Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsN22_03G020880		OGI:03044990 \| 16/16			N22 \| OsN22RS2 \| Gramene(+IsoSeq)			Chr03:17655652-17660609		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK110, OsRLCK110, PTK5, OsPTK5
DNA seq		CGGAGCAGTAAAAACTGAGTACAAAGAGGCCAAGACCAATAAATTTCAAACCAAGAGAAAAGAAACAAGGAATTACAGGGGGTGCAATCCTTCCTGGCCAGTGACCACCGGCTGCACCACCATCTACATTTTACATCCTCATCATCAGTCACTACACAAAAACATTACATTGCGGGTTACGGATATATATATATTACACTTGATATTTAGGATTTTACTTCTCCAGGCATATGCCACACCCAAAACTCCTCGCTTTGGCCTGGACGTCTCCTAACGACCTTCTGGGGTGAACGCATTTTACTTTGCCTAAGTTTTCCACCATCCCTCTCACCGGGCCTTCTCCTTGCTGTTCTTTCCTTTCTCACAGCATTATCCTCCTTTACCGGGGCTATGGGTGCCACCGACTCATCAGAGACATCATCGGTGACATTGAGGAGGGGCTCTAGGTCTTTCACGACTTGACACATGTCCGGTCTATTTTTGGGGTTACCGCTCAGGCACCGATACGCCACCAGGGCTGCCTTATGAGCCGCGGTAGCGGAGTACTGGCCCTCCAGGGCCGGGTCCATGACTCGGCTTAACTTTTGTGGATCCTTGAGCCAGGAGCGCATGTGTTCGACTAGATGCTGCTCCCTGCTAGGTCGTGTCTTGTCCACGGCCCGTCGCCCGGATAGGATCTCTAGCAGAACGACACCAAAGCTGTATACGTCGCTCTTTGCTGTAAGGTGACCTGGCAAATGATAACACGATGCATTTGGTTAGAACATTTGTAAAAAGGATACTAGTACATTATAGGTTTGCAAGAGGAGAAAAAGAATCGATGGTGTTGAAAAGATATGTATACATAGTATAGGTGTGTGTATAGTGCATATACGTACCGGTGAGGATGTACTCCGGTGCGGCGTAGCCGTGGGTGCCCATGACGCGTGTGGAGACGTGGGTGTCGTCGCCCTCCGGCCCATCTTTGGCCAGCCCAAAGTCCGACAGCTTCGCCTTGTACTCCTGCACGACGCCACTTCAATTAGCCTTTTTCGATCTACTAGGCCGAATTAATCACTACTGGGCCTCCTACTCGGCCCACGTTAGACGATCTCCAAATATCAGTTGGGCTTTAGCCCAGTCATGAACTACTGCGTGCATTCGCGCGTTCAGACTCGCGAGGACAATCAGTCGCTGTATCACCTACTTTGTACTGTACTACTAGTAACCTGAGCACTTAATTTCCAACCTCTGACTAATGCACCATAAATTCGATTCGTGTGAACGAGTAAAGCATCAGGTCAACTCCATAAATAAATCACGTTATGCTACGAAAAGTAATTAGGTTGATCAATATCTCTAGAAGAATTTAAGTGTAATGAAATAATAATAATAATTAATAACAAGTGTAATTACCGGGTCGAGTAGGATGTTGGAGGTCTTGAAGTCGCGGTAGATGACGGGCTTCTCGGCGTCGTGAAGGAAGACGAGGCCCTTGGCGGCGCCAACCGCGATGTTCAACCGGGTTGACCACGACAGCATCGAAGGAAACTCTGAAAATAAAAAGAAAAAGAAAAGTAAATATAATTATTACATAATTCAATAATAATCCTGGTCAAGAGTAATTAATTCGTTAAATATAAGCATCACTAGAAGTATTTGCTTACTTCACTTTACATTACTTTGCGTGTGTGAGGCACAGCTAAATGCATGGCTAGTTGCATATGACCAAACCCAAAAAAAAAGAGAGAAAATAGCAGCTGCTGAATCGTATACCAGTTAGGTGGTGGACCAGTCAAGGTTTTGTGCACAAGTTGCATGCTTTGATTTGTTAATTTGGTCCGGCCAAACAAACCTTTTCTTAATTAATGGTTTTTCTGGATGATTCATACTAAATCAGTAGATCGAGTTTGGATGGAAAATTCATCAGGCACTGCGAATGTAAAAGCCTACTTTTTCAACAACTACTACCAATTATTAGGTCTTATTCCAACTAGCTTAATTAGCTGCTTTGCACTTAATTAGCTTTCTCTCGATCGATCGTCATCAAATCCGCCCAGCGTCCACAGGAATTAGACCTAAAAACATGTACTTCGTGCATATAAATACATATATTCCCTTTCTGGAATTGAGTAGCTAACGAACGAATTAACCTGAGAATATATGGCATGATCAATGTGAAACGGAGCCAATGGAGTCAATATGCTCATCTAAGATGAGACTGTCCACAACCACCTCATCTAGCTAGTTTCCTTTAATTCTTCTTCCACATCTAGCTAGACTTTTCGTTTTGAATTTTATTCCAACTAAATGCTTAATCAGTCAGAGTAGAAAATTACTTTCTTGGAGGGAGATATAACGGCATATATCTAGTCAGATTAAGATCAGATCAGGAAGGAGGAGAGGGTCAGCAATGTCAAAAACAAGCAGCGATTGATGCGGCCGCAATGTGTATAGCATAATCGATCAAATCAAACGTAGTCGACTAATCAATTATCAACTAGCTACAGCTGCTGACCACTGGCCAGTATGTATACCATCTATCCAGCTTACTAGCTGTCAGTGAAGATGATATATTGCGCGTGCTCCATGCTGGAGTGGCATGTACGTATGGCATATATAGCTAATTATCTGCTCCACTAGTGCGGTCATTAGGGACCTAATTTCTCCATATGAACAGGACTTACACAGTACTATACATAAATTGCGGCGTGTGTGTGAAACTTTGGAGCTTAATAAGATGTGTAAGCGACAAAGAATAATATATACATTAACCTAATTATTGAGTAGTGCTCCCTCTAATCTACTTGTACCACTGGTAGAGAAACCATCTTTGATCGATCCACCAGATTTCACAATAGCCCCGGTTATATTAAAAACCTCTTTAGTCCCGATTTGAAAGCTCTAAGGAATTTTTTGATCTTTAGTCTCGGTTGGTGTTACCAACTGGGACTAAAGATCTATTTATAGTCCCGGTTGGTGTTACCAACCGGGAAAAAAGATCAATATAAACTTTACTCTCGGTTGTGTTTAGTCCCGGTTGGTAACACCAACCGGGAAAAAAGTCGACATAAGCGGGGTGGTTGCACGCGGATCGGATCAATACATTCTCCTCCTCTCCTTTTTTAACTCATCTCCTCACAGAGTCACCCTTATCTTTTTCTCTCCCTCCTCCCTTCCTCTCCTCCTCTCCCTCCTCCTCACCTCCCTCCGCAACGGCAGGGCGCAGAGGCCCGGCCGGCCCGTGCGGCGGCGCGGCGCGCGGAGGGCCGGCCGGCCGACGTGCGGCGGCGCTACGCGCGGAGGGCCGGGCGAGGCGGCGCGCTAGCGGCTGGCGGCCTCGCGGCGGCGGCCTGGGACGCGGCGGGCGGCGCGCGGGCGGCTGGCGGCGGAGCCGGGGACGCGGCGGGTGGCGCGGCGGCGGGCGGCGAGGCGGCGCGGCAGCGGGCCGTTCATCTTCTTCCTTTTTTTCTTTCTTTTTTTTTAAAATCTGTGATTCGGATCTAAGACGATTTGTGTGTGATGTGAATATGTAATGTATTTGTGATGTAATTTTTTTAAGATTTTGTTATGTATTTAGAGATTGATTTGAGAATTTGGAGACTATTCGGGGATGATTGATTTGGGATTTTGGGATGGGATAGAGTGAATCAATATATTAAAAATAATGAAGAAAAGAATAGAATAAAGTAGCAACCTGAGCTAGCCTCTTTAGTACCGGTTGATGTTACCAACCGAGACTAAAGATACTCTATCTTTAGTCCCGATTGGTAATACCAACCGGGACTAAAAATAGATTTTTACTCCTGGTTTTTCACCCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTTATAGTCCCGGTTGGAAAACCGGGACTACAGGGGTTATGAACAGGGAGTAAAGCCCCTTTCTCCACCAGTGTACCATAACTAATTAGCAGAAGTTATATAATTAATTAAGAAATGGAGGGTGAATAATTGTACATACTCTTGAAGAGGTGGTTCTCGAGGCTGCCCTTGGCCATGTACTCGTAGACGAGCAGGCGGTGCTCGTCCTCGCAGCAGTAGCCGATGAGCTTCACCAGGTTGGGGTGCCTGAGCTGCCCAAGGAAGATCACCTCCGACTGCATGCATCACAAAAATGTTACTAATTATTTGCATGGCTAATAAAGTTGTTACTCCTAATTGATTGATTAATTAGAAGCAATTAAGTATAGTAAGTAAATTAAATTACCAGCCATTCTTTGTGACCCTGGGCGCCCTCGGGGTCCCAGAGCTTGACGGCGATGGGCTGGGCCTTGAGGCCCGGCTTGGCCTTGTCGGCGACGTTGCCCTTGTAGACGGGGCCGAAGCCGCCCTCGCCGAGGAAGTTGCCGTCGAGGAACCCCTGCGTCGCCGCCTTCAGCTCCCCCACCGTGAACACGTGCAGGTTCGACCCCACCAGCGACACCGACAGCTCCTGCTCCGACGCCGTGCTCATCACGTCCGTGAACGACAGCCGCTGCGCCGCCGCCGATGATGCTCCTCCGCCGTGCTTCGCCGCCGCCGCCGCCGCCGTCCTCGGCCCCGGCCGCACCTTCCGGCTCCCCGCCGCGCCTCCTCCGCTCAGGCATCCCCTGAACAGGCTCCCCCACCCTGACCTCTCCTTCTTCCTCGTCATCCTGCTGCTAGCTGCTGATGGTGATCTCTCTCCGTCCTGTGACCAACGACGAGGAGAGATGAATCGATCGATCCCTGAATCCTTATCGTGTTCTTGCGATCGATCGAGTGGTGAGGTGGAGTCAGTGTTGGGAGAGAGAGAGGGGTATATATACATGTGGGGGAAGCGAGGGGGCGCGTGTGTGGAGAGATGACCGCGTGTGCCTCGGCTTACCTACCAATCGATAGTAAGGACATGGACATCTTCTTCTTCTTCCTCCTCCTCCTACTACTACTCGACTCTTCCGTCCGTGACGTCTCCTCTCTTCTCGCCCGCGT More
CDS seq		ATGTATATATACCCCTCTCTCTCTCCCAACACTGACTCCACCTCACCACTCGATCGATCGCAAGAACACGATAAGGATTCAGGGATCGATCGATTCATCTCTCCTCGTCGTTGGTCACAGGACGGAGAGAGATCACCATCAGCAGCTAGCAGCAGGATGACGAGGAAGAAGGAGAGGTCAGGGTGGGGGAGCCTGTTCAGGGGATGCCTGAGCGGAGGAGGCGCGGCGGGGAGCCGGAAGGTGCGGCCGGGGCCGAGGACGGCGGCGGCGGCGGCGGCGAAGCACGGCGGAGGAGCATCATCGGCGGCGGCGCAGCGGCTGTCGTTCACGGACGTGATGAGCACGGCGTCGGAGCAGGAGCTGTCGGTGTCGCTGGTGGGGTCGAACCTGCACGTGTTCACGGTGGGGGAGCTGAAGGCGGCGACGCAGGGGTTCCTCGACGGCAACTTCCTCGGCGAGGGCGGCTTCGGCCCCGTCTACAAGGGCAACGTCGCCGACAAGGCCAAGCCGGGCCTCAAGGCCCAGCCCATCGCCGTCAAGCTCTGGGACCCCGAGGGCGCCCAGGGTCACAAAGAATGGCTGTCGGAGGTGATCTTCCTTGGGCAGCTCAGGCACCCCAACCTGGTGAAGCTCATCGGCTACTGCTGCGAGGACGAGCACCGCCTGCTCGTCTACGAGTACATGGCCAAGGGCAGCCTCGAGAACCACCTCTTCAAGAAGTTTCCTTCGATGCTGTCGTGGTCAACCCGGTTGAACATCGCGGTTGGCGCCGCCAAGGGCCTCGTCTTCCTTCACGACGCCGAGAAGCCCGTCATCTACCGCGACTTCAAGACCTCCAACATCCTACTCGACCCGGAGTACAAGGCGAAGCTGTCGGACTTTGGGCTGGCCAAAGATGGGCCGGAGGGCGACGACACCCACGTCTCCACACGCGTCATGGGCACCCACGGCTACGCCGCACCGGAGTACATCCTCACCGGTCACCTTACAGCAAAGAGCGACGTATACAGCTTTGGTGTCGTTCTGCTAGAGATCCTATCCGGGCGACGGGCCGTGGACAAGACACGACCTAGCAGGGAGCAGCATCTAGTCGAACACATGCGCTCCTGGCTCAAGGATCCACAAAAGTTAAGCCGAGTCATGGACCCGGCCCTGGAGGGCCAGTACTCCGCTACCGCGGCTCATAAGGCAGCCCTGGTGGCGTATCGGTGCCTGAGCGGTAACCCCAAAAATAGACCGGACATGTGTCAAGTCGTGAAAGACCTAGAGCCCCTCCTCAATGTCACCGATGATGTCTCTGATGAGTCGGTGGCACCCATAGCCCCGGTAAAGGAGGATAATGCTGTGAGAAAGGAAAGAACAGCAAGGAGAAGGCCCGGTGAGAGGGATGGTGGAAAACTTAGGCAAAGTAAAATGCGTTCACCCCAGAAGGTCGTTAGGAGACGTCCAGGCCAAAGCGAGGAGTTTTGGGTGTGGCATATGCCTGGAGAAGTAAAATCCTAA More
