Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0389500 | OGI:04020690 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:19148767-19152021 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCGCGATAACTCCGCCCCCGCCTCCTCGCTCCTCCCCCGCTGCCATAGCCCGCCGCCTCCTCGCTCCTCCTCGCCGCCCGCCCCACGAATCCCCGCGCCTCCTAGCTTCTCCTCCGCGCCCGCGAATCCCCGCCGCCTCCTCGCTCCGCGCGCATCCTCCCTCCTCGCGACGGGGCAGCGAGGTCGTCCCCTTCCGCTGCCACCCCCGCTGCCCACGCCGGAGACGAGGTCGTCCCCAGCCACCGCCGGAGCCGTGGTCTTCCCCGGAGCCGACGTCGTCCCCAGTTGCCGCCGGAGCCGAGTTCTTCCCCATCCGCATTGGATCTGAATGCACCACATATCTTCCCCTCTGGAAATTATTATTTTTGGATGAAATTGACGGAATACCAATGGCTATTGCAACAAGGTAATTTGCCCTCAACCTTTAGCTTTTCAAATCAGAATCAGTTTAATTACTTCTTTGTTTCTTTGCATCATTTTCCCCTTGACTGATGCTTGCACTGATGTACTATGTTGTCATGGGGGATGTTCTAGACGTGAGGACTGGCAAGCCATCTCTTCATATATTTCTTGCTGATATGAGAACGTTCGAGGTATTGCCATGTAAGTGCTATTGCCTATAATGTTCTTTAGACTAAACACAATATTATAATTTTACCTAACACAAGTGCATTGCATGTTGTTCGGGTCAATTTGGAACCAGATAATTGATTTGTATTTCAAGCTCCTCCTGCTGTAGCAGCAGTAAAAAAAATGCTCGAATGTGATTGGGCGACACATGTACATATGCTTTTAAGGTATGCGGGATTATCAGAGTTCTGTTGTTGCTTCATGTCACAAAGGAGAGGACCATTTTATTGGTACCATTTATCCATATCATGATGGCCATGGTAAAGTTGATCCGCACATAGTAGCGTAATCAAATCTCATGCTTACTGTCATAAGTTAGTAACTTTAAACATTTTTTTTGTGATTAAATGATTTACAACCCAATCAAAACACCTTGAATTACTTCAAGGCAAATTAGGAATTACATATCTTGGTAAAGAGCTCATATCATTATTTTATTTTGTTTTTAATTAAAACTTTCATTTTTCCTCAGTAAATCATGAAGTTACAAGATTATTATTTTGGTTTTTTCGTCAACGAACAAATCATTCCATGAGAATGTCAATGTATGCCTGTATCATGCTCAAACACCTCGATCTAATTTTCAGATGATGTTAACGATTGATTGCTGCAGGATAGAGGCATACAAAGTGCAGGCAATAATTATGTTTTTAAGATAGCTCAAAAGAATATTTAGTGAAATTTTATCTGGGGTGAATATGCTGGGATTGCGAGTCCTCCATCTTTAATTGTTTCAGGGTAGAGGCATACAAAGTACAGACAATATTTATTTCAGGAGTTCTGTCCTGAAGCTATTGTTTTTTCTGCAGTCCCTTCAGCGACATCTGGAAACCTAGGATCTCACCTACAAAAATAGGTAATTTTTGCCAACTGCTTGACATTAATTGGAATATCCCCTTTGTATATACCAGTGATCAATTTTGGAGCTCCAGACAATGAAACCATGCCTTAATATCCCTGAAAGAGTGCATTAGGTGAATCCAGTGATTATCCTGGAAGTCATGAGCATGGATTCTGATGCTTCCTATTTCTCCTCCGATAATTTCAATTAAAGACGTGTTTTCTCTAGCATTTTGAATATTGCAGTATGCCAATGACTTAGTTACTAATGATGTAGTGCATAAATTTTATGGCAAGTTCTGTTATTTCTTTTCAATTGGAAGTAATTTGCTTGAAAAGTGGTTAAAGGAGAAAATTTCTAATGCACTGTTTGGTTTCTCAGGAATCCAGGAGTTGGAGCCATTCGAACATGCAGCATGTCTCTTGCTAATGTCTTCCTGAGCTTTCAAATCATAAGGCCCTTGCCTCACTGATCAAAATATTCAGGTCACTAGAGGTTCTAATTTGCTTGCAATCCTTATGGTTTCCACTCATCACAGTGATAAGGCACCATATTCTTATGGCCAGTGCTTCTATGTTCTGAGCTTACTGGTATCCATATTTTTAAGCACTCTATTTCTTTGCTCTGGTTTCTTTTTTTGCAACCAGTTTCTGATGGAACATTTCTTATGGCTAGAAATTGTCACGTAATCTTCAATGCGCTCTAGAAATTTCAGATTGAGCTATTTGAATTTTGCTATGTTAATTTGAATAATACAGTATTCCAAAGCGGCAGTGGATCATTATAACCAACTACCACAAACTATTCAATTGCAGAATTTCTGCATTCCAATTTTTGCATTTCTCAATTTAATCATGTATTTTGGTTTGAGTAATTGCAAAGTAAAATTGATTTTGTAATTGTAAAAATGAATGAATTTTCTGGACAACATTTAATGTGATTTTATCAAAACACAATGAACCTTTTAATTTGTCCGTATAGTTCTGTTTTCTTTTATTTTCAAAAGTAAGATCCTCAGTATAAGCTTTTGTTTGTGGATCTCTTAATAATGAATATTGGGGGTCCAATCCTCTCTTGCTCCACCGTTGGACCAGTAGTAGCAGCAGGTTGGAAGCTGGTGAACACGATCTCAGGGAAGGACACAATGGCGGCTTCGTACGATCTCACATATGACAATTCTATCATTGCCTTAGATTTTACCAACCAAAGGTTAGATGCACCTGCTTGGTAACTGTGAATTTAGATGAAATAAATTTGAAGCAGTTCTTCTGATATAAACTGATGTGATTTCCTATCGAGTTATTAAAAATTATATTTGATGAAATATTTTTCCGAGTCCATCATGCATATTAATTCCTTACTGAATGTGTACTCTTTCTTTTGATTTGGCAGATGCAAGGGGTACTCATTCTTTTGATTTTGTCCAGATGGACAGCTCCAGTCCATAACATTCTATCTACACAGTCAACGACTCAGTTAATAATAAAACTGAAAAAATGTTCTCTTTTATTTTTAAATAAGATTTTCACACAACCTGAAAGTAAGATATCAAAGGAGCACTGGCCTGATATAAATGATTTTTTTCTGACGAATGTGGACTACCAATGTAATGCACATGCCTAAGATATTTAAGGTTTTCTTTTTTCTGCAGTACTTAAAGACTTGTATTTTGTAATATTGTAGGTTAAATCTCAACTTCTGATGTATCTCAAGTGTAAATATGGTCATTGTCATATTGCTAATATTTTGGATTTAATCAAATAAATGATGACCATTGCTGCCC
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| CDS seq | ACCGCGATAACTCCGCCCCCGCCTCCTCGCTCCTCCCCCGCTGCCATAGCCCGCCGCCTCCTCGCTCCTCCTCGCCGCCCGCCCCACGAATCCCCGCGCCTCCTAGCTTCTCCTCCGCGCCCGCGAATCCCCGCCGCCTCCTCGCTCCGCGCGCATCCTCCCTCCTCGCGACGGGGCAGCGAGGTCGTCCCCTTCCGCTGCCACCCCCGCTGCCCACGCCGGAGACGAGGTCGTCCCCAGCCACCGCCGGAGCCGTGGTCTTCCCCGGAGCCGACGTCGTCCCCAGTTGCCGCCGGAGCCGAGTTCTTCCCCATCCGCATTGGATCTGAATGCACCACATATCTTCCCCTCTGGAAATTATTATTTTTGGATGAAATTGACGGAATACCAATGGCTATTGCAACAAGACGTGAGGACTGGCAAGCCATCTCTTCATATATTTCTTGCTGA
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| Protein seq | TAITPPPPPRSSPAAIARRLLAPPRRPPHESPRLLASPPRPRIPAASSLRAHPPSSRRGSEVVPFRCHPRCPRRRRGRPQPPPEPWSSPEPTSSPVAAGAEFFPIRIGSECTTYLPLWKLLFLDEIDGIPMAIATRREDWQAISSYISC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0389500 | OsNip_04t0389500-01 | Chr04 | 19148767 | 19152021 | + | RAP2018-11-26 | ||
| CDS seq | ACCGCGATAACTCCGCCCCCGCCTCCTCGCTCCTCCCCCGCTGCCATAGCCCGCCGCCTCCTCGCTCCTCCTCGCCGCCCGCCCCACGAATCCCCGCGCCTCCTAGCTTCTCCTCCGCGCCCGCGAATCCCCGCCGCCTCCTCGCTCCGCGCGCATCCTCCCTCCTCGCGACGGGGCAGCGAGGTCGTCCCCTTCCGCTGCCACCCCCGCTGCCCACGCCGGAGACGAGGTCGTCCCCAGCCACCGCCGGAGCCGTGGTCTTCCCCGGAGCCGACGTCGTCCCCAGTTGCCGCCGGAGCCGAGTTCTTCCCCATCCGCATTGGATCTGAATGCACCACATATCTTCCCCTCTGGAAATTATTATTTTTGGATGAAATTGACGGAATACCAATGGCTATTGCAACAAGACGTGAGGACTGGCAAGCCATCTCTTCATATATTTCTTGCTGA
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| Protein seq | TAITPPPPPRSSPAAIARRLLAPPRRPPHESPRLLASPPRPRIPAASSLRAHPPSSRRGSEVVPFRCHPRCPRRRRGRPQPPPEPWSSPEPTSSPVAAGAEFFPIRIGSECTTYLPLWKLLFLDEIDGIPMAIATRREDWQAISSYISC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.150856 | 2.209819 | 3.123101 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0389500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003830 | RBH | 0.166664 | 0.000000 | 4.459855 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001460 | RBH | 0.000000 | 0.000000 | 0.890473 |
