Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0021040 | OGI:03044990 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:17839138-17844118 | ||||||||
| Gene Symbol | RLCK110, OsRLCK110, PTK5, OsPTK5 | ||||||||||
| DNA seq | tgagtacaaagaggccaagaccaataaatttcaaaccaagagaaaagaaacaaggaattacagggggtgcaatccttcctggccagtgaccaccggctgcaccaccatctacattttacatcctcatcatcagtcactacacaaaaacattacattgcgggttacggATatatatatattacacttgatatttaggattttacttctccaggcatatgccacacccaaaactcctcgctttggcctggacgtctcctaacgaccttctggggtgaacgcattttactttgcctaagttttccaccatccctctcaccgggccttctccttgctgttctttcctttctcacagcattatcctcctttaccggggctatgggtgccaccgactcatcagagacatcatcggtgacattgaggaggggctctaggtctttcacgacttgacacatgtccggtctatttttggggttaccgctcaggcaccgatacgccaccagggccgccttatgagccgcggtagcggagtactggccctccagggccgggtccatgactcggcttaacttctgtggatccttgagccaggagcgcatgtgttcgactagatgctgctccctgctaggtcgtgtcttgtccacggcccgtcgcccggataggatctctagcagaacgacaccaaagctgtatacgtcgctctttgctgtaaggtgacctggcaaatgataacacgatgcatttggttagaacatttgtaaaaaggatactagtacattataggtttgcaagaggagaaaaagaatcgatggtgttgaaaagatatgtatacatagtataggtgtgtgtatagtgcatatacgtaccggtgaggatgtactccggtgcggcgtagccgtgggtgcccatgacgcgtgtggagacgtgggtgtcgtcgccctccggcccatctttggccagcccaaagtccgacagcttcgccttgtactcctgcacgacgaaacttcaattagcctttttcgatctactaggccgaattaatcactactgggccttctactcggcccacgttagacgatctccaaatatcagttgggctttagcccagtcatgaactactgcgtgcattcgcgcgttcagactcgcgaggacaatcagtcgctgcatcacctactttgtactgtactactagtaacctgagcacttaatttccaacctctgactaatgcaccataaattcgattcgtgtgaacgagtaaagcatcaggtcaactccataaataaatcacgttatgctacgaaaagtaattaggttgatcaatatctctagaagaatttaagtgtaatgaaataataataataattaataacaagtgtaattaccgggtcgagtaggatgttggaggtcttgaagtcgcggtagatgacgggcttctcggcgtcgtgaaggaagacgaggcccttggcggcgccaaccgcgatgttcaaccgggttgaccacgacagcatcgaaggaaactctgaaaataaaaagaaaaagaaaagtaaatataattattacataattcaataataatcctggtcaagattaattaattcgttaaatataagcatcactagaagtatttgcttacttcactttacattactttgcgtgtgtgaggcacagctaaatgcatggctagttgcatatgaccaaacccaaaaaaaaagagagaaaatagcagctgctgaatcgtataccagttaggtggtggaccagtcaaggttttgtgcacaagttgcatgctttgatttgttaatttggtccggccaaacaaaccttttcttaattaatggtttttctggatgattcatactaaatcagtagatcgagtttggatggaaaattcatcaggcactgcgaatgtaaaagcctactttatcaacaactactaccaattattaggtcttattccaactagtttaattagctgctttgcacttaattagctttctctcgatcgatcgtcatcaaatccgcccagcgtccacaggaattagacctaaaaacatgtacttcgtgcatataaatacatatattccctttctggaattgagtagctaacgaacgaattaacctgagaatatatggcatgatcaatgtgaaacggagccaatggagtcaatatgctcatctaagatgagactgtccacaaccacctcatctagctagtttcctttaattcttcttccacatctagctagacttttcgttttgaattttattccaactaaatgcttaatcagtcagagtagaaaattactttcttggagggagatataacggcatatatctagtcagattaagatcagatcaggaaggaggagagggtcagcaatgtcaaaaacaagcagcgattgatgcggccgcaatgtgtatagcataatcgatcaaatcaaacgtagtcgactaatcaattatcaactagctacagctgctgaccactggccagtatgtataccatctatccagcttactagctgtcagtgaagacgatatattgcgcgtgctccatgctggagtggcatgtacgtatggcatatatagctaattatctgctccactagtgcggtcattagggacctaatttctccatataaacaggatttacacagtactatacataaattgcggcgtgtgtgtgaaactttggagcttaataagatgtgtaagcgacaaagaataatatatacattaacctaattattgagtagtgctccctctaatctacttgtaccactggtggagaaaccatctttgatcgatccaccagatttcacaatagccccggttgtattaaaaacctctttagtcccgatttgaaagctccaaggaattttttgatctttagtctcggttggtgttatcaaccgggactaaagatctatttatagtcccggttggtgttaccaaccgggaaaaaagatcaatataaactttactcccggttgtgtttagacccggttggtaacaccaaccgggaaaaaagtcgacataagcggggtagttgcacgcggatcggatcaatacattctcctcctctccttttttaactcatctcctcacagagtcacccttatctttttctctccctcctcccttcctctcctcctctccctcctcctcacctccctccgcaacggcagggcgcagaggcccggccggcccgtgcggcagcgcggcgcgcggagggccgggcgaggcggcgcgctagcggctggcggcctcgcggcggcggccggggacgcggcgggcggcgcgcggcggccgccggccggggtggtggcgcggtgcatggagggccgggcgaggcggcgcgcgggcggctggcggcggagccggggacgcggcgggcggcgcggcggcgggcggtgaggcggcgcgccgccgcggcagtaggccgttcatcttcttcctttttttctttctttttttttaaaatctgtgattcggatctaagacgatttgtgtgtgatgtgaatatgtaatgtatttgtgatgtaatttttttaagattttgttatgtatttagagattgatttgagaatttggagactattcggggatgattgatttgggattttgggatgggatagagtgaatcaatatattaaaaataatgaagaaaagaatagaataaagtagcaacctgagctaccctctttagtaccggttggtgttaccaaccgagactaaagatactctatctttagtcccgattggtaataccaaccgggactaaaaatagatttttactcattgtttttcacccgggactaaagatagcgatctttagtcccggattaatagttccggttggaaaaccgggactacagggggttatgaacagggagtaaagcccctttctccaccagtgtaccataactaattagcagaagttatataattaattaagaaatggagggtgaataattgtacatactcttgaagaggtggttctcgaggctgcccttggccatgtactcgtagacgagcaggcggtgctcgtcctcgcagcagtagccgatgagcttcaccaggttggggtgcctgagctgcccaaggaagatcacctccgactgcatgcatcacaaaaatgttactaattatttgcatggctaataaagttgttactcctaattgattgattaattagaagcaattaagtatagtaagtaaattaaattaccagccattctttgtgaccctgggcgccctcggggtcccagagcttgacggcgatgggctgggccttgaggcccggcttggccttgtcggcgacgttgcccttgtagacggggccgaagccgccctcgccgaggaagttgccgtcgaggaacccctgcgtcgccgccttcagctcccccaccgtgaacacgtgcaggttcgaccccaccagcgacaccgacagctcctgctccgacgccgtgctcatcacgtccgtgaacgacagccgctgcgccgccgccgatgatgctcctccgccgtgcttcgccgccgccgccgccgccgtcctcggccccggccgcaccttccggctccccgccgcgcctcctccgctcaggcatcccctgaacaggctcccccaccctgacctctccttcttcctcgtcatcctgctgctagctgctgatggtgatctctctccgtcctgtgaccaacgacgaggagagatgaatcgatcgatccctgaatccttatcgtgttcttgcgatcgatcgagtggtgaggtggagtcagtattgggagagagagaggggtatatatacatgtgggggaagcgagggggcgcgtgtgtggagagatgaccgcgtgtgcctcggcttacctaccaaccgatagtaaggacatggacatcttcttattcttcttcttcttcctcctcctcctactactactcgactcttccgtccgtgacgtctcctctcttctcgcccgcgt
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| CDS seq | atgtatatatacccctctctctctcccaatactgactccacctcaccactcgatcgatcgcaagaacacgataaggattcagggatcgatcgattcatctctcctcgtcgttggtcacaggacggagagagatcaccatcagcagctagcagcaggatgacgaggaagaaggagaggtcagggtgggggagcctgttcaggggatgcctgagcggaggaggcgcggcggggagccggaaggtgcggccggggccgaggacggcggcggcggcggcggcgaagcacggcggaggagcatcatcggcggcggcgcagcggctgtcgttcacggacgtgatgagcacggcgtcggagcaggagctgtcggtgtcgctggtggggtcgaacctgcacgtgttcacggtgggggagctgaaggcggcgacgcaggggttcctcgacggcaacttcctcggcgagggcggcttcggccccgtctacaagggcaacgtcgccgacaaggccaagccgggcctcaaggcccagcccatcgccgtcaagctctgggaccccgagggcgcccagggtcacaaagaatggctgtcggaggtgatcttccttgggcagctcaggcaccccaacctggtgaagctcatcggctactgctgcgaggacgagcaccgcctgctcgtctacgagtacatggccaagggcagcctcgagaaccacctcttcaagaagtttccttcgatgctgtcgtggtcaacccggttgaacatcgcggttggcgccgccaagggcctcgtcttccttcacgacgccgagaagcccgtcatctaccgcgacttcaagacctccaacatcctactcgacccggagtacaaggcgaagctgtcggactttgggctggccaaagatgggccggagggcgacgacacccacgtctccacacgcgtcatgggcacccacggctacgccgcaccggagtacatcctcaccggtcaccttacagcaaagagcgacgtatacagctttggtgtcgttctgctagagatcctatccgggcgacgggccgtggacaagacacgacctagcagggagcagcatctagtcgaacacatgcgctcctggctcaaggatccacagaagttaagccgagtcatggacccggccctggagggccagtactccgctaccgcggctcataaggcggccctggtggcgtatcggtgcctgagcggtaaccccaaaaatagaccggacatgtgtcaagtcgtgaaagacctagagcccctcctcaatgtcaccgatgatgtctctgatgagtcggtggcacccatagccccggtaaaggaggataatgctgtgagaaaggaaagaacagcaaggagaaggcccggtgagagggatggtggaaaacttaggcaaagtaaaatgcgttcaccccagaaggtcgttaggagacgtccaggccaaagcgaggagttttgggtgtggcatatgcctggagaagtaaaatcctaa
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| Protein seq | MYIYPSLSPNTDSTSPLDRSQEHDKDSGIDRFISPRRWSQDGERSPSAASSRMTRKKERSGWGSLFRGCLSGGGAAGSRKVRPGPRTAAAAAAKHGGGASSAAAQRLSFTDVMSTASEQELSVSLVGSNLHVFTVGELKAATQGFLDGNFLGEGGFGPVYKGNVADKAKPGLKAQPIAVKLWDPEGAQGHKEWLSEVIFLGQLRHPNLVKLIGYCCEDEHRLLVYEYMAKGSLENHLFKKFPSMLSWSTRLNIAVGAAKGLVFLHDAEKPVIYRDFKTSNILLDPEYKAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYILTGHLTAKSDVYSFGVVLLEILSGRRAVDKTRPSREQHLVEHMRSWLKDPQKLSRVMDPALEGQYSATAAHKAALVAYRCLSGNPKNRPDMCQVVKDLEPLLNVTDDVSDESVAPIAPVKEDNAVRKERTARRRPGERDGGKLRQSKMRSPQKVVRRRPGQSEEFWVWHMPGEVKS |
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| Function | Serine/threonine-protein kinase RIPK [UniProtKB/Swiss-Prot:Q9ZUF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0021040 | OsLiXu_03g0021040.01 | Chr03 | 17839138 | 17844118 | - | NAM | ||
| CDS seq | atgtatatatacccctctctctctcccaatactgactccacctcaccactcgatcgatcgcaagaacacgataaggattcagggatcgatcgattcatctctcctcgtcgttggtcacaggacggagagagatcaccatcagcagctagcagcaggatgacgaggaagaaggagaggtcagggtgggggagcctgttcaggggatgcctgagcggaggaggcgcggcggggagccggaaggtgcggccggggccgaggacggcggcggcggcggcggcgaagcacggcggaggagcatcatcggcggcggcgcagcggctgtcgttcacggacgtgatgagcacggcgtcggagcaggagctgtcggtgtcgctggtggggtcgaacctgcacgtgttcacggtgggggagctgaaggcggcgacgcaggggttcctcgacggcaacttcctcggcgagggcggcttcggccccgtctacaagggcaacgtcgccgacaaggccaagccgggcctcaaggcccagcccatcgccgtcaagctctgggaccccgagggcgcccagggtcacaaagaatggctgtcggaggtgatcttccttgggcagctcaggcaccccaacctggtgaagctcatcggctactgctgcgaggacgagcaccgcctgctcgtctacgagtacatggccaagggcagcctcgagaaccacctcttcaagaagtttccttcgatgctgtcgtggtcaacccggttgaacatcgcggttggcgccgccaagggcctcgtcttccttcacgacgccgagaagcccgtcatctaccgcgacttcaagacctccaacatcctactcgacccggagtacaaggcgaagctgtcggactttgggctggccaaagatgggccggagggcgacgacacccacgtctccacacgcgtcatgggcacccacggctacgccgcaccggagtacatcctcaccggtcaccttacagcaaagagcgacgtatacagctttggtgtcgttctgctagagatcctatccgggcgacgggccgtggacaagacacgacctagcagggagcagcatctagtcgaacacatgcgctcctggctcaaggatccacagaagttaagccgagtcatggacccggccctggagggccagtactccgctaccgcggctcataaggcggccctggtggcgtatcggtgcctgagcggtaaccccaaaaatagaccggacatgtgtcaagtcgtgaaagacctagagcccctcctcaatgtcaccgatgatgtctctgatgagtcggtggcacccatagccccggtaaaggaggataatgctgtgagaaaggaaagaacagcaaggagaaggcccggtgagagggatggtggaaaacttaggcaaagtaaaatgcgttcaccccagaaggtcgttaggagacgtccaggccaaagcgaggagttttgggtgtggcatatgcctggagaagtaaaatcctaa
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| Protein seq | MYIYPSLSPNTDSTSPLDRSQEHDKDSGIDRFISPRRWSQDGERSPSAASSRMTRKKERSGWGSLFRGCLSGGGAAGSRKVRPGPRTAAAAAAKHGGGASSAAAQRLSFTDVMSTASEQELSVSLVGSNLHVFTVGELKAATQGFLDGNFLGEGGFGPVYKGNVADKAKPGLKAQPIAVKLWDPEGAQGHKEWLSEVIFLGQLRHPNLVKLIGYCCEDEHRLLVYEYMAKGSLENHLFKKFPSMLSWSTRLNIAVGAAKGLVFLHDAEKPVIYRDFKTSNILLDPEYKAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYILTGHLTAKSDVYSFGVVLLEILSGRRAVDKTRPSREQHLVEHMRSWLKDPQKLSRVMDPALEGQYSATAAHKAALVAYRCLSGNPKNRPDMCQVVKDLEPLLNVTDDVSDESVAPIAPVKEDNAVRKERTARRRPGERDGGKLRQSKMRSPQKVVRRRPGQSEEFWVWHMPGEVKS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.647103 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0407900 | RBH | 0.131331 | 0.134683 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g29410 | RBH | 0.087867 | 0.089621 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0407900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0021370 | RBH | 0.101918 | 12.502356 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0021190 | RBH | 0.103379 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0021250 | RBH | 0.0 | 3.588186 | 0.888007 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0021250 | RBH | 0.0 | 0.115606 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021080 | RBH | 0.000000 | 8.100677 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0276700 | RBH | 0.669144 | 43.379124 | 0.017972 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020820 | RBH | 0.000000 | 0.343832 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0279500 | RBH | 0.534383 | 154.0470275 | 0.1193515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0021070 | RBH | 0.0 | 0.195438 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0021110 | RBH | 0.0 | 28.967556 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0021180 | RBH | 0.0 | 2.827883 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023030 | RBH | 1.282651 | 1.653571 | 1.879506 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020920 | RBH | 0.063647 | 2.242591 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020880 | RBH | 0.0 | 6.930495 | 0.191393 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020760 | RBH | 0.256061 | 45.044781 | 0.0 |
