Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0004890 | OGI:02010350 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:3461574-3468234 | ||||||||
| Gene Symbol | C3H13, OsC3H13, BIP105, DLN42, DLN42a, DLN42b, OsDLN42, OsDLN42a, OsDLN42b | ||||||||||
| DNA seq | caaaacgcgcactcgtgtgctttcgccttccattctccaaaccctcgcgggagatcggaattccccaccccggagcgccggatccaccaccgatcgtcggcggcggcggcggaggaggctgcgacggcggaggcggagatgctgggccctcctcgccgcgggccggcgtacaagacgaagctgtgcgcgctgtggcagcgcggcaactgcaaccgcgacacctgcagcttcgcccacggccacggcgacatccgccgcccgccgtcctcccgcggcgccttcacgcaccacccgggtatggattgcccccctcccccctcgcgcgcccccctgttcgttgtttgtcttcgagatcccccgcccctgggtttagggtttctggtgtctagtgcaggaggcggagggcgttggatgtcctagaaTtttttattttatcgtcgtgattgtcgataagcttagattagatgtatgcgttgctagatggctagatgtgaaatggaagtgcggaaaccggactattggattatgtcaagagtagtattttcacaaaagccgagtgataatgttataagagtgagcattggaagtttggaactaagcggctggttctggagaacgtgacatactgggcggtaagcccgaatgcgatgtttggcttcccatgcaaaaaaggaatgtcataaaaagtggaaattgctggaatgttgccttttaagaggacattcgatacccatgaaggagttaggacttaggagagaatccagtcattgctgtaaaccttctttatgattcgcgcgatagtttgctggcttttttgtcttgttctattgcgtttgtgatttttactgtatttcttatacgagtgcttgaattcaaccaccagttgctgcagatagaaaataattctaacaagtggaagcttgttgcagaattaggtggcattcttactggttgtcttttgatttaattatcattcaaactagcagactctgcagatatgttgactcaactgctgccagaggatagcatgacctttttcataaattcttcacttggtatttcgacgatttgtgttgacgataatgcttgtgctgtaccagaaggtgaacttgtgaggatcttggatgatgcctccattgaatgattgccaataatatattcaatgtgatacaatcatgccattagctggctttgcaattactgggtcacacattatatgattatggtgcatcagctagttccattggaagtattattctcactggtgattcaaacattttgtgattcttcacaagtcgccattgaagatatctgagcaaatgctagtatatgtatgggatattgggactatgccattatggaagacctttcttcatcatacttgctatatgaggttatttatggagcactcatccatttcacttcagacgatcaacgttattatattaatgggtgaatcagtggtttcttgtcgtatcttggtatatgcttgtgcattattttttggccctactttttttgtggctaatggcattatcctggagccccagctacttattgctaattgaataatcttgtagctcaatggtcttggtaagcttaacaggattatgggtgtcctactatctatatattacttcctttttgttttttgtttcataagttgcttcctttgtataaaacttgcacctccctgacttctagggagaagagattatagagccggtgatttcagaggcaggattgataggaggttttcacctcggaggaggcattcccctggaagagagtccaggggtcatcgtcccctttatgatagaaggccatcttctcgagaaagaggtaataactgctttctttctctgtcgtgtgtgtatttgcatgtgtgtatacaactgtttctggtcgcttctacatactgattgcttttaagtttatgctatttataaactcataaaaatgtgatttcttactgcagattctagctattcacgatctcctagcaggaagaggtacatatttcatttcatcatatgagcatgatcttttgaagttaaattctaaatatgctgtgagtgcatgttaaagccctgatcaaagttcaatttatggtgtctttgcttatctttatcatcgatttattagtatattgccttgtcgtgtttctattggtcttgcattttagtttttcatcattgttaatcaccatttgatatgcttgagttaagatccacacaagctacaattttagttctgtagttttatattaatggtgctgtaaactatcatcaacatatttgttccattataatgctaaaattatcttgctcagaatggtaaggttttgtattcttcctgcagattgtacctggtgatacttactatctatcactcaaattatttgttttgttttcatagtcataagcatgttttcctaaaggtcatgcaagcacttgtataagctgtattttgcgatcaaagtagaacttgatatttgaacactggcatttccgttggaattgtggttgggtttactagatttattctagatgccttgaacatgttgagtcgtgctgaactggtaatttacttttccacaatctatcctttatttccagtgagaggaggcatgaaaagaagactgacgatggagaaaccaactcatctaggagtttaagtctctctgataacaacgatgaaaagaaaaaggacaaattctcaagtggtgatgagaaagaagaccacgaaaagcaggtatgagaaaaatgtaatcaaattcatggcttatacaagcacatttggcacaatcttcattgcataattatgaatattgtgcagctgaaacaaatacggctggatatggaggctttgcgtgacgataaaactcagatggaggtcagtttctatttgtctcgctatatttgttacaatatggcacatgctaccatgttaacattttgactgccactttttattcactcataaaaaggagttggtggttgtgatgataggttccaccatcccatgccattttaaaagatcttttgtggatgaatctaccttagtgtgtgtgtgtgaattgtaggatcttttgtaaaggattacatcttctgcacatgtagacatgcataagatgatcgattgacgcaagtcatatattctattttaaatttgttactaatttgtcatatgtagacatgtatttttataaaaaagttcaaaactaatggcttatttatctgtggtatgctgcaatgaatgagcttatgagcactatgctagtaatgtgtaaattgagaaatggtaatgcatggatttcatcaagtgttcaaagcgtaggtgacttttcactagtccagtactgctgtgccaactatcaactaatagtgtttgcatgtagaacttagtatgtgggtattgtttatcatctttaatttcagacatattctccattctgttcatgtttggcacagagattgcacatcttccaatcatttaatagtagtcatgcttgacgaattggttggcagtgcgtctttccatgaataaccccaagagtaccctctagtcttgtgtccactttggaccttcattgacttattgtacttgagtttatttatttttgtcttcctgtcatgttatattttccgactgagctttggagcgggtcagcactcagcaggcacattattatatggtgcttgcgctcttgtttcaaatgctttctattttatggctgtgctaatatttcaaattttcaatggtgctgcaagaatttgatttcacattgtttttagcatctcgtgaacacagtacttgctaactactacattagaaaagactcctgcTtttttttttgtttcatggaatgatattacaaaacatcctacttggccatgtctctcttttagacttttagaaaaagtcaagctcttagaaatgttacataaataaatgtacactaatttataaatggttccttataatttgaaaaaagtttgcattaaagacaccatttaataatattcctacttcatcactgttatgagcatgggccaggccgatgcagcagtttaggcacgataaattaggaataagtcatataatggtaggagattatctagttaggaaagagatgaagtttattatctagttgggattgatttctatgatactatagactatccttggatgtcaagcctgtcctccctatatataaagggaccccatgtactctatcattaatcaatcaatgaatctctaaagttagccctaatcctcagagcctcttttagctgagcagggagaagccttgccgctgctattagtgagcgagtgccctatcactgggtcttcggacccttaccctagctactccataacagtcactacccattgcttgtacttagttccattcacgtctataatgttagatcatgctgaatctttgctccaaactcttaactctagtcaacgcacttacctatttgtaggtcattttggatgagaagatagatgaagtgcgcaagatctctagcaaagttaatgatcttgaggtgcagcttagaagggagaaagatgaatgccataggtacttaagcaatgtttccacatgacaatggcacattatcttgacagtattatccaatagttctatattgtttttctatacctttgtaggatgacctcaaagatgaagaagtttattaaagctcatgctcggtttttgaaggcacaagaagaagtgaaaaggtgctttatgttttcatcatgtttggccttgtaatgctagtacacaccagattactcctttttgcataactatcaatcaataagtgttcaccaattggagttatgcaggtcacaagctcgtttcgagaggcttggtgatttgcttgcttcagatattttgaagcgtggtgctaatgaagaggggtccagtgtcaatgaagacctaaacgaaaggagtcctaatactgcagcaactaaaaagagatcaatcccatactcaacaagtgaagaagcgaaagctggtatgtagcttagtttctcgggacactctgattgccaggttgtgatttgtacaatatggatcttggtgttatgcagcatccaactttccccttctgttaaactgatatatgtacctctttatggagtaaccagtcgatcctagtatgaagtagttcaaatgttcctttatttaatattaagcattaaaattgatgtgcttagttttcttacagtagcactgaaggatgcctagtttcttttataattggattttaattctttctgcaaattgctgaagaagtgtcttaattatgtacttaaacctaattgcttgtctcctcagtgaagaagagaagagagcgagactctgatacaatgactaggtcagataaatataggtcagatgttacagattttgataaaacaagtaaggggactgaggcaaccaagtctttatatttgaagaagaaattatgggaagatgaaaaaagtaagctaggagccaacattttcacagaaaaggtgcaccatttctcccgcccgctctcaattttatgatgaactacatatcatacttagtacactcagtccagtgctttgtttaaacattatcacatattgctagcctatgcatttgattgcactgtatatatctctactagtgtaaaagcagagttgtccttccttcccctcttcccacctaccgcgtacagcgagagagtgaaaaaccgaaaggccaaacttattacttgtctaaacaaaaagcctagttgatatttggaaagttcggtcattgccagaccttgtattgaaactgataggcttccttgatcatcaggtcctaaagcccttcttggctatgttggcatctgtatttatctttgtttgattgtgcttatcacaggcaaatattttgttaacttgcaggtcaaaggttctcccgtcagacatgttttgccctccactggcatggctgctcatgctattgatgatctcaacgaagctattgaactggaggacagacatgaatccatagacgcattactagaaaatgatgctgatgacaaaactagatcacctgctattcccctgcagccaccaccagtggtacagaatgcttatgagcaggtgattaaattttcacctttccaaaaaaaaatattggacctgcttacatgcacggtcagcggcatggaactggacagtgcattttgtttataaaaaatcgttgtactaaaaaagctccttttttttccctgtgcatttgctaatttgctgaaaaagcaaactcataatttgtttcatcttttcccagtatgagggtgatgacgaggaagtcgatgtggaataagtggatggcctcgtttctagacaagaggcctctgatgaagcaatggcgagattagcatcttccccagctccttataattagtactattagcatcttggtgtacaaagtgctatctatttgacattgggaattcagcttatatttatcaagaatccttttgtagtaacatccttggcgctgagacagccttagtcaactatgtggagcagccgtataaatactccatagagtgtctggtttggctaagctaatgacgtatggtatgtgcgctccttctgccctggggattgcgacgcc
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| CDS seq | atgctgggccctcctcgccgcgggccggcgtacaagacgaagctgtgcgcgctgtggcagcgcggcaactgcaaccgcgacacctgcagcttcgcccacggccacggcgacatccgccgcccgccgtcctcccgcggcgccttcacgcaccacccggggagaagagattatagagccggtgatttcagaggcaggattgataggaggttttcacctcggaggaggcattcccctggaagagagtccaggggtcatcgtcccctttatgatagaaggccatcttctcgagaaagagattctagctattcacgatctcctagcaggaagagtgagaggaggcatgaaaagaagactgacgatggagaaaccaactcatctaggagtttaagtctctctgataacaacgatgaaaagaaaaaggacaaattctcaagtggtgatgagaaagaagaccacgaaaagcagctgaaacaaatacggctggatatggaggctttgcgtgacgataaaactcagatggaggtcattttggatgagaagatagatgaagtgcgcaagatctctagcaaagttaatgatcttgaggtgcagcttagaagggagaaagatgaatgccataggatgacctcaaagatgaagaagtttattaaagctcatgctcggtttttgaaggcacaagaagaagtgaaaaggtcacaagctcgtttcgagaggcttggtgatttgcttgcttcagatattttgaagcgtggtgctaatgaagaggggtccagtgtcaatgaagacctaaacgaaaggagtcctaatactgcagcaactaaaaagagatcaatcccatactcaacaagtgaagaagcgaaagctgtgaagaagagaagagagcgagactctgatacaatgactaggtcagataaatataggtcagatgttacagattttgataaaacaagtaaggggactgaggcaaccaagtctttatatttgaagaagaaattatgggaagatgaaaaaagtaagctaggagccaacattttcacagaaaaggtcaaaggttctcccgtcagacatgttttgccctccactggcatggctgctcatgctattgatgatctcaacgaagctattgaactggaggacagacatgaatccatagacgcattactagaaaatgatgctgatgacaaaactagatcacctgctattcccctgcagccaccaccagtggtacagaatgcttatgagcagtatgagggtgatgacgaggaagtcgatgtggaataa
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| Protein seq | MLGPPRRGPAYKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRAGDFRGRIDRRFSPRRRHSPGRESRGHRPLYDRRPSSRERDSSYSRSPSRKSERRHEKKTDDGETNSSRSLSLSDNNDEKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEKIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLLASDILKRGANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAVKKRRERDSDTMTRSDKYRSDVTDFDKTSKGTEATKSLYLKKKLWEDEKSKLGANIFTEKVKGSPVRHVLPSTGMAAHAIDDLNEAIELEDRHESIDALLENDADDKTRSPAIPLQPPPVVQNAYEQYEGDDEEVDVE |
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| Function | Zinc finger CCCH domain-containing protein 13 [UniProtKB/Swiss-Prot:Q6H7U2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0004890 | OsLiXu_02g0004890.02 | Chr02 | 3461606 | 3468234 | + | NAM | ||
