Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLiXu_02g0000660		OGI:02001240 \| 16/16			LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)			Chr02:468714-473264		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK59, OsRLCK59
DNA seq		atggcgagcatcgcttggcagcgttgcatcgtctacggactcaggcggctcgacgacgtcctcgacaactccgacgagatggcttgcgacgtggctggagctggtgatgccttgcgggcatcgagtagtgacgctccggccggcattctcctcgagcaactagccgatgagttcgaagaagatggtaacgtcgacgagagcgagcggacgtcagtgatgtagtgtaggggaggctgcgaccggcaaggcgacgacgtccaacgtctcggtgacatcacatcgccaggtaaagacgtcgtgggatggaggttgtggccggcgaggcaaggacttcgcggcagaggtagatgtgtcgccggcgaccgacatctctgatgagagggagcgacgcgatctccggccggcagtgcctccgacagacggagaggacgctatctccagcatgccgggcatcaccagaaactcgcctcgtcgccgtgttgtgtatgcatgacgatctgaacagaaaagcaggcaaaacaaaagaaagctaataagctatacccatggcaatggctgagtacatgctccggcgatcgtctccttctccgcgcgcctcctcgccggacgccgaggcactgtggccaacgtcaccggccgccgagcgcacgtgttcccgccggacgccgagattctccggccaaaatggtgcgtgtctctctctgtgactgtcgtgtgtgtgtattctgtctgtgtgttcctccctttctgtccacgttgtgtgaaatggcatggccttttatagtgaagaaaggcggttccagccagtacgtgcatggctcgatcagtgcacgcgtgatcagccaattgcctaatttagcgattagcatttctttccatatgctctgtgattcttccaattaaccgagatccttattcggcatgattccgtctgagttacactggccgatcttctttccaatttggaatgatacagagggatcattttcctcatattcgtatatgcgtgcaatctgtatatggtgtggaattctcctgtcagagcaatttctggtttctaagcatacgtgcgtgtccatggtttccatggaatcatcgatagggaatcaactgccggcaaatgacgtgattattgctctctaatgatgattctacagtggcatgcttccaaaatcaatccaccgtcatttcttcttttcgtcagtgatatcgtttatagctgtgctgccatttattctaccatctattccatgcatatatttatatattctgtcctggctgaaatacatcattaaatatatatatatacatatatacacgtgagtatatatgcacccgtatattaattgggcagcactgcacatgtcatataacattctcatgtacgccagattgtatcattagtgataattaattactaattttactactgtactgttattcccggaattaatattttgacgcacctcatttcttataaaataaaaaaaaggtgtacaaaatatcatcgaacagaaggtgagataccaccaagcttaacccaatgcactcgcctccagcaagttatactatacaacaacaagcttgaaggcagtatacccaccagatttggaacgcttcctgagctgaaaactttggatctctccaacaacgccctcagaggtgacataccaccattgttgggcagtagcccgtcttttgtatatgttgatcttgggggcaatcagctcacaggaggaatcccagagttcttggtaaatagctcatcccttcaagtgcttaggctcacgcaaaatagtcttacaggagagatccctccagccctcttcaacagctccacattgacaaccatttacctggaccgtaacaacttagttggttccataccacctgttacagcaattgctgcacctattcaataccttagtttagagcagaataaactcacaggagggataccagcctcactgggcaacctttcttccttggttcatgtttctttaaaagcaaattacttggtggggagcatccctaagagcctaagtaagatcccaaccctagagaggctagttctcacatacaacaatttgactggtcatgtgccacaggctattttcaacatatcatctttgaaatatcttagcatggccaataactcatcggccaactaccaccagatataggcaacagacttccaaaccttgaagccttaatcctatcaacaacacagttaaatgggccgatcccagcttctcttcgcaatatgtccaagctagaaatggtttatcttgctgctgctggtctcactggtatagtgccatcttttggatccttgccaaacttgcatgactttgatcttggatacaaccagcttgaagcaggggactggagcttcctctcatcccttgcaaactgcactcaactgaaaaagttggccttggatgccaattttctccaaggaaccttgcctagctcagtcggtaatcttccctcacagctcaactggttgtggctcaggcaaaacaaactttctgggacaattccatcagagattggtaaccttaagagtctcagtgttctgtatttggatgagaatatgtttagtgggagcatcccaccaaccattggaaatcttagcaacttagtggttctaagcttggcacaaaataacctctcgggccttattcctgattctattggcaaccttgcccaactaaccgagtttcatctagatgggaacaacttcaacgggagcataccttcaaacttaggaaagtggagacaattagagaagcttgatttctcccacaattcatttggtggaagcctgccaagtgaggtcttcaacatctcttccctgtcacaaagtttggacttgtcccacaatttgtttactgggcccataccactagaaattggcaacctcataaatcttggaagcatcagtatttcaaacaatcgcttgactggcgaaataccgtcaactctagggaagtgtgtgcttttggaataccttcacatggaagggaaccttcttactggaagcattccacgatctttcatgaacttaaaaagcatcaaggagctggatctctcttgtaacagcttgtcaggaaaagttccagagttcctcactctcttaagttctttgcagaaactcaacctttcattcaatgattttgaagggccaataccatcaaatggtgtctttggtaatgctagcagggttatcttggccggaaactacagactgtgtgcgaatgatccagggtatagcctgcccctttgccctgaatcaggatcacaaagtaaacacaagtctactattttgaaaatagtaattccaatcgcagtgtctgttgtaatttcattgttatgtttaatggctgttcttatcgaaagaagaaaacaaaaaccatgtttgcagcaatccagtgtgaacatgaggaagatatcatatgaagatatcgccaaagcaacagatgggttctctcccacaaatttggttggtttgggatcctttggggctgtttacaatggcatgttgccatttgagaccaatccagttgctattaaggtttccgatcttaacaagtacggagcacccacaagcttcaatgcggagtgtgaggcattaagatatattcgccatcgaaatcttgtcaaaatcattactttatgctctacgattgatccaaatggctatgattttaaagcacttgtctttcagtatatgccaaatggaagtctagaaatgtggctacatccagaggaccatgggcatggtaaaaagagattcctaactttgggtgaaaggattagcttagccttggacattgcatacgctttagattatcttcacaaccagtgtgtatccccagtaatacattgtgacatcaaaccaagcaatgttcttttggatcttgaaatgattgcatatgtcagtgactttgggttggcaagatttatgtgtgctaattcaacagcagcgcctggtaactctacaagtttggctgacttaaaaagatccattggatatattgcaccaggtgagagaaattggaaacttatactgatttattgacctgtatgcttcagccatcttattaacttatccaatgttacatggattgtagttttctgccattcacctttcttatgttttcaaatgaaaatgcagagtatggaatgggtgggcaaatatcaacaaagggtgatgtctacagctatggagtgctgttgttagagatattaactggaaagcgtccaactgatgaaaaattcaatgatggtttgagcctccacgatcgcgtggatgctgcatttccccacagagtaactgagattttagaccccaacatgctacacaatgatttggatggtggaaactccgaactgatgcaaagttgtctcctcccattggttaaggtggccctcatgtgctccatggcatcaccaaaagaccggttagggatggcacaagtttccactgaactacactccatcaagcaagcattccttgagctctccagtggaggaaaagtagtgtga More
CDS seq		atggcgagcatcgcttggcagcgttgcatcgtctacggactcaggcggctcgacgacgtcctcgacaactccgacgagatggcttgcgacgtggctggagctggtgatgccttgcgggcatcgagtagtgacgctccggccggcattctcctcgagcaactagccgatgagttcgaagaagatgaaggtgagataccaccaagcttaacccaatgcactcgcctccagcaagttatactatacaacaacaagcttgaaggcagtatacccaccagatttggaacgcttcctgagctgaaaactttggatctctccaacaacgccctcagaggtgacataccaccattgttgggcagtagcccgtcttttgtatatgttgatcttgggggcaatcagctcacaggaggaatcccagagttcttggtaaatagctcatcccttcaagtgcttaggctcacgcaaaatagtcttacaggagagatccctccagccctcttcaacagctccacattgacaaccatttacctggaccgtaacaacttagttggttccataccacctgttacagcaattgctgcacctattcaataccttagtttagagcagaataaactcacaggagggataccagcctcactgggcaacctttcttccttggttcatgtttctttaaaagcaaattacttggtggggagcatccctaagagcctaaatataggcaacagacttccaaaccttgaagccttaatcctatcaacaacacagttaaatgggccgatcccagcttctcttcgcaatatgtccaagctagaaatggtttatcttgctgctgctggtctcactggtatagtgccatcttttggatccttgccaaacttgcatgactttgatcttggatacaaccagcttgaagcaggggactggagcttcctctcatcccttgcaaactgcactcaactgaaaaagttggccttggatgccaattttctccaaggaaccttgcctagctcagtcggtaatcttccctcacagctcaactggttgtggctcaggcaaaacaaactttctgggacaattccatcagagattggtaaccttaagagtctcagtgttctgtatttggatgagaatatgtttagtgggagcatcccaccaaccattggaaatcttagcaacttagtggttctaagcttggcacaaaataacctctcgggccttattcctgattctattggcaaccttgcccaactaaccgagtttcatctagatgggaacaacttcaacgggagcataccttcaaacttaggaaagtggagacaattagagaagcttgatttctcccacaattcatttggtggaagcctgccaagtgaggtcttcaacatctcttccctgtcacaaagtttggacttgtcccacaatttgtttactgggcccataccactagaaattggcaacctcataaatcttggaagcatcagtatttcaaacaatcgcttgactggcgaaataccgtcaactctagggaagtgtgtgcttttggaataccttcacatggaagggaaccttcttactggaagcattccacgatctttcatgaacttaaaaagcatcaaggagctggatctctcttgtaacagcttgtcaggaaaagttccagagttcctcactctcttaagttctttgcagaaactcaacctttcattcaatgattttgaagggccaataccatcaaatggtgtctttggtaatgctagcagggttatcttggccggaaactacagactgtgtgcgaatgatccagggtatagcctgcccctttgccctgaatcaggatcacaaagtaaacacaagtctactattttgaaaatagtaattccaatcgcagtgtctgttgtaatttcattgttatgtttaatggctgttcttatcgaaagaagaaaacaaaaaccatgtttgcagcaatccagtgtgaacatgaggaagatatcatatgaagatatcgccaaagcaacagatgggttctctcccacaaatttggttggtttgggatcctttggggctgtttacaatggcatgttgccatttgagaccaatccagttgctattaaggtttccgatcttaacaagtacggagcacccacaagcttcaatgcggagtgtgaggcattaagatatattcgccatcgaaatcttgtcaaaatcattactttatgctctacgattgatccaaatggctatgattttaaagcacttgtctttcagtatatgccaaatggaagtctagaaatgtggctacatccagaggaccatgggcatggtaaaaagagattcctaactttgggtgaaaggattagcttagccttggacattgcatacgctttagattatcttcacaaccagtgtgtatccccagtaatacattgtgacatcaaaccaagcaatgttcttttggatcttgaaatgattgcatatgtcagtgactttgggttggcaagatttatgtgtgctaattcaacagcagcgcctggtaactctacaagtttggctgacttaaaaagatccattggatatattgcaccagagtatggaatgggtgggcaaatatcaacaaagggtgatgtctacagctatggagtgctgttgttagagatattaactggaaagcgtccaactgatgaaaaattcaatgatggtttgagcctccacgatcgcgtggatgctgcatttccccacagagtaactgagattttagaccccaacatgctacacaatgatttggatggtggaaactccgaactgatgcaaagttgtctcctcccattggttaaggtggccctcatgtgctccatggcatcaccaaaagaccggttagggatggcacaagtttccactgaactacactccatcaagcaagcattccttgagctctccagtggaggaaaagtagtgtga More
Protein seq		MASIAWQRCIVYGLRRLDDVLDNSDEMACDVAGAGDALRASSSDAPAGILLEQLADEFEEDEGEIPPSLTQCTRLQQVILYNNKLEGSIPTRFGTLPELKTLDLSNNALRGDIPPLLGSSPSFVYVDLGGNQLTGGIPEFLVNSSSLQVLRLTQNSLTGEIPPALFNSSTLTTIYLDRNNLVGSIPPVTAIAAPIQYLSLEQNKLTGGIPASLGNLSSLVHVSLKANYLVGSIPKSLNIGNRLPNLEALILSTTQLNGPIPASLRNMSKLEMVYLAAAGLTGIVPSFGSLPNLHDFDLGYNQLEAGDWSFLSSLANCTQLKKLALDANFLQGTLPSSVGNLPSQLNWLWLRQNKLSGTIPSEIGNLKSLSVLYLDENMFSGSIPPTIGNLSNLVVLSLAQNNLSGLIPDSIGNLAQLTEFHLDGNNFNGSIPSNLGKWRQLEKLDFSHNSFGGSLPSEVFNISSLSQSLDLSHNLFTGPIPLEIGNLINLGSISISNNRLTGEIPSTLGKCVLLEYLHMEGNLLTGSIPRSFMNLKSIKELDLSCNSLSGKVPEFLTLLSSLQKLNLSFNDFEGPIPSNGVFGNASRVILAGNYRLCANDPGYSLPLCPESGSQSKHKSTILKIVIPIAVSVVISLLCLMAVLIERRKQKPCLQQSSVNMRKISYEDIAKATDGFSPTNLVGLGSFGAVYNGMLPFETNPVAIKVSDLNKYGAPTSFNAECEALRYIRHRNLVKIITLCSTIDPNGYDFKALVFQYMPNGSLEMWLHPEDHGHGKKRFLTLGERISLALDIAYALDYLHNQCVSPVIHCDIKPSNVLLDLEMIAYVSDFGLARFMCANSTAAPGNSTSLADLKRSIGYIAPEYGMGGQISTKGDVYSYGVLLLEILTGKRPTDEKFNDGLSLHDRVDAAFPHRVTEILDPNMLHNDLDGGNSELMQSCLLPLVKVALMCSMASPKDRLGMAQVSTELHSIKQAFLELSSGGKVV
