Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0026900 | OGI:06080010 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:29788290-29793833 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaagcttcatgccgagtgaaaccatgggatgctgtagtaacacagacgctaaagatcgcagcattacaaatttacaacacaatgatgaatccatgaataccaaacctaactcgaataggctgccagatacattatccatacaggctacttgaaatccatggtaataacgacgcacagtttgcccaaatgtgagaataacctgtttgagaacaatgcaactcgtcttcaccacagaagttatcgagatgcttaattcctaatgcccggtgtattaaatgatacattaagataaataacaggctggcagccttagtttcaggttagtctgtgaaaacgcaactggcatggcaatgaacgcatgttccatacttcaccctactccttactgctgaaatctttgtcaatctccatctgcatgaatttactagtccacaagaacatcatcatcatcaccgccctcatactgtaagcaaaatagggcacaaattgtcaggatgatgctctgagaaaaataccaaggcaatgtttggaaacggaagcataatactagtgggagggaattatgtggaggacgtatattagaaaaaaaattaaaacatggaaagagatcaagaaataaaagaaaatcatgcaattaccaaatgctgtcagagttgttttagatatcaaatttggatcataaagaacacatatgatacatataaatcatgcaattaccatatggtgtcacgaagttattctagttatcaaacttggatcacagaacacaaatgattcatttagaaccaatcagcaaaaccttgaaactgatggattatagtattctggttattagctgctaatgaacaaacattagattatcggatttgattctagccaaacgagctaccagatttgataataaacaaaaaggaaatcaactttgaatcataacattagctaatttttactgagaaatagcgacgagcaactagcaaccacagagaatataaagagaataagcaagaaagcatctcaccctatctgtaaaaacatttgcagaagaaacaacatttcctttctcattgttgtcaccatcccccaaattcttcttcacagataatagttcttttgcctcagttcccttgctgctctgaaaaggttctagagcatcttctggtcTAtatttctctgacataggatccctgttgtcataactctctctccttttcttccctgaagaagccacaggtgagagtaacaggatgtcaatcatttgtttatttaccacagaggaaaatcatggatgtgtctaatatctagttggcagcgttaatacggacaaaccattcgactattaaatagatatctccaaacatgtcatctagttagcttaccattccttccttcttcgctagttgagagggcaacggatctttttctagttgtttcatgattctgccgttgatcacttggactcatttcataagcattatatggatcttccttagcagcactagaaccctgatccttgctacacggcttcaaggtatctgaagcaagcaagtcagcgaacctctcaaaacgagcttgcgacctgcaccccctttaatgtgttaatagatgtaaagactaaaaaaagggttgtcttctcatatagacaaaatagaagtatgcagatcagataggtgacaaacaggaaaacctgcctctttaaatcatcctgagctttcacatagcgtgcatgtgctttgatgagtttctttgtttttgaggccatcctaagtgacagagcagtattatgaatagtcagacgacatggggatatttttaatcagctgaagaatccacaaactgaTGtttttgtcaaaaagagagaagattatgctcatgtgttgtagaaaTaaaaaacctttcgcaagcttctttttcatcgttcaattgtgattcaagatcagctattctgctagaaagtttggatgcttcattgatcttgccattcagtatcacctataatacaaggaagaaggatgcatcaatagggtacaatatcaacatacaggcaagaatgaacaataagaagaatttgaaacacctcaagagtacaataagtgcaacaggcgcaactaaaagagattcaagaagtgtatcatttgtcacttaaaaaggtaaactagccatcaatttgttcaattgtagcatcagttaacgtcaatattgacacatcatatctggagccatctgattatatctgaatggattgaacatcttatgaactttactcaacacaaaagttcccacagataatcattatagttaaggcaggaaaacaaaacagaaaaattgaagcagtccaaaatttatataaactaaacataaattgcagccaagtggtagaatgctcaacacaatccatgtagtgcaggtatcagcttttcaaatgtgcatgcatataataataaagcagaagtaactaatggttgtgctggacatgtaacatatgtatgaagaacattatacctccagtgaagatttctcctcatgtaatgcttccatatccagttgaatgcgttgcagctgcataacataagcaaatatataaaagagattcagtagcattgggacgactataactgtttgctagcgagatggattgcatagatcataatcaaacctgtgcttcattatcatgtttatcatcagctttgttgaatctatcatccttttttctatcttcgttatcagaggagttcaaactttctgatgaattagtttttccaccctcaagcttctttctatgccttccctcaatgaaagatccatggaatacataaatacaattgcaccaaacgaccaaattgcaagacaaaaacatgcagcggttacatggcaacatagtagaactatctttcgtgaaaacaacaaacccaaagggttccctcattaaacagagcaagataagatagtattatactctacagtaggttgctgtataaacactgcattaaatggtgcaacaaataataattttcttgaaaattttgaaaaaagaatcatttgtatgagaggattaatatacacatttctcagcttgcatatttaacaaaatggtcctgtgaacataattacttgcatggaagcctaagagcaacATGtttatatttgtctgatactctgatgtgtatgtagttgtgtagtttgtaatttataagtatatcaacaagcacaagtgcctttaacataagcatgccccaggctacctgctaacccttgggtgcatcacaagcaaagggcattaacaattagcaggaaccaagtcattcggtcacatgaaggtagactatatgcccaataaaatagataaaaacaggcataaccacatgtaaggactccattacaaagatgtatgtataccctagccccatacctcttcctgatgggagatcttgaatgactagagcctgcagggaagatttcaacatacaaaagttcagagattatatagaagtttaaaaatagaatagactagttacaacgaagaattttattggtagcatattacctctatctcgagagcgcggtctgtgatcacggaacaaatgatccctggcatctctttcaggggaattcctcctatggggtctcagatgcctgcctctaaagtcatcaggtctatggtctcgtctccctacaattcagtatggtagtttttacatacatatatgtacaaagaagcaatatgccacaaaagatagaggagctatacacatatgaggcagcacacaaacccattaagcttaccacaaccttgagccatatgattattcaattatcagtaagtagcagaggcaCcaacataaccccaggggggcataaaagagcagatccaatgagactaatgcatgatggagaccaatatatgatcacatatcacgtgtatgatgcaccacttaaaaaataaatccagcaccttgtaacgtgtcagtcatgagaagtgaataatggatggaatatccaatttttgacatcatactgagattatcacgaagaaagatcttccaaattccaatattgtcgaacaaacctaattccacttgtccagatattattggtattgacttcagattttatatttctgtgatcatacttggaatggcaggcaagaataaagcccaagaggagaccttgccgctgtgtattcagcaaatttgttacaattagttgcaaaagctgctaggtgctttagcacattaagataacatgcatctgactgaaaccacatgatatccctcaagaaatctcctgtagcaagataagcattccagcgaccataaaatgtctgattaccaactgaaaaggtgtgcaatgaaaataggatgtgtcatcctctgcaagtagtcggttggagaaaatctctctgggaacagctaatttgtacagtagcaaaaatatgattagcaaagatgtcacattgttcatgaaactttggcagccaaagtactataagaaaaggataatatatgggcgataaaacagtacaacaaaatgatatcacacaaactgatggaattattacgctctagttttgtatataaatgactctagtgctgatatcacatgaccaggtgcaggctgtagagtatatttcttccaacaagtagccagagatagaaaccaggtcatcagtgtttatcttacagggcagctcttgtcagatgttaccatggttggtattcttctaatcattttctcttactactagctcagttccacaacatttccaaaagtttctgcagaaagcacacagcgcagatggaattgatatctctttcacttcgctgtacaaccagcatcccgcactgtctgtcatattccccacatatgcagcccatcctctcaggatttataaacgaaatccaacataaacagatgaaacgatgtatactcctattttaaaaagaatgctctttcttggggccatggtaggacaccatgaatcttctcaaaatatgaatatCccccaaacttttcaaactgatagcagatcacactcaacccagtttcactccgtctgaataatttcctagaaaacaatcggcacaatctgtccacaatagaacatcggcggagacagtaattccattgcagaagaacagatttagagccacctagctgcggatcgagagcacacggcaaccgccgagaagcagaaaagcagatgggaaggggagagcgagacggggaaggggaggagggaGAGGgggtgcgcgcataccaggtccaccgcgaggcgggaacggggaacgaggcggctggccacggagctcggcgtcgccgtgggcgaagctgcaggaggcgcggttgcactcgccttgcctccacagcgcgcacagcttcgtcttgtacgccgggccgcggcggggaggacccatcatctccctcatctctctttcaccaatccaacccttctcccgcggcggcggcggcggcggcGAGgaggaggaggagacgagacgtggcggcggccagtggggagacgagaagagcaaagcacgagtgccgcac
