Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0155400 | OGI:12007480 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:2732249-2732695 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGGTAATCGATCAGTTTGTGTTCTCCTTGCCCATGTAGCGACAAGGACATATACTTTGTCGTACAGCTTGTCTGGTAGTTGAAAGAAAGCAATTCTCCATCTTCGCTTGAACAACAGAACACCAAATGCCATCCAGGTACCAGTTATGAAGCCACACCCAAGTCCAAGATAAAAGAAATCTATCCCATGACCTTCTTTTGTTCCTCCCTGGTGACGACCTTGCTTTGATGCATTATCCCTCGAGCAATTGTTTTGGAGAGGATGCCCACAAAGTCCAATGTTGCCAATGTACATAAATGGATTTGCTGCATACAAGCTATTAAGCTGTGTTCCCGATGGAATTCCTCCCGTAAGATTGTTGTACGACAAGTCCAAGTAACTTAAGAACGTTAGATTTGACAGAGTGGCTGGTATTTCCCCTGAGATCTTGTTTAACCAAGCTCG
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| CDS seq | CGAGCTTGGTTAAACAAGATCTCAGGGGAAATACCAGCCACTCTGTCAAATCTAACGTTCTTAAGTTACTTGGACTTGTCGTACAACAATCTTACGGGAGGAATTCCATCGGGAACACAGCTTAATAGCTTGTATGCAGCAAATCCATTTATGTACATTGGCAACATTGGACTTTGTGGGCATCCTCTCCAAAACAATTGCTCGAGGGATAATGCATCAAAGCAAGGTCGTCACCAGGGAGGAACAAAAGAAGGTCATGGGATAGATTTCTTTTATCTTGGACTTGGGTGTGGCTTCATAACTGGTACCTGGATGGCATTTGGTGTTCTGTTGTTCAAGCGAAGATGGAGAATTGCTTTCTTTCAACTACCAGACAAGCTGTACGACAAAGTATATGTCCTTGTCGCTACATGGGCAAGGAGAACACAAACTGATCGATTACCATGA
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| Protein seq | RAWLNKISGEIPATLSNLTFLSYLDLSYNNLTGGIPSGTQLNSLYAANPFMYIGNIGLCGHPLQNNCSRDNASKQGRHQGGTKEGHGIDFFYLGLGCGFITGTWMAFGVLLFKRRWRIAFFQLPDKLYDKVYVLVATWARRTQTDRLP |
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| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0155400 | OsNip_12t0155400-00 | Chr12 | 2732249 | 2732695 | - | RAP2018-11-26 | ||
| CDS seq | CGAGCTTGGTTAAACAAGATCTCAGGGGAAATACCAGCCACTCTGTCAAATCTAACGTTCTTAAGTTACTTGGACTTGTCGTACAACAATCTTACGGGAGGAATTCCATCGGGAACACAGCTTAATAGCTTGTATGCAGCAAATCCATTTATGTACATTGGCAACATTGGACTTTGTGGGCATCCTCTCCAAAACAATTGCTCGAGGGATAATGCATCAAAGCAAGGTCGTCACCAGGGAGGAACAAAAGAAGGTCATGGGATAGATTTCTTTTATCTTGGACTTGGGTGTGGCTTCATAACTGGTACCTGGATGGCATTTGGTGTTCTGTTGTTCAAGCGAAGATGGAGAATTGCTTTCTTTCAACTACCAGACAAGCTGTACGACAAAGTATATGTCCTTGTCGCTACATGGGCAAGGAGAACACAAACTGATCGATTACCATGA
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| Protein seq | RAWLNKISGEIPATLSNLTFLSYLDLSYNNLTGGIPSGTQLNSLYAANPFMYIGNIGLCGHPLQNNCSRDNASKQGRHQGGTKEGHGIDFFYLGLGCGFITGTWMAFGVLLFKRRWRIAFFQLPDKLYDKVYVLVATWARRTQTDRLP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0155400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009080 | SBH | 0.040042 | 0.0 | 0.342352 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009260 | SBH | 0.069266 | 0.0 | 0.437422 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007140 | SBH | 0.270052 | 0.0 | 1.592091 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009030 | SBH | 0.007369 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006970 | SBH | 0.802722 | 1.696579 | 2.660084 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0090900 | SBH | 0.008493 | 0.0515135 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008880 | SBH | 0.084877 | 0.0 | 0.060119 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0052500 | RBH | 0 | 0 | 0.074213 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008830 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009070 | SBH | 0.356456 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009020 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009000 | SBH | 0.052254 | 0.0 | 0.123669 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009140 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003790 | RBH | 0.0 | 0.0 | 0.161586 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008790 | SBH | 0.649347 | 0.0 | 0.000000 |
