatgcaggaagctttacatcaccatcgcttgcagtgacaagtaaataatacacatcatgttcgcttcttttgcaaagctattatgccgctgccagttaattgctaattgtatatctctgaaattaatttatacagatcgatggtatgtaacagcttttaagcttgtgatttcttcactatatatcatgtactgtttgagttaactaattctaatttactggcaaacaccgtagggaataccactaatttaagtgctctcgagttaaagaagatagcaagctcggatgaggtacgctttgctcaattgtaagcagtagcaagctaaggttcaacagaaccatgagtacaagcagcggaaggatgcatcaatctacaactgccacaggtgatgtaatgctctcaaattttttgcaaaagaaaaaaaaaacctgaagcggtgccacccgtaatgacatttgtgcaccaagtatttcactgcagttttactgcaatattcagggtttgcattctagaaattggggttttttccgtggggggagggggcgaaagaaccaaaatcactgaatttatttgaaaaattgatgaattttgaatgatttagaataagctttgaccaaattcacaaaaacatgaaaaaaggagaaatttcgggtgagatatatgcttgccggtggagagggggcaaaattttgaaaattttgttccgaaattgcaatcacgggcaagatttccctaatcgcaatttccccattgcaatgttgagcttgcttttagctgtcactctagctggtaatcacttaatttcggatttgtttcaacggttggtttgacatgagcctatcaggttgaaatgtcctcaagcttaaatgtaagcgtctctttcagtttgtatgtatgcacatataactccataggtcaagagagttttattctagcagacttaaatataagtgaatatcccctttgtatataccaatgatcaattttggagctcaggacaatggaactatggcttcatttccttaaaaagtgcatcagttgaatccagtgtatattctacaagttataagcatggattttgatgtttctcctctgataatttgcattgtttttgggaagtttgaatatttgctttgtgctgatgacttctaattactaatgatgtaattcataaattttatccatcagcatatgcttgcttggacggtttgttatttctttttatttggacatacgtagtttgcttgaaaattttgatgtggctaaaagagcatttggtttcttaggaagatgcctgatgctaatgtcttctcaagcttttggattgtaaggtgcttttcatgtttttaatccagtgctaatatccatgttttaaatccttttcatcaccattgtggatatattatttatttgtagcttcacgaaaaaagtgtggactccaggattaaattaaatcttaaaaagatatacgctattccaatttcagattatgccttttccatgatttgatatgtttccctttttccagtctaatagtggaaccctttccttgtgggaattccatgaaagatattggtctccagattttaagattggtagatcctttcgtggctgccacttcaactgcaggtgtgtgcatagtttagcaatatgaccactttagattaatattgtggtcaaggaaaatatagaggcgttttgacaaatgttagtgtttctggaatgttcacacttgctatctacttttttacttcaattaaggcaactatagacaatattctttttgaaattatatgtgatgaccatttcttacaagtgaaatggatgtaaatttgtgttttgtagatcacgtgaacttctgtggactcacggcaggagctgtatacacctcattggtgatcatgtaaatgctatttttagttgctggccatgagggatatatttgaagtattgttggtgaagatctgagttttttttcctgataagatattgtaggctgtggggtttaattcaataccataaatacaaatatcttgctttgagcttttcaagtgtttatcaagctatgacaaattatatgtttggtattgttagttgctttgcatttttttattgtttaaaggagtatgttaagtt
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| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatcccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctga
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPPNRPRLLAPPSSPAASSLLLAARRIPRLLASPPHPRIPAVSSLRAHPPSSSRRGNEVVPFRCHPRCPRRRLGHPQPPPEPWSSLEPTSSPVAAGAEFFPIRGGRRSPPLPPTKSRSSPTAA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0003830 | OsCMeo_04g0003830.04 | Chr04 | 5984450 | 5986301 | + | NAM | ||
| CDS seq | atgaggaagatgcctgatgctaatgtcttctcaagcttttggattgtaagtctaatagtggaaccctttccttgtgggaattccatgaaagatattggtctccagattttaagattggtagatcctttcgtggctgccacttcaactgcagatcacgtgaacttctgtggactcacggcaggagctgtatacacctcattggtgatcatgtaa
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| Protein seq | MRKMPDANVFSSFWIVSLIVEPFPCGNSMKDIGLQILRLVDPFVAATSTADHVNFCGLTAGAVYTSLVIM |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0003830 | OsCMeo_04g0003830.01 | Chr04 | 5983009 | 5986301 | + | NAM | ||
| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatcccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctga
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPPNRPRLLAPPSSPAASSLLLAARRIPRLLASPPHPRIPAVSSLRAHPPSSSRRGNEVVPFRCHPRCPRRRLGHPQPPPEPWSSLEPTSSPVAAGAEFFPIRGGRRSPPLPPTKSRSSPTAA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0003830 | OsCMeo_04g0003830.02 | Chr04 | 5983009 | 5986301 | + | NAM | ||
| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatcccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctga
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPPNRPRLLAPPSSPAASSLLLAARRIPRLLASPPHPRIPAVSSLRAHPPSSSRRGNEVVPFRCHPRCPRRRLGHPQPPPEPWSSLEPTSSPVAAGAEFFPIRGGRRSPPLPPTKSRSSPTAA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0003830 | OsCMeo_04g0003830.03 | Chr04 | 5983009 | 5986301 | + | NAM | ||
| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatcccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctga
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPPNRPRLLAPPSSPAASSLLLAARRIPRLLASPPHPRIPAVSSLRAHPPSSSRRGNEVVPFRCHPRCPRRRLGHPQPPPEPWSSLEPTSSPVAAGAEFFPIRGGRRSPPLPPTKSRSSPTAA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0003830 | OsCMeo_04g0003830.05 | Chr04 | 5983069 | 5986214 | + | IsoSeq | ||
| CDS seq | cgccgcgacaacttcgccccccaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatcccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccgga
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| Protein seq | RRDNFAPQIAPASSLLPPPPLPPRSSSPPGESRASSLLLHTHESPPSPRSVRILPPPRDGATRSSPSAATPAAHAG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr04 | 5984550 | 5985694 | + | OsCMeo_04g0003830.02 | OsCMeo_04g0003830.02,OsCMeo_04g0003830.05,OsCMeo_04g0003830.03 | All |
| SE | Chr04 | 5985496 | 5986011 | + | OsCMeo_04g0003830.04 | OsCMeo_04g0003830.01,OsCMeo_04g0003830.04 | All |
| A5 | Chr04 | 5984454 | 5985452 | + | OsCMeo_04g0003830.01 | OsCMeo_04g0003830.01,OsCMeo_04g0003830.04 | All |
| A5 | Chr04 | 5985491 | 5985694 | + | OsCMeo_04g0003830.04 | OsCMeo_04g0003830.02,OsCMeo_04g0003830.04 | All |
| MX | Chr04 | 5984550 | 5986011 | + | OsCMeo_04g0003830.01 | OsCMeo_04g0003830.01,OsCMeo_04g0003830.05,OsCMeo_04g0003830.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.166664 | 0.000000 | 4.459855 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0389500 | RBH | 1.150856 | 2.209819 | 3.123101 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0389500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003790 | RBH | 0.301545 | 5.843547 | 4.312653 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003810 | RBH | 0.832741 | 5.294008 | 7.245941 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003700 | RBH | 0.0 | 0.172242 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004050 | RBH | 0.000000 | 0.000000 | 0.309005 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
