Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0535400 | OGI:01062220 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:19454154-19458225 | ||||||||
| Gene Symbol | RLCK34, OsRLCK34, - | ||||||||||
| DNA seq | GAACTCAGTGTCGAATAGAATTTTTCTTCGATCAACCACTAAAAATGTCCTTGAAATGCCCAAACGATCCCAACAAGAGCAAAACAAAGATCCTTGATTGCAAACCAAACAATAAAAACTTCCATTGTTTTCTAGAGGAAACAAAGAACATCACATAATCATTTAATCATCCAGCTTCGGGCCAGGAATATTCTTCTATCATCTCAAAAACTGCTTGCAACAGGAGACCTTAGTTAGTACTGTTCCAATGAAAGCTGACTTGTCATCCAATGCCGAATGCACTGGTCCTCTGTGTTACTTGAGTATCCAGAGGATAAGGTCACCTGACATGGATAATGCCAAATGTAGGCATGATTAATCTCATCAACAGCAACTTACATGTTATTTAGATTGTGAACTGGCTATCGACAACCTGGGGCTGTAATGGTCACTTCATTCACACTGCACAGCTCAAGATCAATAGCTGACGACGCCTCTCCGTTTCTGACCCTTACGTTGAAGTATGCTGGGTGCTTGGGCACAGGCAGACTCACCCCTTCACTGCTTAGCATTGCCACGACATCTGACATGGTAGGTCGATCAGCCGCATTCTCCTGTACACATAGCAATGCGATGTTGACGCATTTCATCATCAGTGGTGCTTCTACTAGGCAATCGGTTAACAGGACCACATCTATGAGTTTGAGCCATCTTCCCTCTGTCCATAGCTGCCAGGCCTGTAAAAATGCACGGTCAGAACTTACCCACGAAGTGATGCTAGCTAGCTAGTATATAAACATGCATAAGAGCACTTACATATCCTAGAAGATTTAGGAAGTCACCATACTGGTGGAAGCCAGGATTTCTTTTCCCACTTACGATCTCGAGGGTCAGAACACCGAAACTGAACACATCGGATTTGACCGAGAAGAGACCCTCAGAAGCATACTCAGGAGCCATGTAACCGCTGAAAAAACAAATCATAATCAGTGCTGGTACAAAATCTTTAAATTTTTGGATGTTAACTCATGTTAATGATATAGTCAAGTAATATGTGCTTACTATGTACCCGCCACCCTTTTTGTGTTTCCTTCAATATCATTAGAGCTGAATATTTTAGCTAGCCCAAAATCTGAAATTTTAGGATTCATATTATGATCCAAGAGAACATTACTTGCTTTCAGATCTCTATGTGTGACGCGCAAACGGGAGTGCTTGTGTAGGTACAGGAGTCCTTGTGCTATCCCTTCAATTATTGCCAGTCGTTTGTTCCAATCTAGCAAAGCTCTTTGATTTGGCTCATCTGCACATACGTGATACGTCATATAAGGTTTGCCCGAACAGCCTAACTGAAGATACGCTTCACCAATGTTTCTTACTTGAACCAAATAATCCAAAAGATGTAATTATACCAAGTATAGCAAACAACATAATATCAGTGAGGCTTTAGATACCAAATATGAAGAAGTCTAGGCTTTTTGTTTGGTAGATATTCATACACCAATATCTTCTCTTCTCCTTTACTGCAGCAACCCAGGAGTCTAACTAAATTGGAGTGCTGGAGTTTGGCTATAAGTTGAATTTCATTTCTGAACTCCACAAAACCTTGACCAGAATGTGAATCAAGCCTCTTAACAGCAATCTCTAATCTGTCAAGTTTACCCTGAAAATTTAAGGCGTTGATCAGTAAATACTGGGATTAATCTAAATTATGAGCAACGACTTGATTGTGTGGCATGTTAGGCCATTCTTAGAACTGATCAGTATTCACTATTCATGCGAAGTATAGTTAACCTTGTATATTGTACCAAAGCCACCTTCACCAATTTTGTTTTCTCGAGAGAAGTTATTGGTTGCACGTATTATGCATGCAAAGTCAAACAACAACTCCGAGCTCTGTCCTTGTATGGGCCAGGCTAGTGCTTCCTCTTCATACAAGTATGTAGAAGTTTTTTCTTGCAGGGAAGCTTTTCCTGAGTTGAGAATTGTTGTCATGTTCAGTTAGAGCCAGTAAAGCATTCATATACCTATTACTGGAATTGAAATTTGTGACCAACAAATTGCACAAAATAGCATTTCAACACCTAACCTATTTTATTCCTTCTGATGATCCATCCGAAGCCAAGGATGACGCAGAAGAGAAGTACACCCATCACGGGAAACACTATGCTTACAGCCAAACCACTGAGCTTTCTCTTGCTTCTATTGCCTAAAAATGGTAGTTGTTAAATATACACATTCATGGATGAACAAGGCACTAATAAAAGTCTCTACTTCAGATAGATGAGGTACATTGACATACCATCTGCAGATGTTGAATTCGTTGATGGCCCCATAATTCGCATGGGCTCCCCGTTGTAGAATATGCTTGTTTCGAACCTTATCAAACAACGCACCCCAATAATCCTTCCCCCTCTCCTCCCATCAAACCACTTCAGAGACTCCTGAATAGTACCCTGAAGACACTTGAAGCAACTTTCTGAAGAAAGGTCTGGTGTGCACTGCGTCAGGGAATAGATTGTCGGAAAGGCTCCACCGATGTCCATCTTCGCGGTGGCAAATCGCTTTTTGGTGCTGTACGCTGCCCACTTTGCTGTTTCACGAAGTAGTGTATACACGGTGCCAGTGACAAAGGAAATACTCTCGGCGTTGTTGGGTCCCACCCAGGGAACACTGGCTCGGTAATGTTGTTTATGTTCCATGCTGCAGTCTCTGGGATATTACTGGCAGCAGAGACAAAGTCCTGCTCGGAGAACCAAAGCTGGCATGTGTCCCTGTATACAGTCACTTCCTTACTGCGGCCACACCACTGCTGTACGTCGTCCACAGATGTTGAGGAGAGGCACGCAGCGCAGTCCGCACCCGTGACGTCCCCTCGGCAGAGCGTGAGGCCGTAGACGGTGTCTGGGGCGGCGCCAATGGAGCCAGCGGAGAAGCCACCGGACGCCGAGGCGTTCGCCACGATTGCAGCGACCAGACTAGCAAAAGGTTGGCCTCAAACGTGCTGTTCGGTTGGTAGGTCCGTCGTGCGGCCGTCGAGTTGCAGAACCTGGATATGGGGTTCAGAACTGGCACTGTGCCACTCGCTCCCCCGGTCGCCGATGCTGAGGGGGCAAAGATCAAGAGCAAGATGAGGAGATACAACATAGTAGTTTGGTGGTGGTTGGGCAGTGGGCACAAGCATGAATCACAAGTGGAGAGTTTGTTGAGATGCCTCAGAAAGGAAGAAGAAAAGTTAGTATTTTCGTAAAACTCTTGAAAGAATTCTCATCAAATGGGCGTGTGCTTGGCTTAAGCCAAGGAGTCATAGGGCCTGATTGGGGGAGCTTCTAGCTGCTGCAGCTTCTTCCAGAATTAGAAGCTCCCCCCAAACAGTCCAGCTGCTGCAGCTTCTTCCAGAATCAGAAGCTCCCCCCAAACAGTCCAGCTTTTGGTTCAGATTCTGAGAGAAGCTATAGTTGTAGAATCAAGAAAATAAACTAGAAGCAGAAACTGGAAAACCTAGCTTTTCCAGATTCTCGTAAGCTGGCTTTCAACCGGCTGCTTTTCAGAATTTTAAGCTCCCTCAAACTGACCCATAGTGCGGATACAGTAGTTCAGTAGATTGTGCCAAAAGGTAATGGAAGGGAACGTTTTGTTCATCTCTTACCTGATTCTTGCGCGCGTCAGTCCACCCACCGTGGTGTGGGTGAGGTCAAAATCAACACTGATTCCGCGACAGGAATTCGTCGTCAGATAGCAGGCATGTAGCAGACCAGCCGACCAGATTATTATCATCCTCCTGGTAGATCTGGGTAACAAGAACAAGAGAGTTCGAGTGGATGGCTAGCTAGACCTGAAAAATCACTGCTTCTATTAGTGGGACTTGGACTGGATCTGGGAATTGGGATTAGATTATAATACCTTGAGAAGACATGCATATTCGCTCGACAGGGTGTGTGTGACTCTGTGACGGCGGCAAGCCGGCACTGCCCACCGGAGCGCGCGGACGGCGGACTGACCGCCGTGGCATCGCCATCGCGGGAGCCGGGAGTGCCGCTCGTGGCTGCCGGTCGGGCAGTCCTCGCTTGCTGTTGCAGCGGACTGACCATTC
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| CDS seq | ATGGAACATAAACAACATTACCGAGCCAGTGTTCCCTGGGTGGGACCCAACAACGCCGAGAGTATTTCCTTTGTCACTGGCACCGTGTATACACTACTTCGTGAAACAGCAAAGTGGGCAGCGTACAGCACCAAAAAGCGATTTGCCACCGCGAAGATGGACATCGGTGGAGCCTTTCCGACAATCTATTCCCTGACGCAGTGCACACCAGACCTTTCTTCAGAAAGTTGCTTCAAGTGTCTTCAGGGTACTATTCAGGAGTCTCTGAAGTGGTTTGATGGGAGGAGAGGGGGAAGGATTATTGGGGTGCGTTGTTTGATAAGGTTCGAAACAAGCATATTCTACAACGGGGAGCCCATGCGAATTATGGGGCCATCAACGAATTCAACATCTGCAGATGGCAATAGAAGCAAGAGAAAGCTCAGTGGTTTGGCTGTAAGCATAGTGTTTCCCGTGATGGGTGTACTTCTCTTCTGCGTCATCCTTGGCTTCGGATGGATCATCAGAAGGAATAAAATAGGAAAAGCTTCCCTGCAAGAAAAAACTTCTACATACTTGTATGAAGAGGAAGCACTAGCCTGGCCCATACAAGGACAGAGCTCGGAGTTGTTGTTTGACTTTGCATGCATAATACGTGCAACCAATAACTTCTCTCGAGAAAACAAAATTGGTGAAGGTGGCTTTGGTACAATATACAAGGGTAAACTTGACAGATTAGAGATTGCTGTTAAGAGGCTTGATTCACATTCTGGTCAAGGTTTTGTGGAGTTCAGAAATGAAATTCAACTTATAGCCAAACTCCAGCACTCCAATTTAGTTAGACTCCTGGGTTGCTGCAGTAAAGGAGAAGAGAAGATATTGGTGTATGAATATCTACCAAACAAAAAGCCTAGACTTCTTCATATTTGGTATCTAAAGCCTCACTGA
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| Protein seq | MEHKQHYRASVPWVGPNNAESISFVTGTVYTLLRETAKWAAYSTKKRFATAKMDIGGAFPTIYSLTQCTPDLSSESCFKCLQGTIQESLKWFDGRRGGRIIGVRCLIRFETSIFYNGEPMRIMGPSTNSTSADGNRSKRKLSGLAVSIVFPVMGVLLFCVILGFGWIIRRNKIGKASLQEKTSTYLYEEEALAWPIQGQSSELLFDFACIIRATNNFSRENKIGEGGFGTIYKGKLDRLEIAVKRLDSHSGQGFVEFRNEIQLIAKLQHSNLVRLLGCCSKGEEKILVYEYLPNKKPRLLHIWYLKPH |
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| Function | Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q0D5R2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0535400 | Os01t0535400-01 | Chr01 | 19454154 | 19458225 | - | irgsp1_rep | ||
| CDS seq | ATGGAACATAAACAACATTACCGAGCCAGTGTTCCCTGGGTGGGACCCAACAACGCCGAGAGTATTTCCTTTGTCACTGGCACCGTGTATACACTACTTCGTGAAACAGCAAAGTGGGCAGCGTACAGCACCAAAAAGCGATTTGCCACCGCGAAGATGGACATCGGTGGAGCCTTTCCGACAATCTATTCCCTGACGCAGTGCACACCAGACCTTTCTTCAGAAAGTTGCTTCAAGTGTCTTCAGGGTACTATTCAGGAGTCTCTGAAGTGGTTTGATGGGAGGAGAGGGGGAAGGATTATTGGGGTGCGTTGTTTGATAAGGTTCGAAACAAGCATATTCTACAACGGGGAGCCCATGCGAATTATGGGGCCATCAACGAATTCAACATCTGCAGATGGCAATAGAAGCAAGAGAAAGCTCAGTGGTTTGGCTGTAAGCATAGTGTTTCCCGTGATGGGTGTACTTCTCTTCTGCGTCATCCTTGGCTTCGGATGGATCATCAGAAGGAATAAAATAGGAAAAGCTTCCCTGCAAGAAAAAACTTCTACATACTTGTATGAAGAGGAAGCACTAGCCTGGCCCATACAAGGACAGAGCTCGGAGTTGTTGTTTGACTTTGCATGCATAATACGTGCAACCAATAACTTCTCTCGAGAAAACAAAATTGGTGAAGGTGGCTTTGGTACAATATACAAGGGTAAACTTGACAGATTAGAGATTGCTGTTAAGAGGCTTGATTCACATTCTGGTCAAGGTTTTGTGGAGTTCAGAAATGAAATTCAACTTATAGCCAAACTCCAGCACTCCAATTTAGTTAGACTCCTGGGTTGCTGCAGTAAAGGAGAAGAGAAGATATTGGTGTATGAATATCTACCAAACAAAAAGCCTAGACTTCTTCATATTTGGTATCTAAAGCCTCACTGA