| CDS seq | atgctgggccctcctcgccgcgggccggcgtacaagacgaagctgtgcgcgctgtggcagcgcggcaactgcaaccgcgacacctgcagcttcgcccacggccacggcgacatccgccgcccgccgtcctcccgcggcgccttcacgcaccacccggggagaagagattatagagccggtgatttcagaggcaggattgataggaggttttcacctcggaggaggcattcccctggaagagagtccaggggtcatcgtcccctttatgatagaaggccatcttctcgagaaagagattctagctattcacgatctcctagcaggaagagtgagaggaggcatgaaaagaagactgacgatggagaaaccaactcatctaggagtttaagtctctctgataacaacgatgaaaagaaaaaggacaaattctcaagtggtgatgagaaagaagaccacgaaaagcagctgaaacaaatacggctggatatggaggctttgcgtgacgataaaactcagatggaggtcattttggatgagaagatagatgaagtgcgcaagatctctagcaaagttaatgatcttgaggtgcagcttagaagggagaaagatgaatgccataggatgacctcaaagatgaagaagtttattaaagctcatgctcggtttttgaaggcacaagaagaagtgaaaaggtcacaagctcgtttcgagaggcttggtgatttgcttgcttcagatattttgaagcgtggtgctaatgaagaggggtccagtgtcaatgaagacctaaacgaaaggagtcctaatactgcagcaactaaaaagagatcaatcccatactcaacaagtgaagaagcgaaagctgtgaagaagagaagagagcgagactctgatacaatgactaggtcagataaatataggtcagatgttacagattttgataaaacaagtaaggggactgaggcaaccaagtctttatatttgaagaagaaattatgggaagatgaaaaaagtaagctaggagccaacattttcacagaaaaggtcaaaggttctcccgtcagacatgttttgccctccactggcatggctgctcatgctattgatgatctcaacgaagctattgaactggaggacagacatgaatccatagacgcattactagaaaatgatgctgatgacaaaactagatcacctgctattcccctgcagccaccaccagtggtacagaatgcttatgagcagtatgagggtgatgacgaggaagtcgatgtggaataa
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| Protein seq | MLGPPRRGPAYKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRAGDFRGRIDRRFSPRRRHSPGRESRGHRPLYDRRPSSRERDSSYSRSPSRKSERRHEKKTDDGETNSSRSLSLSDNNDEKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEKIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLLASDILKRGANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAVKKRRERDSDTMTRSDKYRSDVTDFDKTSKGTEATKSLYLKKKLWEDEKSKLGANIFTEKVKGSPVRHVLPSTGMAAHAIDDLNEAIELEDRHESIDALLENDADDKTRSPAIPLQPPPVVQNAYEQYEGDDEEVDVE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0004890 | OsLiXu_02g0004890.01 | Chr02 | 3461606 | 3468234 | + | NAM | ||
| CDS seq | atgctgggccctcctcgccgcgggccggcgtacaagacgaagctgtgcgcgctgtggcagcgcggcaactgcaaccgcgacacctgcagcttcgcccacggccacggcgacatccgccgcccgccgtcctcccgcggcgccttcacgcaccacccggggagaagagattatagagccggtgatttcagaggcaggattgataggaggttttcacctcggaggaggcattcccctggaagagagtccaggggtcatcgtcccctttatgatagaaggccatcttctcgagaaagagattctagctattcacgatctcctagcaggaagagtgagaggaggcatgaaaagaagactgacgatggagaaaccaactcatctaggagtttaagtctctctgataacaacgatgaaaagaaaaaggacaaattctcaagtggtgatgagaaagaagaccacgaaaagcagctgaaacaaatacggctggatatggaggctttgcgtgacgataaaactcagatggaggtcattttggatgagaagatagatgaagtgcgcaagatctctagcaaagttaatgatcttgaggtgcagcttagaagggagaaagatgaatgccataggatgacctcaaagatgaagaagtttattaaagctcatgctcggtttttgaaggcacaagaagaagtgaaaaggtcacaagctcgtttcgagaggcttggtgatttgcttgcttcagatattttgaagcgtggtgctaatgaagaggggtccagtgtcaatgaagacctaaacgaaaggagtcctaatactgcagcaactaaaaagagatcaatcccatactcaacaagtgaagaagcgaaagctggtcaaaggttctcccgtcagacatgttttgccctccactggcatggctgctcatgctattga