Function		Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_02g0000660	OsLiXu_02g0000660.01	Chr02	468714	473264	+	NAM
CDS seq	atggcgagcatcgcttggcagcgttgcatcgtctacggactcaggcggctcgacgacgtcctcgacaactccgacgagatggcttgcgacgtggctggagctggtgatgccttgcgggcatcgagtagtgacgctccggccggcattctcctcgagcaactagccgatgagttcgaagaagatgaaggtgagataccaccaagcttaacccaatgcactcgcctccagcaagttatactatacaacaacaagcttgaaggcagtatacccaccagatttggaacgcttcctgagctgaaaactttggatctctccaacaacgccctcagaggtgacataccaccattgttgggcagtagcccgtcttttgtatatgttgatcttgggggcaatcagctcacaggaggaatcccagagttcttggtaaatagctcatcccttcaagtgcttaggctcacgcaaaatagtcttacaggagagatccctccagccctcttcaacagctccacattgacaaccatttacctggaccgtaacaacttagttggttccataccacctgttacagcaattgctgcacctattcaataccttagtttagagcagaataaactcacaggagggataccagcctcactgggcaacctttcttccttggttcatgtttctttaaaagcaaattacttggtggggagcatccctaagagcctaaatataggcaacagacttccaaaccttgaagccttaatcctatcaacaacacagttaaatgggccgatcccagcttctcttcgcaatatgtccaagctagaaatggtttatcttgctgctgctggtctcactggtatagtgccatcttttggatccttgccaaacttgcatgactttgatcttggatacaaccagcttgaagcaggggactggagcttcctctcatcccttgcaaactgcactcaactgaaaaagttggccttggatgccaattttctccaaggaaccttgcctagctcagtcggtaatcttccctcacagctcaactggttgtggctcaggcaaaacaaactttctgggacaattccatcagagattggtaaccttaagagtctcagtgttctgtatttggatgagaatatgtttagtgggagcatcccaccaaccattggaaatcttagcaacttagtggttctaagcttggcacaaaataacctctcgggccttattcctgattctattggcaaccttgcccaactaaccgagtttcatctagatgggaacaacttcaacgggagcataccttcaaacttaggaaagtggagacaattagagaagcttgatttctcccacaattcatttggtggaagcctgccaagtgaggtcttcaacatctcttccctgtcacaaagtttggacttgtcccacaatttgtttactgggcccataccactagaaattggcaacctcataaatcttggaagcatcagtatttcaaacaatcgcttgactggcgaaataccgtcaactctagggaagtgtgtgcttttggaataccttcacatggaagggaaccttcttactggaagcattccacgatctttcatgaacttaaaaagcatcaaggagctggatctctcttgtaacagcttgtcaggaaaagttccagagttcctcactctcttaagttctttgcagaaactcaacctttcattcaatgattttgaagggccaataccatcaaatggtgtctttggtaatgctagcagggttatcttggccggaaactacagactgtgtgcgaatgatccagggtatagcctgcccctttgccctgaatcaggatcacaaagtaaacacaagtctactattttgaaaatagtaattccaatcgcagtgtctgttgtaatttcattgttatgtttaatggctgttcttatcgaaagaagaaaacaaaaaccatgtttgcagcaatccagtgtgaacatgaggaagatatcatatgaagatatcgccaaagcaacagatgggttctctcccacaaatttggttggtttgggatcctttggggctgtttacaatggcatgttgccatttgagaccaatccagttgctattaaggtttccgatcttaacaagtacggagcacccacaagcttcaatgcggagtgtgaggcattaagatatattcgccatcgaaatcttgtcaaaatcattactttatgctctacgattgatccaaatggctatgattttaaagcacttgtctttcagtatatgccaaatggaagtctagaaatgtggctacatccagaggaccatgggcatggtaaaaagagattcctaactttgggtgaaaggattagcttagccttggacattgcatacgctttagattatcttcacaaccagtgtgtatccccagtaatacattgtgacatcaaaccaagcaatgttcttttggatcttgaaatgattgcatatgtcagtgactttgggttggcaagatttatgtgtgctaattcaacagcagcgcctggtaactctacaagtttggctgacttaaaaagatccattggatatattgcaccagagtatggaatgggtgggcaaatatcaacaaagggtgatgtctacagctatggagtgctgttgttagagatattaactggaaagcgtccaactgatgaaaaattcaatgatggtttgagcctccacgatcgcgtggatgctgcatttccccacagagtaactgagattttagaccccaacatgctacacaatgatttggatggtggaaactccgaactgatgcaaagttgtctcctcccattggttaaggtggccctcatgtgctccatggcatcaccaaaagaccggttagggatggcacaagtttccactgaactacactccatcaagcaagcattccttgagctctccagtggaggaaaagtagtgtga More