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| CDS seq | atgccagggatcatttgttccgtgatcacagaccgcgctctcgagatagaggctctagtcattcaagatctcccatcaggaagagatagaaaaaaggatgatagattcaacaaagctgatgataaacatgataatgaagcacagctgcaacgcattcaactggatatggaagcattacatgaggagaaatcttcactggaggtgatactgaatggcaagatcaatgaagcatccaaactttctagcagaatagctgatcttgaatcacaattgaacgatgaaaaagaagcttgcgaaaggtcgcaagctcgttttgagaggttcgctgacttgcttgcttcagataccttgaagccgtgtagcaaggatcagggttctagtgctgctaaggaagatccatataatgcttatgaaatgagtccaagtgatcaacggcagaatcatgaaacaactagaaaaagatccgttgccctctcaactagcgaagaaggaaggaatgggaagaaaaggagagagagttatgacaacagggatcctatgtcagagaaataTAgaccagaagatgctctagaaccttttcagagcagcaagggaactgaggcaaaagaactattatctgtgaagaagaatttgggggatggtgacaacaatgagaaaggaaatgttgtttcttctgcaaatgtttttacagataggtatgagggcggtgatgatgatgatgttcttgtggactag
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| Protein seq | MPGIICSVITDRALEIEALVIQDLPSGRDRKKDDRFNKADDKHDNEAQLQRIQLDMEALHEEKSSLEVILNGKINEASKLSSRIADLESQLNDEKEACERSQARFERFADLLASDTLKPCSKDQGSSAAKEDPYNAYEMSPSDQRQNHETTRKRSVALSTSEEGRNGKKRRESYDNRDPMSEKYRPEDALEPFQSSKGTEAKELLSVKKNLGDGDNNEKGNVVSSANVFTDRYEGGDDDDVLVD |
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| Function | Zinc finger CCCH domain-containing protein 13 [UniProtKB/Swiss-Prot:Q6H7U2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0026900 | OsLiXu_06g0026900.02 | Chr06 | 29788290 | 29793833 | - | NAM | ||
| CDS seq | atgccagggatcatttgttccgtgatcacagaccgcgctctcgagatagaggctctagtcattcaagatctcccatcaggaagagatagaaaaaaggatgatagattcaacaaagctgatgataaacatgataatgaagcacagctgcaacgcattcaactggatatggaagcattacatgaggagaaatcttcactggaggtgatactgaatggcaagatcaatgaagcatccaaactttctagcagaatagctgatcttgaatcacaattgaacgatgaaaaagaagcttgcgaaaggtcgcaagctcgttttgagaggttcgctgacttgcttgcttcagataccttgaagccgtgtagcaaggatcagggttctagtgctgctaaggaagatccatataatgcttatgaaatgagtccaagtgatcaacggcagaatcatgaaacaactagaaaaagatccgttgccctctcaactagcgaagaaggaaggaatgggaagaaaaggagagagagttatgacaacagggatcctatgtcagagaaataTAgaccagaagatgctctagaaccttttcagagcagcaagggaactgaggcaaaagaactattatctgtgaagaagaatttgggggatggtgacaacaatgagaaaggaaatgttgtttcttctgcaaatgtttttacagataggtatgagggcggtgatgatgatgatgttcttgtggactag
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| Protein seq | MPGIICSVITDRALEIEALVIQDLPSGRDRKKDDRFNKADDKHDNEAQLQRIQLDMEALHEEKSSLEVILNGKINEASKLSSRIADLESQLNDEKEACERSQARFERFADLLASDTLKPCSKDQGSSAAKEDPYNAYEMSPSDQRQNHETTRKRSVALSTSEEGRNGKKRRESYDNRDPMSEKYRPEDALEPFQSSKGTEAKELLSVKKNLGDGDNNEKGNVVSSANVFTDRYEGGDDDDVLVD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0026900 | OsLiXu_06g0026900.01 | Chr06 | 29788290 | 29793833 | - | NAM | ||