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| Protein seq | MLGPPRRGPAYKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRAGDFRGRIDRRFSPRRRHSPGRESRGHRPLYDRRPSSRERDSSYSRSPSRKSERRHEKKTDDGETNSSRSLSLSDNNDEKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEKIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLLASDILKRGANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAGQRFSRQTCFALHWHGCSCY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0004890 | OsLiXu_02g0004890.03 | Chr02 | 3461574 | 3468153 | + | IsoSeq | ||
| CDS seq | aaaacgcgcactcgtgtgctttcgccttccattctccaaaccctcgcgggagatcggaattccccaccccggagcgccggatccaccaccgatcgtcggcggcggcggcggaggaggctgcgacggcggaggcggagatgctgggccctcctcgccgcgggccggcgtacaagacgaagctgtgcgcgctgtggcagcgcggcaactgcaaccgcgacacctgcagcttcgcccacggccacggcgacatccgccgcccgccgtcctcccgcggcgccttcacgcaccacccggaaggtgaac
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| Protein seq | KTRTRVLSPSILQTLAGDRNSPPRSAGSTTDRRRRRRRRLRRRRRRCWALLAAGRRTRRSCARCGSAATATATPAASPTATATSAARRPPAAPSRTTRKVN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 3461868 | 3463278 | + | OsLiXu_02g0004890.03 | OsLiXu_02g0004890.03,OsLiXu_02g0004890.01,OsLiXu_02g0004890.02 | All |
| SE | Chr02 | 3466606 | 3467514 | + | OsLiXu_02g0004890.03,OsLiXu_02g0004890.02 | OsLiXu_02g0004890.03,OsLiXu_02g0004890.01,OsLiXu_02g0004890.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.227141 | 2.162222 | 2.514400 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0161200 | RBH | 3.693549 | 2.770480 | 9.890930 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06584 | RBH | 2.039640 | 1.273022 | 1.757795 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0161200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004730 | RBH | 1.710220 | 8.287537 | 15.889673 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004930 | SBH | 1.021288 | 7.073989 | 12.113528 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004740 | RBH | 2.772591 | 14.246268 | 33.364807 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004640 | RBH | 0.482236 | 0.386348 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004690 | RBH | 15.039126 | 24.706997 | 45.278843 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0056700 | RBH | 19.766378 | 53.770962 | 89.348572 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004660 | SBH | 0.984976 | 1.192995 | 3.824199 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0059400 | RBH | 20.1574525 | 71.24247 | 66.974077 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005060 | RBH | 0.610908 | 0.680359 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004630 | RBH | 1.113986 | 25.026409 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004950 | RBH | 9.444281 | 13.715423 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026900 | RBH | 0.706407 | 0.412710 | 0.873265 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004660 | RBH | 0.804902 | 6.109559 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004710 | RBH | 1.301482 | 4.473851 | 5.907066 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004670 | RBH | 2.632471 | 23.982964 | 9.922792 |