Protein seq		MYIYPSLSPNTDSTSPLDRSQEHDKDSGIDRFISPRRWSQDGERSPSAASSRMTRKKERSGWGSLFRGCLSGGGAAGSRKVRPGPRTAAAAAAKHGGGASSAAAQRLSFTDVMSTASEQELSVSLVGSNLHVFTVGELKAATQGFLDGNFLGEGGFGPVYKGNVADKAKPGLKAQPIAVKLWDPEGAQGHKEWLSEVIFLGQLRHPNLVKLIGYCCEDEHRLLVYEYMAKGSLENHLFKKFPSMLSWSTRLNIAVGAAKGLVFLHDAEKPVIYRDFKTSNILLDPEYKAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYILTGHLTAKSDVYSFGVVLLEILSGRRAVDKTRPSREQHLVEHMRSWLKDPQKLSRVMDPALEGQYSATAAHKAALVAYRCLSGNPKNRPDMCQVVKDLEPLLNVTDDVSDESVAPIAPVKEDNAVRKERTARRRPGERDGGKLRQSKMRSPQKVVRRRPGQSEEFWVWHMPGEVKS
Function		Serine/threonine-protein kinase RIPK [UniProtKB/Swiss-Prot:Q9ZUF4]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsN22_03G020880	OsN22_03G020880_01	Chr03	17655668	17660609	-	NAM
CDS seq	ATGTATATATACCCCTCTCTCTCTCCCAACACTGACTCCACCTCACCACTCGATCGATCGCAAGAACACGATAAGGATTCAGGGATCGATCGATTCATCTCTCCTCGTCGTTGGTCACAGGACGGAGAGAGATCACCATCAGCAGCTAGCAGCAGGATGACGAGGAAGAAGGAGAGGTCAGGGTGGGGGAGCCTGTTCAGGGGATGCCTGAGCGGAGGAGGCGCGGCGGGGAGCCGGAAGGTGCGGCCGGGGCCGAGGACGGCGGCGGCGGCGGCGGCGAAGCACGGCGGAGGAGCATCATCGGCGGCGGCGCAGCGGCTGTCGTTCACGGACGTGATGAGCACGGCGTCGGAGCAGGAGCTGTCGGTGTCGCTGGTGGGGTCGAACCTGCACGTGTTCACGGTGGGGGAGCTGAAGGCGGCGACGCAGGGGTTCCTCGACGGCAACTTCCTCGGCGAGGGCGGCTTCGGCCCCGTCTACAAGGGCAACGTCGCCGACAAGGCCAAGCCGGGCCTCAAGGCCCAGCCCATCGCCGTCAAGCTCTGGGACCCCGAGGGCGCCCAGGGTCACAAAGAATGGCTGTCGGAGGTGATCTTCCTTGGGCAGCTCAGGCACCCCAACCTGGTGAAGCTCATCGGCTACTGCTGCGAGGACGAGCACCGCCTGCTCGTCTACGAGTACATGGCCAAGGGCAGCCTCGAGAACCACCTCTTCAAGAAGTTTCCTTCGATGCTGTCGTGGTCAACCCGGTTGAACATCGCGGTTGGCGCCGCCAAGGGCCTCGTCTTCCTTCACGACGCCGAGAAGCCCGTCATCTACCGCGACTTCAAGACCTCCAACATCCTACTCGACCCGGAGTACAAGGCGAAGCTGTCGGACTTTGGGCTGGCCAAAGATGGGCCGGAGGGCGACGACACCCACGTCTCCACACGCGTCATGGGCACCCACGGCTACGCCGCACCGGAGTACATCCTCACCGGTCACCTTACAGCAAAGAGCGACGTATACAGCTTTGGTGTCGTTCTGCTAGAGATCCTATCCGGGCGACGGGCCGTGGACAAGACACGACCTAGCAGGGAGCAGCATCTAGTCGAACACATGCGCTCCTGGCTCAAGGATCCACAAAAGTTAAGCCGAGTCATGGACCCGGCCCTGGAGGGCCAGTACTCCGCTACCGCGGCTCATAAGGCAGCCCTGGTGGCGTATCGGTGCCTGAGCGGTAACCCCAAAAATAGACCGGACATGTGTCAAGTCGTGAAAGACCTAGAGCCCCTCCTCAATGTCACCGATGATGTCTCTGATGAGTCGGTGGCACCCATAGCCCCGGTAAAGGAGGATAATGCTGTGAGAAAGGAAAGAACAGCAAGGAGAAGGCCCGGTGAGAGGGATGGTGGAAAACTTAGGCAAAGTAAAATGCGTTCACCCCAGAAGGTCGTTAGGAGACGTCCAGGCCAAAGCGAGGAGTTTTGGGTGTGGCATATGCCTGGAGAAGTAAAATCCTAA More
Protein seq	MYIYPSLSPNTDSTSPLDRSQEHDKDSGIDRFISPRRWSQDGERSPSAASSRMTRKKERSGWGSLFRGCLSGGGAAGSRKVRPGPRTAAAAAAKHGGGASSAAAQRLSFTDVMSTASEQELSVSLVGSNLHVFTVGELKAATQGFLDGNFLGEGGFGPVYKGNVADKAKPGLKAQPIAVKLWDPEGAQGHKEWLSEVIFLGQLRHPNLVKLIGYCCEDEHRLLVYEYMAKGSLENHLFKKFPSMLSWSTRLNIAVGAAKGLVFLHDAEKPVIYRDFKTSNILLDPEYKAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYILTGHLTAKSDVYSFGVVLLEILSGRRAVDKTRPSREQHLVEHMRSWLKDPQKLSRVMDPALEGQYSATAAHKAALVAYRCLSGNPKNRPDMCQVVKDLEPLLNVTDDVSDESVAPIAPVKEDNAVRKERTARRRPGERDGGKLRQSKMRSPQKVVRRRPGQSEEFWVWHMPGEVKS More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsN22_03G020880	OsN22_03G020880_02	Chr03	17655652	17655818	-	IsoSeq
CDS seq	ATGGTGGTGCAGCCGGTGGTCACTGGCCAGGAAGGATTGCACCCC
Protein seq	MVVQPVVTGQEGLHP

No AS event found.

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	6.930495	0.191393

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_03g0407900	RBH	0.131331	0.134683	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os03g29410	RBH	0.087867	0.089621	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os03g0407900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_03g0021370	RBH	0.101918	12.502356	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_03g0021190	RBH	0.103379	0.0	0.000000
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_03g0021250	RBH	0.0	3.588186	0.888007
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_03g0021250	RBH	0.0	0.115606	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_03g0021080	RBH	0.000000	8.100677	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_03G0276700	RBH	0.669144	43.379124	0.017972
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_03g0020820	RBH	0.000000	0.343832	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_03G0279500	RBH	0.534383	154.0470275	0.1193515
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_03g0021070	RBH	0.0	0.195438	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_03g0021110	RBH	0.0	28.967556	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_03g0021180	RBH	0.0	2.827883	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_03g0021040	RBH	0.0	0.647103	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_03g0020920	RBH	0.063647	2.242591	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G022760	RBH	0.753096	0.477673	0.477058
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_03g0020760	RBH	0.256061	45.044781	0.0

Custom TreePlot

Powered by

© 2021-2025 Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.