Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0023030 | OGI:07070110 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:25123475-25128407 | ||||||||
| Gene Symbol | PTK10, OsPTK10 | ||||||||||
| DNA seq | cttgccacgcacaccaccaaatcgccaaccaaaaagcaaacccccgcgtcttctccgatcagctccgctcgctcgccgccgacgagctcgccccgccgccgacggcgacggcgcatgctagctgcgtatagcccgcggcggagatgaggtcatccagcgattgcaaggttgtggcggcggcggcgaggaagaaggagaaggaggcggcggcgtggccgtggtcgctgtgggggttcctcctgaccggctgcctcggcggcggcggcggcggagggaagaagaagagcggggggaagaaggtgcgtccccgcggcggcggcggcggcctgcggcggctgtcgttcacggacctgacgggggcggcggaccaggacctgtcggtgtcgctggtggggtccaacctccacgtcttcaccgtcgccgagctccgcgacgccacccgcgggttcgtctccggcaacttcctcggcgagggcggcttcgggccggtctacaagggcctcgtcggcgacggcgtcaagccgggcctccgcccgcaggccatcgccgtcaagctctgggatcccgagggcgcccagggccacaaggaatggctggtacttcacccctccacgtgtcccttttccacttaatcatcaaaaaaaaagtgatatgatttcatttgattaattagacatgcacgcgttaatcactttagttagttaatcatttaatgcgataattaaatcagattgatcgattatgtttgtataagattaacaattaagcttggagtaattaatctgagatagtgtagtgccagcttccttggaagagtccctaaatctaatgcttgggggaaacaacattttctcacatggtttcttatagtaaaagagtggccatcaaatatagcttaattggtagagtagtagttgccttgcaaggatcactcaaatatatgtatcccagtatatgaatatcctagggcattgagtaaccctctagataactgaaatttgcaagtgaggaacagtatttttttttctttttgagggtgagagatatgagatatcgttgattttgttttttaaattaatattattgtttttctttgggaaagtgtcgattttccttttatttattgcatagaagcaaagttgtgtcgtttctcctgtagcaacagggaatgttcagtcaaattacccaatcgtttctttcctaatgctatttagtttcccatcaaacagagactgatcagcggtaattagtttggttatcggtcgactagaggttaccacctaaaagactctattattcaaattttatatttgaaaattttgaacttttacgacttatgactagttaactaccaattattcattaaaaaaattgaatctgaaattttatctggtaaaattcagtaactgtcaggggccagtagcttcggaaacccggtttctgaaacgcttggcctaaacaattaattacagattgtttaatttcagatcaactaatactactactactcacacgatcatctagaacataatcaaacaggtttaaaaatatcttaagcagcacgattaggacgtgcgaggcaaagaacaaaggaggggtagttggacgatgtgacggttccggcgacggtcggataagtttccagtgatctaatcatgctgcccaatgcaacagtgccactgaaatggacgtgatcatgctgctgattcgctgctactactactactacctgatttctgatgattctgacgtcgttgcttgcaggcagaggtgatcttccttggccagcttcggcatcccaacctggtgaagctggtcggctactgctgcgaggacgagaaccgcctcctcgtctacgagtacatggagcatggcagcctcgagaaccacctcttcaaacgtaagcactgaactgatccttcgctaattgattttcagcttaagtttgtactactgttccattgatctatagcactagttgccaacttgccattgtgctaattttttatctgacgagatgtctctttaccatgtcatgggtgtgtgtcaaattgaagctttagttcgagtaggactacctaattaactgatggttaatgagtggtttggtacggtcgtgaagtggagatttaaaacagaagttggcttgaccattctcacacaaacgcaatgacctggcacggcatggtgccatggtctgatggtcattgagaaaatgaggttatattccaacttaataatggattatagatatcacaaaatgagagagaagcaaagccattattcagaagtctacttcaaatgggtagctttgctactcaaaaaacttggttgcgtcttttgaggctttcagcttggatgatggatatgttttccttcgtttggctagccaacttctttagcttattagagttcagagttctgaccaaactgaatttgactggccttctctgctcacttatgagcttgcaaaacccatggaaaatagtatttcattaggtaagggtcaattatacattcactcacccttgcgagacaagctatagattatgctactagacgttttctaatgctagattacagacgtcagatgaaagtgaggtcacctgtagttgttggatcaatttcaggttgacatagtaatctagtgtgctgcaatcttcccagctgcctcactggctcaagctgattgatttgttcttggtcatgacgaaatctcctaactcgttgactggatatcgaatccctccaaattacaataataacatttcttgaaaattcagaaggcagaaagaacaagaaaccaaaattccacaaaggcgacaacacgcatggccggctagccagtactgttcatcgtcttttttttctcctctgctgcaacaatacgcataaactgctttgtttttccttttccagctttcttattcgattgatgtgtatacataacatggctatcagctatcgattaattaattataatgatgacatgcgcggctttagctgacgttgatcctgctgagatttctgaagatattttcttttcttttcttctttttctgcagagattcctgccgtgctgccgtggtcgacccgattaaacatcgcggttggcgccgcgaagggtttggcgttcctccacgacgcagagaagccggtcatctaccgtgacttcaaggcctccaacatcctgctcgattcggtgagtgccctgtagcttttcctaggtagattgacacctctcatatgcatgcatctcagttagctaggagtttttgatgcacacatcacatatgatatactatatatatagtatcatcctaatgaccttttcatcatcatcagtgaaaaggtagagtaatgactaggaaattgtacttggcacagtttggattttgaagcattttatgacatgattatgtcagagaaacttagtatcatactgtacttatgctgttatagtgttatgcatcacttcatacttaactagtactagttaatggttattatcatattgtacttctctaccaaagaaaaggaaaggaaagcttagtgatgtgggctatggttcataggttgggccgtaagtgagttctgctcaagattgggctaaaaggaggcccaaattttagtttcaccactgaaaagcgtcactgaaaataattttatcgggtcatataatcaaatctttattatctaaaaaatataatcaaatctttacatttttttccatgaccgtgtcaatgttcttttttttgaaagaaaaagcaaatgttaagtttgggcctttaatgggttactactcaagatgggccaaaatcaggcccaacttgaatttcccccactttaaagcccattcaatagtaataagcccaagtaagagaatcgcatcaaatgggctaatggtttttgggcctgtgaattttgtccctccctccaggattacaaggcgaagctgtcggacttcgggctggccaaggacgggccggagggggacgacacccacgtgtcgacgcgcgtgatgggcacccatggctacgccgcgccggagtacatcatgaccggccacctgacggcgaagagcgacgtgtacagcttcggcgtggtgctcctggagatcctgacggggcggcgcgccgtcgacaagacgcggccgaacagggagcagagcctcgtggagtacgcgcggccgtgcctgcgcgacccgctccggctcatccggatcatggacccggcgctggaggggcgctactcgccggcggcggcgagggaggcggccgccgtcgcctaccggtgcctcagcgggagccccaagaaccgccccgacatgtccgccgtcgtcgacgcgctcgagccgctgctcgtcgccaccgacgacgtccccctcggccccgtcgtgctgttcgtcgcgccggatcaggaggccgacgccgccgccgccgccgacgacgacgaggacgacaaggcccggcggcggcagcggcggacgcggaaggacgagcagcaccgccgccgcagccgcctccggacgtcgcccaagggcagcccgaggaagcccgccgtcgccgccgcttgccggaacgaggagttctgggtgtggcacgtccccgccgaccacaaggcgtgagcgagtgacacgtggcgcgttgcatcgcacgccatgtcagccgccgctttgctttgctccacgtgtgcgacgaacattgtgtgtgtgtgtgatgaggtctagtagtaacactggtgatttgattaggatttgcatgcatccctgtactctgtttgtttcagtgagatgcagagtgagagagcgatcaattcataattcacagcacaacgaagatcagatcagaaaatatcatatcaggtctcgtcttctttaatccaacccttgtttgatttgattggttgatcccttcgaaagtcaatttgcatt
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| CDS seq | atgaggtcatccagcgattgcaaggttgtggcggcggcggcgaggaagaaggagaaggaggcggcggcgtggccgtggtcgctgtgggggttcctcctgaccggctgcctcggcggcggcggcggcggagggaagaagaagagcggggggaagaaggtgcgtccccgcggcggcggcggcggcctgcggcggctgtcgttcacggacctgacgggggcggcggaccaggacctgtcggtgtcgctggtggggtccaacctccacgtcttcaccgtcgccgagctccgcgacgccacccgcgggttcgtctccggcaacttcctcggcgagggcggcttcgggccggtctacaagggcctcgtcggcgacggcgtcaagccgggcctccgcccgcaggccatcgccgtcaagctctgggatcccgagggcgcccagggccacaaggaatggctggcagaggtgatcttccttggccagcttcggcatcccaacctggtgaagctggtcggctactgctgcgaggacgagaaccgcctcctcgtctacgagtacatggagcatggcagcctcgagaaccacctcttcaaacagattcctgccgtgctgccgtggtcgacccgattaaacatcgcggttggcgccgcgaagggtttggcgttcctccacgacgcagagaagccggtcatctaccgtgacttcaaggcctccaacatcctgctcgattcggattacaaggcgaagctgtcggacttcgggctggccaaggacgggccggagggggacgacacccacgtgtcgacgcgcgtgatgggcacccatggctacgccgcgccggagtacatcatgaccggccacctgacggcgaagagcgacgtgtacagcttcggcgtggtgctcctggagatcctgacggggcggcgcgccgtcgacaagacgcggccgaacagggagcagagcctcgtggagtacgcgcggccgtgcctgcgcgacccgctccggctcatccggatcatggacccggcgctggaggggcgctactcgccggcggcggcgagggaggcggccgccgtcgcctaccggtgcctcagcgggagccccaagaaccgccccgacatgtccgccgtcgtcgacgcgctcgagccgctgctcgtcgccaccgacgacgtccccctcggccccgtcgtgctgttcgtcgcgccggatcaggaggccgacgccgccgccgccgccgacgacgacgaggacgacaaggcccggcggcggcagcggcggacgcggaaggacgagcagcaccgccgccgcagccgcctccggacgtcgcccaagggcagcccgaggaagcccgccgtcgccgccgcttgccggaacgaggagttctgggtgtggcacgtccccgccgaccacaaggcgtga
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| Protein seq | MRSSSDCKVVAAAARKKEKEAAAWPWSLWGFLLTGCLGGGGGGGKKKSGGKKVRPRGGGGGLRRLSFTDLTGAADQDLSVSLVGSNLHVFTVAELRDATRGFVSGNFLGEGGFGPVYKGLVGDGVKPGLRPQAIAVKLWDPEGAQGHKEWLAEVIFLGQLRHPNLVKLVGYCCEDENRLLVYEYMEHGSLENHLFKQIPAVLPWSTRLNIAVGAAKGLAFLHDAEKPVIYRDFKASNILLDSDYKAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYIMTGHLTAKSDVYSFGVVLLEILTGRRAVDKTRPNREQSLVEYARPCLRDPLRLIRIMDPALEGRYSPAAAREAAAVAYRCLSGSPKNRPDMSAVVDALEPLLVATDDVPLGPVVLFVAPDQEADAAAAADDDEDDKARRRQRRTRKDEQHRRRSRLRTSPKGSPRKPAVAAACRNEEFWVWHVPADHKA |
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| Function | Serine/threonine-protein kinase RIPK [UniProtKB/Swiss-Prot:Q9ZUF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0023030 | OsLiXu_07g0023030.01 | Chr07 | 25123475 | 25128407 | + | NAM | ||
| CDS seq | atgaggtcatccagcgattgcaaggttgtggcggcggcggcgaggaagaaggagaaggaggcggcggcgtggccgtggtcgctgtgggggttcctcctgaccggctgcctcggcggcggcggcggcggagggaagaagaagagcggggggaagaaggtgcgtccccgcggcggcggcggcggcctgcggcggctgtcgttcacggacctgacgggggcggcggaccaggacctgtcggtgtcgctggtggggtccaacctccacgtcttcaccgtcgccgagctccgcgacgccacccgcgggttcgtctccggcaacttcctcggcgagggcggcttcgggccggtctacaagggcctcgtcggcgacggcgtcaagccgggcctccgcccgcaggccatcgccgtcaagctctgggatcccgagggcgcccagggccacaaggaatggctggcagaggtgatcttccttggccagcttcggcatcccaacctggtgaagctggtcggctactgctgcgaggacgagaaccgcctcctcgtctacgagtacatggagcatggcagcctcgagaaccacctcttcaaacagattcctgccgtgctgccgtggtcgacccgattaaacatcgcggttggcgccgcgaagggtttggcgttcctccacgacgcagagaagccggtcatctaccgtgacttcaaggcctccaacatcctgctcgattcggattacaaggcgaagctgtcggacttcgggctggccaaggacgggccggagggggacgacacccacgtgtcgacgcgcgtgatgggcacccatggctacgccgcgccggagtacatcatgaccggccacctgacggcgaagagcgacgtgtacagcttcggcgtggtgctcctggagatcctgacggggcggcgcgccgtcgacaagacgcggccgaacagggagcagagcctcgtggagtacgcgcggccgtgcctgcgcgacccgctccggctcatccggatcatggacccggcgctggaggggcgctactcgccggcggcggcgagggaggcggccgccgtcgcctaccggtgcctcagcgggagccccaagaaccgccccgacatgtccgccgtcgtcgacgcgctcgagccgctgctcgtcgccaccgacgacgtccccctcggccccgtcgtgctgttcgtcgcgccggatcaggaggccgacgccgccgccgccgccgacgacgacgaggacgacaaggcccggcggcggcagcggcggacgcggaaggacgagcagcaccgccgccgcagccgcctccggacgtcgcccaagggcagcccgaggaagcccgccgtcgccgccgcttgccggaacgaggagttctgggtgtggcacgtccccgccgaccacaaggcgtga
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| Protein seq | MRSSSDCKVVAAAARKKEKEAAAWPWSLWGFLLTGCLGGGGGGGKKKSGGKKVRPRGGGGGLRRLSFTDLTGAADQDLSVSLVGSNLHVFTVAELRDATRGFVSGNFLGEGGFGPVYKGLVGDGVKPGLRPQAIAVKLWDPEGAQGHKEWLAEVIFLGQLRHPNLVKLVGYCCEDENRLLVYEYMEHGSLENHLFKQIPAVLPWSTRLNIAVGAAKGLAFLHDAEKPVIYRDFKASNILLDSDYKAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYIMTGHLTAKSDVYSFGVVLLEILTGRRAVDKTRPNREQSLVEYARPCLRDPLRLIRIMDPALEGRYSPAAAREAAAVAYRCLSGSPKNRPDMSAVVDALEPLLVATDDVPLGPVVLFVAPDQEADAAAAADDDEDDKARRRQRRTRKDEQHRRRSRLRTSPKGSPRKPAVAAACRNEEFWVWHVPADHKA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.282651 | 1.653571 | 1.879506 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0613500 | RBH | 2.528249 | 2.707903 | 3.555501 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g42200 | RBH | 1.655022 | 1.713926 | 0.900616 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0613500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023110 | RBH | 0.459124 | 16.871782 | 3.057928 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023160 | RBH | 0.548747 | 7.248116 | 1.894729 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023000 | RBH | 1.130897 | 16.885782 | 2.523235 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0022960 | RBH | 0.152542 | 0.031544 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023020 | RBH | 5.900212 | 5.563532 | 8.085376 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0413600 | RBH | 18.6246525 | 18.6457795 | 1.489562 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0023490 | RBH | 0.359872 | 0.855879 | 0.611050 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0424300 | RBH | 21.0257645 | 15.8145075 | 1.592215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0022800 | RBH | 0.507373 | 0.159792 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0022940 | RBH | 1.206104 | 12.141663 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0022840 | RBH | 6.338375 | 10.162111 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021040 | RBH | 0.0 | 0.647103 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0022800 | RBH | 0.521048 | 7.886138 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022760 | RBH | 0.753096 | 0.477673 | 0.477058 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0022790 | RBH | 1.376008 | 6.400749 | 9.295492 |
