Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0010990 | OGI:12035600 | 14/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:13742060-13743937 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaatttcgagccacacccaccttaccctgcaaagtcctttgatacggcgacatcacataagcaaacagtaccgtgacaaccagaccatctgcaaaacccagcaaaaacggcagcccgaagatctcgccgaccgtgtcataactccaccagccgtttgccccggttccaacccggccgagcgcgtcgccgtcgcagtactcgccgtggagacccgggttgccggcgaagctggagcaggggaaggtggagaactggctgacgttcgggatcacgccgcggagacggttgtacgagacgtcgaagcaggacaggaaggtgagccccgtcagcgacgccggtatctcgccggcgagctcgttgtgcgacaggtccagcgcctgcagcgacgccagcgacgccagcctcgccggtatcggcccggacagcgcgttgcagctcaggttgaggatgttgagctgcctcatgtcgccgatctccggcgggatcgcgccggcgaggccgttctggcttaggtccagcgacggcgggatgttcgcgtcgtaccagagctcgccgcggtcgacgtgccagttgtacaaccgcacgccgtagtcggacagccgaagcttctgctggctcgccttcatgtcgtcgccggcggcgagtgacttcaggcgggtcagagcaagcggtatgtcgccggtgagcgcgttgccggagaggtctatccggtacagcgcgtcgaagccaccgagccacgggggcacggtgccggttaaccggttccacgacaggtccagtacggtcagatgggcactaacccgcagccatggcggcacggcgccccggagcgcgcagctggcgatgccgagaagctgaagccgtgggaaccctcggactcctccggtgtccccgccgtcgccacccgcaggcatctcctcgccgtggaagttcattgtcaggatgaggacggagagggcgcggcaatcttggagcacctggagcgcttgcgcgatgccggtgatgctgttgttaccgacgttgaagaaggccatggactgcagccgccggaacgccgaggggaccggcccggagaggaagttccggcgaaggttcaccaccctgagatggcggcagtgcgagaggctcgccgggatgcggccgcgcagcaggttccagccgaggcggacggcgcggagcctcgggagccgcgtgaagttcaagtcgagggcgccatggagggagttgttctccatgttcaggtgctcgagctccgagcacgacgacagcgtgtgcggcaccgtccgggcgagcaggttggactccgccgagaagttccgcagccgcggaagccgccggaacacgccgtcgcgcagcacgctcaggctgttgaaggagacgtcgaggtgcacgagctccgagtagccgggatccgacgacgccgccgcatctccgagctcgccggtgaagctgttgtggctcaagtccagaacacgcagccgcggcatgcgcaggagcagctccggcgggatgggtccgtggagggagttcaaggacaggttgaggaagctcagcttctccagacgagcgagtgagccgccctgcaggttcaggccgccggcgagccccctgccggcgaggtccaggcggaccacccggagctcggacgccccgaacaggcggcaatgaacccccggccaccggcaacagtcggaagaagagttcacagcgccgccgcagccgcctggccacgccgcgatccccgcgtcgagactgtcggagaagccggagagcgcgctccggtcggcgggagtgcacgtgaacacgccacgagggagctgccatgcgaggaagaagaggaagaagagtggccaaaattgggagttgatagagctcat
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| CDS seq | atgagctctatcaactcccaattttggccactcttcttcctcttcttcctcgcatggcagctccctcgtggcgtgttcacgtgcactcccgccgaccggagcgcgctctccggcttctccgacagtctcgacgcggggatcgcggcgtggccaggcggctgcggcggcgctgtgaactcttcttccgactgttgccggtggccgggggttcattgccgcctgttcggggcgtccgagctccgggtggtccgcctggacctcgccggcagggggctcgccggcggcctgaacctgcagggcggctcactcgctcgtctggagaagctgagcttcctcaacctgtccttgaactccctccacggacccatcccgccggagctgctcctgcgcatgccgcggctgcgtgttctggacttgagccacaacagcttcaccggcgagctcggagatgcggcggcgtcgtcggatcccggctactcggagctcgtgcacctcgacgtctccttcaacagcctgagcgtgctgcgcgacggcgtgttccggcggcttccgcggctgcggaacttctcggcggagtccaacctgctcgcccggacggtgccgcacacgctgtcgtcgtgctcggagctcgagcacctgaacatggagaacaactccctccatggcgccctcgacttgaacttcacgcggctcccgaggctccgcgccgtccgcctcggctggaacctgctgcgcggccgcatcccggcgagcctctcgcactgccgccatctcagggtggtgaaccttcgccggaacttcctctccgggccggtcccctcggcgttccggcggctgcagtccatggccttcttcaacgtcggtaacaacagcatcaccggcatcgcgcaagcgctccaggtgctccaagattgccgcgccctctccgtcctcatcctgacaatgaacttccacggcgaggagatgcctgcgggtggcgacggcggggacaccggaggagtccgagggttcccacggcttcagcttctcggcatcgccagctgcgcgctccggggcgccgtgccgccatggctgcgggttagtgcccatctgaccgtactggacctgtcgtggaaccggttaaccggcaccgtgcccccgtggctcggtggcttcgacgcgctgtaccggatagacctctccggcaacgcgctcaccggcgacataccgcttgctctgacccgcctgaagtcactcgccgccggcgacgacatgaaggcgagccagcagaagcttcggctgtccgactacggcgtgcggttgtacaactggcacgtcgaccgcggcgagctctggtacgacgcgaacatcccgccgtcgctggacctaagccagaacggcctcgccggcgcgatcccgccggagatcggcgacatgaggcagctcaacatcctcaacctgagctgcaacgcgctgtccgggccgataccggcgaggctggcgtcgctggcgtcgctgcaggcgctggacctgtcgcacaacgagctcgccggcgagataccggcgtcgctgacggggctcaccttcctgtcctgcttcgacgtctcgtacaaccgtctccgcggcgtgatcccgaacgtcagccagttctccaccttcccctgctccagcttcgccggcaacccgggtctccacggcgagtactgcgacggcgacgcgctcggccgggttggaaccggggcaaacggctggtggagttatgacacggtcggcgagatcttcgggctgccgtttttgctgggttttgcagatggtctggttgtcacggtactgtttgcttatgtgatgtcgccgtatcaaaggactttgcagggtaaggtgggtgtggctcgaaattaa
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| Protein seq | MSSINSQFWPLFFLFFLAWQLPRGVFTCTPADRSALSGFSDSLDAGIAAWPGGCGGAVNSSSDCCRWPGVHCRLFGASELRVVRLDLAGRGLAGGLNLQGGSLARLEKLSFLNLSLNSLHGPIPPELLLRMPRLRVLDLSHNSFTGELGDAAASSDPGYSELVHLDVSFNSLSVLRDGVFRRLPRLRNFSAESNLLARTVPHTLSSCSELEHLNMENNSLHGALDLNFTRLPRLRAVRLGWNLLRGRIPASLSHCRHLRVVNLRRNFLSGPVPSAFRRLQSMAFFNVGNNSITGIAQALQVLQDCRALSVLILTMNFHGEEMPAGGDGGDTGGVRGFPRLQLLGIASCALRGAVPPWLRVSAHLTVLDLSWNRLTGTVPPWLGGFDALYRIDLSGNALTGDIPLALTRLKSLAAGDDMKASQQKLRLSDYGVRLYNWHVDRGELWYDANIPPSLDLSQNGLAGAIPPEIGDMRQLNILNLSCNALSGPIPARLASLASLQALDLSHNELAGEIPASLTGLTFLSCFDVSYNRLRGVIPNVSQFSTFPCSSFAGNPGLHGEYCDGDALGRVGTGANGWWSYDTVGEIFGLPFLLGFADGLVVTVLFAYVMSPYQRTLQGKVGVARN |
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| Function | Phytosulfokine receptor 1 [UniProtKB/Swiss-Prot:Q8LPB4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0010990 | OsLaMu_12g0010990.01 | Chr12 | 13742060 | 13743937 | - | NAM | ||
| CDS seq | atgagctctatcaactcccaattttggccactcttcttcctcttcttcctcgcatggcagctccctcgtggcgtgttcacgtgcactcccgccgaccggagcgcgctctccggcttctccgacagtctcgacgcggggatcgcggcgtggccaggcggctgcggcggcgctgtgaactcttcttccgactgttgccggtggccgggggttcattgccgcctgttcggggcgtccgagctccgggtggtccgcctggacctcgccggcagggggctcgccggcggcctgaacctgcagggcggctcactcgctcgtctggagaagctgagcttcctcaacctgtccttgaactccctccacggacccatcccgccggagctgctcctgcgcatgccgcggctgcgtgttctggacttgagccacaacagcttcaccggcgagctcggagatgcggcggcgtcgtcggatcccggctactcggagctcgtgcacctcgacgtctccttcaacagcctgagcgtgctgcgcgacggcgtgttccggcggcttccgcggctgcggaacttctcggcggagtccaacctgctcgcccggacggtgccgcacacgctgtcgtcgtgctcggagctcgagcacctgaacatggagaacaactccctccatggcgccctcgacttgaacttcacgcggctcccgaggctccgcgccgtccgcctcggctggaacctgctgcgcggccgcatcccggcgagcctctcgcactgccgccatctcagggtggtgaaccttcgccggaacttcctctccgggccggtcccctcggcgttccggcggctgcagtccatggccttcttcaacgtcggtaacaacagcatcaccggcatcgcgcaagcgctccaggtgctccaagattgccgcgccctctccgtcctcatcctgacaatgaacttccacggcgaggagatgcctgcgggtggcgacggcggggacaccggaggagtccgagggttcccacggcttcagcttctcggcatcgccagctgcgcgctccggggcgccgtgccgccatggctgcgggttagtgcccatctgaccgtactggacctgtcgtggaaccggttaaccggcaccgtgcccccgtggctcggtggcttcgacgcgctgtaccggatagacctctccggcaacgcgctcaccggcgacataccgcttgctctgacccgcctgaagtcactcgccgccggcgacgacatgaaggcgagccagcagaagcttcggctgtccgactacggcgtgcggttgtacaactggcacgtcgaccgcggcgagctctggtacgacgcgaacatcccgccgtcgctggacctaagccagaacggcctcgccggcgcgatcccgccggagatcggcgacatgaggcagctcaacatcctcaacctgagctgcaacgcgctgtccgggccgataccggcgaggctggcgtcgctggcgtcgctgcaggcgctggacctgtcgcacaacgagctcgccggcgagataccggcgtcgctgacggggctcaccttcctgtcctgcttcgacgtctcgtacaaccgtctccgcggcgtgatcccgaacgtcagccagttctccaccttcccctgctccagcttcgccggcaacccgggtctccacggcgagtactgcgacggcgacgcgctcggccgggttggaaccggggcaaacggctggtggagttatgacacggtcggcgagatcttcgggctgccgtttttgctgggttttgcagatggtctggttgtcacggtactgtttgcttatgtgatgtcgccgtatcaaaggactttgcagggtaaggtgggtgtggctcgaaattaa
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| Protein seq | MSSINSQFWPLFFLFFLAWQLPRGVFTCTPADRSALSGFSDSLDAGIAAWPGGCGGAVNSSSDCCRWPGVHCRLFGASELRVVRLDLAGRGLAGGLNLQGGSLARLEKLSFLNLSLNSLHGPIPPELLLRMPRLRVLDLSHNSFTGELGDAAASSDPGYSELVHLDVSFNSLSVLRDGVFRRLPRLRNFSAESNLLARTVPHTLSSCSELEHLNMENNSLHGALDLNFTRLPRLRAVRLGWNLLRGRIPASLSHCRHLRVVNLRRNFLSGPVPSAFRRLQSMAFFNVGNNSITGIAQALQVLQDCRALSVLILTMNFHGEEMPAGGDGGDTGGVRGFPRLQLLGIASCALRGAVPPWLRVSAHLTVLDLSWNRLTGTVPPWLGGFDALYRIDLSGNALTGDIPLALTRLKSLAAGDDMKASQQKLRLSDYGVRLYNWHVDRGELWYDANIPPSLDLSQNGLAGAIPPEIGDMRQLNILNLSCNALSGPIPARLASLASLQALDLSHNELAGEIPASLTGLTFLSCFDVSYNRLRGVIPNVSQFSTFPCSSFAGNPGLHGEYCDGDALGRVGTGANGWWSYDTVGEIFGLPFLLGFADGLVVTVLFAYVMSPYQRTLQGKVGVARN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.188396 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0155400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0155400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0010900 | RBH | 0.209686 | 0.0 | 0.562939 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0011110 | RBH | 0.0 | 0.0 | 1.251674 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0011050 | RBH | 1.015076 | 1.187144 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0010850 | RBH | 0.025399 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016530 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0181500 | RBH | 2.357844 | 0.58992 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013740 | SBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0203500 | RBH | 3.063546 | 0.9361895 | 0.037199 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0010630 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0011010 | RBH | 0.058589 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0010880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0010820 | RBH | 0.109522 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G010760 | RBH | 0.247689 | 0.0 | 0.188947 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0010550 | RBH | 0.369044 | 0.0 | 2.405475 |
