Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0015270 | OGI:01040560 | 2/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:13527771-13531198 | ||||||||
| Gene Symbol | RLCK34, OsRLCK34 | ||||||||||
| DNA seq | atggtcactgcggctaagcgttggccacttaattctgttccatgtttcagcatcatcatgcagcacctccttgtgatactattactgatgtcagtgatgatctcctcttccgctggtcgtcagccatgcaaatgctctggggaagaccaaaagaagaggcccagtgtgagcgctttctatgacacaatctacggcacctatccgatcatcacggattatggtccgtactcttataccaattcatcagctgggttggtccctattggcccgttaacttggcgacgcagctctctgttaacttggcgacccagagttctgctgccgatcattagcatcgcctttaacgtaagcgtctatcggccacaaagccaggccgaagaagcagcgacgacgtcccaaggtctggccttcatcctccttcctgtaaaacacatatactcctatttatacaacaatggttctgctggaataccggtggtccatgagaatggctccctcgtcctgaacaaccccgacaccaaatctgcggccatgacgaattatcctatccgtgacaccaacaccagcgtttccatcggtacagtaaagagcgtgactaattatagcgattcgtcgtctgcctcctctgccatgggtatcaacattaccattatcccaaaggaggccagcaatcagcaagcaggaatggagtacgcagtatggattgatttcgaccgaccagttggagttcaatccaccaggatatcggtctttgtcgaaggggcagcaatgccaaaacctgacaagcccataattgccagcgacatcaacatcagcgacagcgaatatgcgaggctgcaaggctgcttcttctcctcgatagggcaactctcccagatccatggcctgacggtgacgtccgacgaccttcgtgaccaaggtagtagctcatcgaggttggcgaccatactgggttcagttttcggctcactaggtgggagcgccgtcattggcgctgttgtggcatggtacctcaactcctcctacaggaggtggaagaaggagctggatcagctggccaagtccatgcagagcctccctggggttcctgtcaagatcagcttcaccgatatcagaacggccaccaacaacttccacgacaccaggaagctgggaagaggcgcgtttggcgccgtctacagatgccagcttcagtccttgaaggaacaaccgatggaggtggctgtgaagaagtttacacgcagcgacactcgctgctacgaagacttcctcgcagaggtcagcatcatcaatcgtctgcgccataagaatatcgtccctctcgtcggttagtcctcacaattttctacacttgtaccctttatcaatcatctgtttctttttattctttattaactcattaaagttatcaactataatttaattatagatatcatccaactctataattttaatataaagttttttctttatcagacttcatatgaaaaagttatatgtatatatatgtatttttttataagttgattcctaaaggcatgcattataacactttagtcgacctccactaaaaatcaattttcagagacggtgctcctatgggttactatataggcgggtctttttagaccgcttgtaaaaatgtatcattgaaaatggtttttttttatgatttttagtagtggagattgcattagacttctcaaaggaaaacaaaaaaagttcataagttatttttcttggaactgggcaaaccaatccaaatccattatatttagaaagtttcattccttcaatccatttgacactattggaataaaattctaaacatatgaatcctttacaaattctgacaaatcctactatccaaagaaggcttatgacataaatctccccatagaccatgtgtatttattgtttataaacagaataaaaaagaagtaatatctctaatgattgtagatcacttgataattatataagaaagaaatatgtaaaccataaactatatatactttggtatactaaatgataatgtctatcatatttaaccataaatcgctttgtgcgggttatatgtaaactcatctctcactattacttattatcattgtcttgaaaccgaagtgcctttaaatatatggaattgcatccataaaaaatcaaacctaatacatcattaatacaataaaccgttcacatccatttcataccaaagtccaatgtcttacttatgtttaaatctatatataaatatttgaaataccgcttctatcaattaatgggatgacaccattaaaattaggtatcatgtcccactaacccgtgaagccgatcatagccatcaaggctttcttcttttataccttgaaacatgggtcttgtatagacgtagccatgtatgtccctcatgacaggatggtgcataactttaacgtctaattcactataagcacacttataaaggattgcatgaataaataggtaaattgagctctattgataatagtgatttctcgtcggggtcatgtcaactcagccatatgtatgcagtatgcccttatcatacttacagtaatgtatcaagttgtcttgatcatgcttggcgctcttaattaagggaatgacagaggaaagatggacgtgatgaaaatattattttaaagttttgagtttaagttgttgcatagaatagatatgatttgtttgtagttaattggtactaccaaattttaggagaaaatcctttatatacccctgaaattttagctaatcccttatatgcctcttaattttgcttacttccttgtatacctccaaattttgattttgatccgttctataccgctcccgtcagttgaccattagttgatcgtctaatttctataaaaatgaccattttaccttttagatgaacgtagaaatttgtgaattacattattgaaaatgcagaagtttgtcgcatgagactattatagttatgagtttgttgtgccatgcattatttatggcaatttatttttagacaatgaaatAaaaaatatgtatttattttattttttaaaaagtcataaaaatgaggagcattcatataaagataagcctatcaattctcacgatattatttttatgaatattcccgatgaaaaaatccattgtccttttaaaatttcaactaaaaatttaatttattatatttgttttaattccaaaaattgtgtcaaaattttctgcactaattatttagtggccgatcattaaattctccgaacctaatgaagcgagttgtgttgtcacgcattaaaattttcgtatgtatacatacttctgtcgcagtcagctagttaacatcgataaaatttcagggtggtcatacaacaaaggagaacccctacttatctacgaatacatgccaaatggcagcctag
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| CDS seq | atggtcactgcggctaagcgttggccacttaattctgttccatgtttcagcatcatcatgcagcacctccttgtgatactattactgatgtcagtgatgatctcctcttccgctggtcgtcagccatgcaaatgctctggggaagaccaaaagaagaggcccagtgtgagcgctttctatgacacaatctacggcacctatccgatcatcacggattatggtccgtactcttataccaattcatcagctgggttggtccctattggcccgttaacttggcgacgcagctctctgttaacttggcgacccagagttctgctgccgatcattagcatcgcctttaacgtaagcgtctatcggccacaaagccaggccgaagaagcagcgacgacgtcccaaggtctggccttcatcctccttcctgtaaaacacatatactcctatttatacaacaatggttctgctggaataccggtggtccatgagaatggctccctcgtcctgaacaaccccgacaccaaatctgcggccatgacgaattatcctatccgtgacaccaacaccagcgtttccatcggtacagtaaagagcgtgactaattatagcgattcgtcgtctgcctcctctgccatgggtatcaacattaccattatcccaaaggaggccagcaatcagcaagcaggaatggagtacgcagtatggattgatttcgaccgaccagttggagttcaatccaccaggatatcggtctttgtcgaaggggcagcaatgccaaaacctgacaagcccataattgccagcgacatcaacatcagcgacagcgaatatgcgaggctgcaaggctgcttcttctcctcgatagggcaactctcccagatccatggcctgacggtgacgtccgacgaccttcgtgaccaaggtagtagctcatcgaggttggcgaccatactgggttcagttttcggctcactaggtgggagcgccgtcattggcgctgttgtggcatggtacctcaactcctcctacaggaggtggaagaaggagctggatcagctggccaagtccatgcagagcctccctggggttcctgtcaagatcagcttcaccgatatcagaacggccaccaacaacttccacgacaccaggaagctgggaagaggcgcgtttggcgccgtctacagatgccagcttcagtccttgaaggaacaaccgatggaggtggctgtgaagaagtttacacgcagcgacactcgctgctacgaagacttcctcgcagaggtcagcatcatcaatcgtctgcgccataagaatatcgtccctctcggtggtcatacaacaaaggagaacccctacttatctacgaatacatgccaaatggcagcctag
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| Protein seq | MVTAAKRWPLNSVPCFSIIMQHLLVILLLMSVMISSSAGRQPCKCSGEDQKKRPSVSAFYDTIYGTYPIITDYGPYSYTNSSAGLVPIGPLTWRRSSLLTWRPRVLLPIISIAFNVSVYRPQSQAEEAATTSQGLAFILLPVKHIYSYLYNNGSAGIPVVHENGSLVLNNPDTKSAAMTNYPIRDTNTSVSIGTVKSVTNYSDSSSASSAMGINITIIPKEASNQQAGMEYAVWIDFDRPVGVQSTRISVFVEGAAMPKPDKPIIASDINISDSEYARLQGCFFSSIGQLSQIHGLTVTSDDLRDQGSSSSRLATILGSVFGSLGGSAVIGAVVAWYLNSSYRRWKKELDQLAKSMQSLPGVPVKISFTDIRTATNNFHDTRKLGRGAFGAVYRCQLQSLKEQPMEVAVKKFTRSDTRCYEDFLAEVSIINRLRHKNIVPLGGHTTKENPYLSTNTCQMAA |
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| Function | L-type lectin-domain containing receptor kinase IX.2 [UniProtKB/Swiss-Prot:Q9LSL5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0015270 | OsLiXu_01g0015270.01 | Chr01 | 13527771 | 13531198 | + | NAM | ||
