Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0001340 | OGI:01002250 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:962073-964090 | ||||||||
| Gene Symbol | RLCK15, OsRLCK15 | ||||||||||
| DNA seq | ccggtcgggactaattcggggcgtgacactgatgcaggtagttgatccctcttgcaatgcccaaagcgatctcattcagcttgtcccaggagaaactcttctctgacgagaagatgtacttgtcaagagagcctcgaggcatgtactcgtatacaagtgccctcctcatttcttcagagcaaaacccgaccagacgcaccacattgacatggtggatccttccaatggttgagacctcactgatgaactcatctccgttgcagctggagctaccagtcagcatcttgacggcaatatggacattacccgggagcagtacacctttatatacagagccatatcctccttggcctagcttgtctcgaaaatgggctgttattgcaatgatgtctgtgtaggcaaaccttgtcggaccaatcatctgctgcattcggaggaacttctctactgcgtcgatcgtgatctttgttttccagtacttatgggtaaggaagatgaataccaccagtgaccccaacactaacctgaataaaacttctcAaacaaaccaacatgcatgtatataagttagaatatatatgttcagacttgcataacatcaaagatgtgatgattaaaagcaaacaatttcgtacgtaccgaaatgaaacttggtgatatcaataaccgatactatggttcccaaaaaaaccatgtcttttctagatgcaccttgacttccgcattctatttcggggtatgtttcgctccagaaaaaagcgcgggttaaatcctgaatgcttgcacgagatgtatgctgcttgaagtacctgcaaatcacaccgatgtacaagacgggctgataagtgaagggaacacgtattttttacatagacagaaccatgagaaacaaaaccgagctagatccaacgatcggaaacgatttactaccgtgaggtaccggtacctcgaggtactattttactggaccggagcaaatctcaaccaaataacttgcatttgagcgcagactcacctctttgaatccttgaggcattcggtggcgctcatacgaacacgctggtaaggatcaaactggtaaggaccaattggaaaccgaacacggaatcctttccttatgaatcctatgatatctgtgtaacttgcattctgtagctgtgaggagttgtccgatatatgccgactctcaaagggaatcatggccaaATatcgacaggaaggttgaagctctccaacggcacagttaacaaacgagacaaaaacaaatgaattgttgggaagtagacatgtaactggcctgtaccaggacatataggccttgtttggatcctccaggctattaaatagccctccggaatcttgctatttaggagtattaaatgtagattactgacaaaaccgattccataacccctaggctattttgcgagacgaatctaatgatgtatattaatccataattagtggctgattactgtagcatcactgtagcaaatcatggattaatatatctcgttagattcgtctcgcaaaatagcctaggggttatggaatgggttttatcagtaatctacgtttaatactcctaaataacaagattccggagggctatttaatagccctccggatccaaacagggccatagtatctgttattgctcgggaacagttcacaaagcatgcccaagtgtctgaagcagtggccaaatcgacaaaactataagaatcggttgatctttcccccaaatacggaggccagtaaatcatgtaaggaaggtgatcagagcgaggaagagggcagctggtgccgtttgtatcatcatcctgcaaggtggcatccacaaccgagaagacctcaccagtataattgatgctagtcacatagtacgttcctgtgttgatatgaatggtggccttgccactgctgcaggagaggttgtaccatggacgaggagtagcgacgcactggcgtgaatcgccttgaagacggaaagggtaggatatgttgcgaagatggcc
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| CDS seq | atgatttactggcctcctcggcatatatcggacaactcctcacagctacagaatgcaagttacacagatatcataggattcataaggaaaggattccgtgttcggtttccaattggtccttaccagtttgatccttaccagcgtgatttaacccgcgcttttttctggagcgaaacataccccgaaatagaatgcggaagtcaaggtgcatctagaaaagacatggtttttttgggaaccatagtatcggttattgatatcaccaagtttcatttcggtacgttagtgttggggtcactggtggtattcatcttccttacccataagtactggaaaacaaagatcacgatcgacgcagtagagaagttcctccgaatgcagcagatgattggtccgacaaggtttgcctacacagacatcattgcaataacagcccattttcgagacaagctaggccaaggaggatatggctctgtatataaaggtgtactgctcccgggtaatgtccatattgccgtcaagatgctgactggtagctccagctgcaacggagatgagttcatcagtgaggtctcaaccattggaaggatccaccatgtcaatgtggtgcgtctggtcgggttttgctctgaagaaatgaggagggcacttgtatacgagtacatgcctcgaggctctcttgacaagtacatcttctcgtcagagaagagtttctcctgggacaagctgaatgagatcgctttgggcattgcaagagggatcaactacctgcatcagtgtcacgccccgaattag
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| Protein seq | MIYWPPRHISDNSSQLQNASYTDIIGFIRKGFRVRFPIGPYQFDPYQRDLTRAFFWSETYPEIECGSQGASRKDMVFLGTIVSVIDITKFHFGTLVLGSLVVFIFLTHKYWKTKITIDAVEKFLRMQQMIGPTRFAYTDIIAITAHFRDKLGQGGYGSVYKGVLLPGNVHIAVKMLTGSSSCNGDEFISEVSTIGRIHHVNVVRLVGFCSEEMRRALVYEYMPRGSLDKYIFSSEKSFSWDKLNEIALGIARGINYLHQCHAPN |
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| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0001340 | OsGoSa_01g0001340.01 | Chr01 | 962073 | 964090 | - | NAM | ||
| CDS seq | atgatttactggcctcctcggcatatatcggacaactcctcacagctacagaatgcaagttacacagatatcataggattcataaggaaaggattccgtgttcggtttccaattggtccttaccagtttgatccttaccagcgtgatttaacccgcgcttttttctggagcgaaacataccccgaaatagaatgcggaagtcaaggtgcatctagaaaagacatggtttttttgggaaccatagtatcggttattgatatcaccaagtttcatttcggtacgttagtgttggggtcactggtggtattcatcttccttacccataagtactggaaaacaaagatcacgatcgacgcagtagagaagttcctccgaatgcagcagatgattggtccgacaaggtttgcctacacagacatcattgcaataacagcccattttcgagacaagctaggccaaggaggatatggctctgtatataaaggtgtactgctcccgggtaatgtccatattgccgtcaagatgctgactggtagctccagctgcaacggagatgagttcatcagtgaggtctcaaccattggaaggatccaccatgtcaatgtggtgcgtctggtcgggttttgctctgaagaaatgaggagggcacttgtatacgagtacatgcctcgaggctctcttgacaagtacatcttctcgtcagagaagagtttctcctgggacaagctgaatgagatcgctttgggcattgcaagagggatcaactacctgcatcagtgtcacgccccgaattag
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| Protein seq | MIYWPPRHISDNSSQLQNASYTDIIGFIRKGFRVRFPIGPYQFDPYQRDLTRAFFWSETYPEIECGSQGASRKDMVFLGTIVSVIDITKFHFGTLVLGSLVVFIFLTHKYWKTKITIDAVEKFLRMQQMIGPTRFAYTDIIAITAHFRDKLGQGGYGSVYKGVLLPGNVHIAVKMLTGSSSCNGDEFISEVSTIGRIHHVNVVRLVGFCSEEMRRALVYEYMPRGSLDKYIFSSEKSFSWDKLNEIALGIARGINYLHQCHAPN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0117600 | SBH | 0.535478 | 0.602221 | 2.783528 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02800 | SBH | 0.000000 | 0.166070 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0117600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001280 | SBH | 0.000000 | 0.000000 | 0.436553 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001220 | RBH | 0.065391 | 0.326275 | 0.549212 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001340 | SBH | 1.780381 | 0.944686 | 7.214406 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001170 | SBH | 0.015936 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001210 | SBH | 0.172035 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0013100 | SBH | 4.8139025 | 5.8982375 | 6.5225565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001270 | SBH | 0.0 | 0.0 | 0.358496 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015200 | SBH | 1.617323 | 0.890693 | 1.779883 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001160 | SBH | 0.000000 | 0.060760 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001400 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001130 | RBH | 0.287462 | 2.850632 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001360 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001280 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001240 | SBH | 0.900158 | 1.196784 | 0.692669 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001140 | SBH | 3.493958 | 2.049984 | 1.707907 |