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| Protein seq | MEHKQHYRASVPWVGPNNAESISFVTGTVYTLLRETAKWAAYSTKKRFATAKMDIGGAFPTIYSLTQCTPDLSSESCFKCLQGTIQESLKWFDGRRGGRIIGVRCLIRFETSIFYNGEPMRIMGPSTNSTSADGNRSKRKLSGLAVSIVFPVMGVLLFCVILGFGWIIRRNKIGKASLQEKTSTYLYEEEALAWPIQGQSSELLFDFACIIRATNNFSRENKIGEGGFGTIYKGKLDRLEIAVKRLDSHSGQGFVEFRNEIQLIAKLQHSNLVRLLGCCSKGEEKILVYEYLPNKKPRLLHIWYLKPH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0535400 | RBH | 0.209866 | 0.342551 | 1.624012 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g35160 | RBH | 0.138393 | 0.224665 | 0.407656 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0545500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020360 | RBH | 0.156423 | 2.160670 | 2.765735 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0019980 | RBH | 0.090649 | 1.152415 | 2.172706 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020310 | RBH | 0.188777 | 2.730183 | 6.399067 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019690 | RBH | 0.114565 | 0.059752 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019590 | RBH | 4.760364 | 0.000000 | 6.508159 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0330800 | RBH | 2.743349 | 18.74187 | 24.7252635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019640 | RBH | 0.044140 | 0.107338 | 0.614156 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0329700 | RBH | 1.6814975 | 14.2351435 | 6.5351855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019660 | SBH | 0.0 | 0.172190 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019570 | SBH | 0.460221 | 9.503056 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019840 | RBH | 6.767835 | 10.619205 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019590 | RBH | 0.287297 | 0.613827 | 0.377016 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019490 | RBH | 0.096892 | 1.375359 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G020000 | RBH | 0.096820 | 0.000000 | 0.592339 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019710 | RBH | 0.142467 | 5.528184 | 1.714579 |