| CDS seq | atggtcactgcggctaagcgttggccacttaattctgttccatgtttcagcatcatcatgcagcacctccttgtgatactattactgatgtcagtgatgatctcctcttccgctggtcgtcagccatgcaaatgctctggggaagaccaaaagaagaggcccagtgtgagcgctttctatgacacaatctacggcacctatccgatcatcacggattatggtccgtactcttataccaattcatcagctgggttggtccctattggcccgttaacttggcgacgcagctctctgttaacttggcgacccagagttctgctgccgatcattagcatcgcctttaacgtaagcgtctatcggccacaaagccaggccgaagaagcagcgacgacgtcccaaggtctggccttcatcctccttcctgtaaaacacatatactcctatttatacaacaatggttctgctggaataccggtggtccatgagaatggctccctcgtcctgaacaaccccgacaccaaatctgcggccatgacgaattatcctatccgtgacaccaacaccagcgtttccatcggtacagtaaagagcgtgactaattatagcgattcgtcgtctgcctcctctgccatgggtatcaacattaccattatcccaaaggaggccagcaatcagcaagcaggaatggagtacgcagtatggattgatttcgaccgaccagttggagttcaatccaccaggatatcggtctttgtcgaaggggcagcaatgccaaaacctgacaagcccataattgccagcgacatcaacatcagcgacagcgaatatgcgaggctgcaaggctgcttcttctcctcgatagggcaactctcccagatccatggcctgacggtgacgtccgacgaccttcgtgaccaaggtagtagctcatcgaggttggcgaccatactgggttcagttttcggctcactaggtgggagcgccgtcattggcgctgttgtggcatggtacctcaactcctcctacaggaggtggaagaaggagctggatcagctggccaagtccatgcagagcctccctggggttcctgtcaagatcagcttcaccgatatcagaacggccaccaacaacttccacgacaccaggaagctgggaagaggcgcgtttggcgccgtctacagatgccagcttcagtccttgaaggaacaaccgatggaggtggctgtgaagaagtttacacgcagcgacactcgctgctacgaagacttcctcgcagaggtcagcatcatcaatcgtctgcgccataagaatatcgtccctctcggtggtcatacaacaaaggagaacccctacttatctacgaatacatgccaaatggcagcctag
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| Protein seq | MVTAAKRWPLNSVPCFSIIMQHLLVILLLMSVMISSSAGRQPCKCSGEDQKKRPSVSAFYDTIYGTYPIITDYGPYSYTNSSAGLVPIGPLTWRRSSLLTWRPRVLLPIISIAFNVSVYRPQSQAEEAATTSQGLAFILLPVKHIYSYLYNNGSAGIPVVHENGSLVLNNPDTKSAAMTNYPIRDTNTSVSIGTVKSVTNYSDSSSASSAMGINITIIPKEASNQQAGMEYAVWIDFDRPVGVQSTRISVFVEGAAMPKPDKPIIASDINISDSEYARLQGCFFSSIGQLSQIHGLTVTSDDLRDQGSSSSRLATILGSVFGSLGGSAVIGAVVAWYLNSSYRRWKKELDQLAKSMQSLPGVPVKISFTDIRTATNNFHDTRKLGRGAFGAVYRCQLQSLKEQPMEVAVKKFTRSDTRCYEDFLAEVSIINRLRHKNIVPLGGHTTKENPYLSTNTCQMAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0535400 | SBH | 0.209866 | 0.342551 | 1.624012 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g23970 | SBH | 0.0 | 0.131870 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0535400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0035800 | SBH | 0.0 | 2.175902 | 0.525878 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035300 | SBH | 0.0 | 0.880758 | 0.130647 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035670 | SBH | 0.618417 | 0.897166 | 0.532875 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0034790 | SBH | 1.765395 | 5.765265 | 0.493980 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0025300 | SBH | 2.4353845 | 10.1804115 | 1.4657045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015300 | SBH | 0.1515845 | 0.0066435 | 0.038852 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0034720 | SBH | 0.281199 | 10.927666 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001340 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015220 | RBH | 0.106117 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
