Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_09g0007420 | OGI:09035370 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr09:12489632-12492146 | ||||||||
| Gene Symbol | RPL2, rpl2, rpl8, RPL8, OsRPL2, OsRPL8 | ||||||||||
| DNA seq | aagtatcgacgtaatttcatagagtcattcgatctgaatgCtacatgaagaacataagccagatgacggaacgcggagacctaggatgtagaaGatcataacatgagcgattcggcagatttggattcctttcctatatatccactcatgtggtacttcatcatAcgattcatataagatccatctgtctagagatcgtcatatacatctagaaagccgtatgctttggaagaagcttgtacagtttgggaagGggttttttgagagaaaagaagaatctacttcaaccgatatgcccttaggcacggccatacataacatagaaatcacacgtggaaggggtggGCaattagctagagcagcaggtgttgtagcgaaactgattgcaaaagaaggtaaatcggccactttaagattaccatttggggaggtccgtttggtatcccaaaactgcttagcaacagttggacaagtgggtaatgttgaggtgaaccagaaaagtttgggtagagccgggtctaagtgttggctaggtaaacgccccgtagtaagaggggtagttatgaaccctgtggaccaccCccatgggggcggtgaagggaaagcccccattggtagAaaaaaacccacaaccccttggggttatcctgcgcttggaagaagaactaggaaaaggaaaaaatatagtgatagttttattcttcgtcgccgtaagtaaatacgtaactaggaatatggaaaattgcatttttggaatttgcaataatgggatgggcgaacgacgggaattgaacccgcgcatggtggattcacaatccactgccttgatccacttggctacatccgccccttatccagctaaaggattttctcttttttccattcatcattattctatttattctgacctccatacttcgatcGagatattggacatcgaatgccactctttaaaatggaaaaaaaggagtaatcagctgtgacacgaaaaaaaaCgaatccttttgtagctcatcatttattggcaaaaatagaaaaggtcaatatgaaggaggagaaagaaacaatagtaacgtggtcccgggcatctagcattctacccgcaatggttggccatacaatcgcgattcataatggaaaggaacatataccTatttacataacaaatcctatggtaggtcgcaaattgggggaattcgtaccaactcggcatttcacgagttatgaaagtgcaagaaaggatactaaatctcgtcgttaactgaattcagaatagaaagattcaaaatAAAaaaaaaaaagaaataggtaagcggggaataaccttatttatGacaagtttcaaactggtaaagtatacccctaggataaagaagaagaagagtgggctaaggaaactcgcaagaaaagtaccaaccgatcGtctacttaagttcgaacgggttttcaaagcacaaaaacgcatccacatgtccgttttcaaagtacaaagagttctggatgagattcgttggcgttactacgaagaaactgttatgatattgaacctcatgccttatcgagcatcttatcccatcttaaagttggtttattcggCagcagcaaatgctactcattatagggatttcgacaaagcaaatttattcatcactaaagccgaagtcagtagtactattatgaataaattcagacctcgggctcgaggacgtagttctcccataaaaaaaaccatgtgtcatataacaattgtactaaatatagtaaagaaatcgaaataatctttagatccatctaagatttgattcccggtAaaaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggtacaacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagggctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaatggactcaggctcaagttccgaagtaattacacatagaaattcaaaaagaaatcgatacaatccatgtcataatacatattggattccccaatttattaaagaaaaaaggagcaatcgaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattgggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccaaaaggcaatgaaaaaagccattgaattaactaaaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcgcgggaaaagaaattgcgcgtgccgaatgcatcaaaaaagatagacttcccctccaaacaattcacgctaaaattgattattgctgctatccaattcgaactatctatggagtattag
More
|
||||||||||
| CDS seq | atgctttggaagaagcttgtacagtttgggaagGggttttttgagagaaaagaagaatctacttcaaccgatatgcccttaggcacggccatacataacatagaaatcacacgtggaaggggtggGCaattagctagagcagcaggtgttgtagcgaaactgattgcaaaagaaggtaaatcggccactttaagattaccatttggggaggtccgtttggtatcccaaaactgcttagcaacagttggacaagtgggtaatgttgaggtgaaccagaaaagtttgggtagagccgggtctaagtgttggctaggtaaacgccccgtagtaagaggggtagttatgaaccctgtggaccaccCccatgggggcggtgaagggaaagcccccattggtagAaaaaaacccacaaccccttggggttatcctgcgcttggaagaagaactaggaaaaggaaaaaatatagtgatagttttattcttcgtcgccaaaaggtcaatatgaaggaggagaaagaaacaatagtaacgtggtcccgggcatctagcattctacccgcaatggttggccatacaatcgcgattcataatggaaaggaacatataccTatttacataacaaatcctatgtatacccctaggataaagaagaagaagagtgggctaaggaaactcgcaagaaaagtaccaaccgatcGtctacttaagttcgaacgggttttcaaagcacaaaaacgcatccacatgtccgttttcaaagtacaaagagttctggatgagattcgttggcgttactacgaagaaactgttatgatattgaacctcatgccttatcgagcatcttatcccatcttaaagttggtttattcggCagcagcaaatgctactcattatagggatttcgacaaagcaaatttattcatcactaaagccgaagaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagggctcgaatagaaaaatagaagcagactcaagtttcgaaaaaaaaggagcaatcgaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattgggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccaaaaggcaatgaaaaaagccattgaattaactaaaaaaacagatataaagggagtaaaagccgtctcgcgggaaaagaaattgcgcgtgccgaatgcatcaaaaaagatagacttcccctccaaacaattcacgctaaaattgattattgctgctatccaattcgaactatctatggagtattag
More
|
||||||||||