Protein seq	MASIAWQRCIVYGLRRLDDVLDNSDEMACDVAGAGDALRASSSDAPAGILLEQLADEFEEDEGEIPPSLTQCTRLQQVILYNNKLEGSIPTRFGTLPELKTLDLSNNALRGDIPPLLGSSPSFVYVDLGGNQLTGGIPEFLVNSSSLQVLRLTQNSLTGEIPPALFNSSTLTTIYLDRNNLVGSIPPVTAIAAPIQYLSLEQNKLTGGIPASLGNLSSLVHVSLKANYLVGSIPKSLNIGNRLPNLEALILSTTQLNGPIPASLRNMSKLEMVYLAAAGLTGIVPSFGSLPNLHDFDLGYNQLEAGDWSFLSSLANCTQLKKLALDANFLQGTLPSSVGNLPSQLNWLWLRQNKLSGTIPSEIGNLKSLSVLYLDENMFSGSIPPTIGNLSNLVVLSLAQNNLSGLIPDSIGNLAQLTEFHLDGNNFNGSIPSNLGKWRQLEKLDFSHNSFGGSLPSEVFNISSLSQSLDLSHNLFTGPIPLEIGNLINLGSISISNNRLTGEIPSTLGKCVLLEYLHMEGNLLTGSIPRSFMNLKSIKELDLSCNSLSGKVPEFLTLLSSLQKLNLSFNDFEGPIPSNGVFGNASRVILAGNYRLCANDPGYSLPLCPESGSQSKHKSTILKIVIPIAVSVVISLLCLMAVLIERRKQKPCLQQSSVNMRKISYEDIAKATDGFSPTNLVGLGSFGAVYNGMLPFETNPVAIKVSDLNKYGAPTSFNAECEALRYIRHRNLVKIITLCSTIDPNGYDFKALVFQYMPNGSLEMWLHPEDHGHGKKRFLTLGERISLALDIAYALDYLHNQCVSPVIHCDIKPSNVLLDLEMIAYVSDFGLARFMCANSTAAPGNSTSLADLKRSIGYIAPEYGMGGQISTKGDVYSYGVLLLEILTGKRPTDEKFNDGLSLHDRVDAAFPHRVTEILDPNMLHNDLDGGNSELMQSCLLPLVKVALMCSMASPKDRLGMAQVSTELHSIKQAFLELSSGGKVV More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.062378	0.000000	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0211800	SBH	0.720620	0.353773	0.376538
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g01800	RBH	0.139563	0.0	0.129845
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0211800	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0008530	SBH	0.000000	0.0	0.584907
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0000690	SBH	0.0	0.606034	0.471768
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0000660	SBH	0.168008	0.000000	0.901056
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0008360	SBH	0.0	0.011065	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0008390	SBH	0.000000	0.000000	1.090552
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_02G0007400	RBH	0.417008	1.525469	0.7026865
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0008280	SBH	0.000000	0.082765	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0007400	RBH	0.3707675	1.4773145	4.691201
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0008750	SBH	0.030803	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0000640	RBH	0.0	2.501710	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0008630	SBH	0.762375	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0024690	SBH	0.035031	0.082412	0.021348
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0000650	SBH	0.0	0.390719	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G000670	RBH	0.0	0.0	0.120083
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0008490	SBH	0.000000	0.000000	0.000000

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.