Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0010120 | OGI:04046690 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:11820012-11821223 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaacgacgagatttagtatcctttcttgcactttcataactcgtgaaatgccgagttggtacgaattcccccaatttgcgacctatcataagatttgttatgtaaataggtatatgttcctttccattatgaatcgcgattgtatggccaaccattgcgggtagaatgctagatgcccgggaccatgttactattgtttctttctcctccttcatattgaccttttctatttttgccaataaatgatgagctacaaaagaattctttttttttcgtgtcacagctgattagtccttttttttccattttaaagagtggcattcgatgtccaatatctcgatcgaagtatggaggtaagaataaatagaataatgatgaatggaaaaaagagaaaatcctttagctggataaggggcggatgtagccaagtggatcaaggcagtggattgtgaatccaccatgcgcgggtttaattcccgtcgttcgcccatcccattattgcaaattccaaaaatgcaattttccatattcctagttacgtatttacttacaacgacgaagaataaaactatcactatattttttccttttcctagttcttcttccaagcgcaggataaccccaaggggTtgtgggtttttttctaccaatgggggctttcccttcaccacccccatgggggtggtccacagggttcataactacccctcttactatggggcgtttacctagccaacacttagacccggctctacccaaacttttttggttcaccccaacattacccacttGtccgactgttgctaagcagttttgggataccaaacggacctccccagatggtaatcttaaagtggccgatttaccttcttttgcaatcagtttcgctacagcacctgctgctctagctaattgcccaccccttccacGtgtgattTctatgttatgtatggccGtgcctaagggcatatcggttgaagtagattcttcttttctctcaaaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctagatgtatatgacgatctctagacagatggatcttatatgaatcgtatgatgaagtaccacatgagtggatatataggaaaggaatccaaatCtgccGaatcgCtcatgttatgatcttctacatcctaggtctccgcgttccgtcatctggcttatgtt
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| CDS seq | atgctttggaagaagcttgtacagtttgggaaggggttttttgagagaaaagaagaatctacttcaaccgatatgcccttaggcaCggccatacataacatagAaatcacaCgtggaaggggtgggcaattagctagagcagcaggtgctgtagcgaaactgattgcaaaagaaggtaaatcggccactttaagattaccatctggggaggtccgtttggtatcccaaaactgcttagcaacagtcggaCaagtgggtaatgttggggtgaaccaaaaaagtttgggtagagccgggtctaagtgttggctaggtaaacgccccatagtaagaggggtagttatgaaccctgtggaccacccccatgggggtggtgaagggaaagcccccattggtagaaaaaaacccacaAccccttgggaaaaggtcaatatgaaggaggagaaagaaacaatagtaacatggtcccgggcatctagcattctacccgcaatggttggccatacaatcgcgattcataatggaaaggaacatatacctatttacataacaaatcttatgataggtcgcaaattgggggaattcgtaccaactcggcatttcacgagttatgaaagtgcaagaaaggatactaaatctcgtcgttaa
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| Protein seq | MLWKKLVQFGKGFFERKEESTSTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWEKVNMKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHIPIYITNLMIGRKLGEFVPTRHFTSYESARKDTKSRR |
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| Function | 50S ribosomal protein L2, chloroplastic [UniProtKB/Swiss-Prot:P0C497] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0010120 | OsLaMu_12g0010120.01 | Chr12 | 11820012 | 11821053 | - | NAM | ||
| CDS seq | atgctttggaagaagcttgtacagtttgggaaggggttttttgagagaaaagaagaatctacttcaaccgatatgcccttaggcaCggccatacataacatagAaatcacaCgtggaaggggtgggcaattagctagagcagcaggtgctgtagcgaaactgattgcaaaagaaggtaaatcggccactttaagattaccatctggggaggtccgtttggtatcccaaaactgcttagcaacagtcggaCaagtgggtaatgttggggtgaaccaaaaaagtttgggtagagccgggtctaagtgttggctaggtaaacgccccatagtaagaggggtagttatgaaccctgtggaccacccccatgggggtggtgaagggaaagcccccattggtagaaaaaaacccacaAccccttgggaaaaggtcaatatgaaggaggagaaagaaacaatagtaacatggtcccgggcatctagcattctacccgcaatggttggccatacaatcgcgattcataatggaaaggaacatatacctatttacataacaaatcttatgataggtcgcaaattgggggaattcgtaccaactcggcatttcacgagttatgaaagtgcaagaaaggatactaaatctcgtcgttaa
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| Protein seq | MLWKKLVQFGKGFFERKEESTSTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWEKVNMKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHIPIYITNLMIGRKLGEFVPTRHFTSYESARKDTKSRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0010120 | OsLaMu_12g0010120.02 | Chr12 | 11820604 | 11821223 | - | IsoSeq | ||
| CDS seq | atgaGcgattCggcaGatttggattcctttcctatatatccactcatgtggtacttcatcatacgattc |
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| Protein seq | MSDSADLDSFPIYPLMWYFIIRF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 23.049459 | 75.665398 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0567700 | SBH | 34.086613 | 32.902996 | 82.699295 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21352 | RBH | 10.418576 | 10.197258 | 3.498114 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0567700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0010100 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0010320 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0010250 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009990 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009880 | RBH | 62.139111 | 39.137611 | 142.720490 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0205500 | SBH | 135.059227 | 53.312681 | 38.6140655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000020 | RBH | 6.790823 | 3.042582 | 6.692106 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0185600 | SBH | 153.5352555 | 39.036564 | 39.08638 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017220 | SBH | 2.844851 | 4.899008 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017490 | SBH | 4.740944 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019930 | SBH | 21.886841 | 0.0 | 21.140705 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007420 | SBH | 31.952805 | 54.269058 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009850 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017020 | SBH | 15.372343 | 243.747192 | 86.880737 |