| Protein seq | MLWKKLVQFGKGFFERKEESTSTDMPLGTAIHNIEITRGRGGQLARAAGVVAKLIAKEGKSATLRLPFGEVRLVSQNCLATVGQVGNVEVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRQKVNMKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHIPIYITNPMYTPRIKKKKSGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFQKAMKKAIELTKKTDIKGVKAVSREKKLRVPNASKKIDFPSKQFTLKLIIAAIQFELSMEY |
||||||||||
| Function | 50S ribosomal protein L2, chloroplastic [UniProtKB/Swiss-Prot:P0C497] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0007420 | OsLaMu_09g0007420.01 | Chr09 | 12489852 | 12492146 | + | NAM | ||
| CDS seq | atgctttggaagaagcttgtacagtttgggaagGggttttttgagagaaaagaagaatctacttcaaccgatatgcccttaggcacggccatacataacatagaaatcacacgtggaaggggtggGCaattagctagagcagcaggtgttgtagcgaaactgattgcaaaagaaggtaaatcggccactttaagattaccatttggggaggtccgtttggtatcccaaaactgcttagcaacagttggacaagtgggtaatgttgaggtgaaccagaaaagtttgggtagagccgggtctaagtgttggctaggtaaacgccccgtagtaagaggggtagttatgaaccctgtggaccaccCccatgggggcggtgaagggaaagcccccattggtagAaaaaaacccacaaccccttggggttatcctgcgcttggaagaagaactaggaaaaggaaaaaatatagtgatagttttattcttcgtcgccaaaaggtcaatatgaaggaggagaaagaaacaatagtaacgtggtcccgggcatctagcattctacccgcaatggttggccatacaatcgcgattcataatggaaaggaacatataccTatttacataacaaatcctatgtatacccctaggataaagaagaagaagagtgggctaaggaaactcgcaagaaaagtaccaaccgatcGtctacttaagttcgaacgggttttcaaagcacaaaaacgcatccacatgtccgttttcaaagtacaaagagttctggatgagattcgttggcgttactacgaagaaactgttatgatattgaacctcatgccttatcgagcatcttatcccatcttaaagttggtttattcggCagcagcaaatgctactcattatagggatttcgacaaagcaaatttattcatcactaaagccgaagaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagggctcgaatagaaaaatagaagcagactcaagtttcgaaaaaaaaggagcaatcgaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattgggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccaaaaggcaatgaaaaaagccattgaattaactaaaaaaacagatataaagggagtaaaagccgtctcgcgggaaaagaaattgcgcgtgccgaatgcatcaaaaaagatagacttcccctccaaacaattcacgctaaaattgattattgctgctatccaattcgaactatctatggagtattag
More
|
|||||||
| Protein seq | MLWKKLVQFGKGFFERKEESTSTDMPLGTAIHNIEITRGRGGQLARAAGVVAKLIAKEGKSATLRLPFGEVRLVSQNCLATVGQVGNVEVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRQKVNMKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHIPIYITNPMYTPRIKKKKSGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFQKAMKKAIELTKKTDIKGVKAVSREKKLRVPNASKKIDFPSKQFTLKLIIAAIQFELSMEY
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0007420 | OsLaMu_09g0007420.02 | Chr09 | 12489632 | 12490915 | + | IsoSeq | ||
| CDS seq | atgagcgattcggcagatttggattcctttcctatatatccactcatgtggtacttcatcatAcgattc |
|||||||
| Protein seq | MSDSADLDSFPIYPLMWYFIIRF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 31.952805 | 54.269058 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g024339N | SBH | 15.584910 | 4.954243 | 18.439848 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19952 | RBH | 0.769474 | 0.587535 | 0.303894 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007520 | RBH | 0.700120 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007510 | RBH | 3.449591 | 3.352130 | 16.305773 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007730 | RBH | 0.000000 | 0.000000 | 1.431063 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007570 | RBH | 13.785064 | 3.672359 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007700 | RBH | 111.490135 | 52.005047 | 227.197906 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0205500 | RBH | 135.059227 | 53.312681 | 38.6140655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007670 | RBH | 1.383284 | 0.434528 | 2.450686 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0185600 | RBH | 153.5352555 | 39.036564 | 39.08638 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007620 | RBH | 43.842529 | 3.352342 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007420 | RBH | 45.526207 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007350 | RBH | 276.074738 | 184.596802 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007350 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007890 | RBH | 66.094704 | 80.796219 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007960 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007770 | RBH | 34.733047 | 57.594742 | 113.715134 |