| CDS seq | atgccagggatcatttgttccgtgatcacagaccgcgctctcgagatagaggctctagtcattcaagatctcccatcaggaagagatagaaaaaaggatgatagattcaacaaagctgatgataaacatgataatgaagcacagctgcaacgcattcaactggatatggaagcattacatgaggagaaatcttcactggaggtgatactgaatggcaagatcaatgaagcatccaaactttctagcagaatagctgatcttgaatcacaattgaacgatgaaaaagaagcttgcgaaaggtcgcaagctcgttttgagaggttcgctgacttgcttgcttcagataccttgaagccgtgtagcaaggatcagggttctagtgctgctaaggaagatccatataatgcttatgaaatgagtccaagtgatcaacggcagaatcatgaaacaactagaaaaagatccgttgccctctcaactagcgaagaaggaaggaatgggaagaaaaggagagagagttatgacaacagggatcctatgtcagagaaataTAgaccagaagatgctctagaaccttttcagagcagcaagggaactgaggcaaaagaactattatctgtgaagaagaatttgggggatggtgacaacaatgagaaaggaaatgttgtttcttctgcaaatgtttttacagataggtatgagggcggtgatgatgatgatgttcttgtggactag
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| Protein seq | MPGIICSVITDRALEIEALVIQDLPSGRDRKKDDRFNKADDKHDNEAQLQRIQLDMEALHEEKSSLEVILNGKINEASKLSSRIADLESQLNDEKEACERSQARFERFADLLASDTLKPCSKDQGSSAAKEDPYNAYEMSPSDQRQNHETTRKRSVALSTSEEGRNGKKRRESYDNRDPMSEKYRPEDALEPFQSSKGTEAKELLSVKKNLGDGDNNEKGNVVSSANVFTDRYEGGDDDDVLVD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 29791956 | 29793544 | - | OsLiXu_06g0026900.02 | OsLiXu_06g0026900.02,OsLiXu_06g0026900.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.706407 | 0.412710 | 0.873265 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46890 | RBH | 1.035099 | 0.439444 | 0.945778 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026590 | RBH | 0.377998 | 9.376039 | 5.912357 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026430 | RBH | 0.120463 | 2.587331 | 3.361584 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0026590 | RBH | 1.232681 | 1.304338 | 9.367763 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026210 | RBH | 0.000000 | 0.299144 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026690 | RBH | 6.725781 | 19.300280 | 14.915159 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0446500 | RBH | 5.6928885 | 22.9906835 | 27.4906435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026090 | RBH | 0.180435 | 0.317146 | 0.616732 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0428700 | RBH | 5.1587375 | 20.7163355 | 22.235402 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026540 | RBH | 0.138372 | 0.435626 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026640 | RBH | 0.491676 | 5.503461 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026260 | RBH | 6.024992 | 14.378775 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004890 | RBH | 2.227141 | 2.162222 | 2.514400 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026510 | RBH | 0.203418 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026400 | RBH | 0.270550 | 3.043574 | 1.371678 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026470 | RBH | 1.915543 | 24.184689 | 5.989247 |
