Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g024339N | OGI:04046690 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:9137342-9139765 | ||||||||
| Gene Symbol | RPL2, rpl2, rpl8, RPL8, OsRPL2, OsRPL8 | ||||||||||
| DNA seq | GAATCTTTCTATTCTGAATTCAGTTAACGACGAGATTTAGTATCCTTTCTTGCACTTTCATAACTCGTGAAATGCCGAGTTGGTACGAATTCCCCCAATTTGCGACCTACCATAGGATTTGTTATGTAAATAGGTATATGTTCCTTTCCATTATGAATCGCGATTGTATGGCCAACCATTGCGGGTAGAATGCTAGATGCCCGGGACCACGTTACTATTGTTTCTTTCTCCTCCTTCATATTGACCTTTTCTATTTTTGCCAATAAATGATGAGCTACAAAAGGATTCGTTTTTTTTCGTGTCACAGCTGATTACTCCTTTTTTTCCATTTTAAAGAGTGGCATTCGATGTCCAATATCTCGATCGAAGTATGGAGGTCAGAATAAATAGAATAATGATGAATGGAAAAAAGAGAAAATCCTTTAGCTGGATAAGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGCGCGGGTTCAATTCCCGTCGTTCGCCCATCCCATTATTGCAAATTCCAAAAATGCAATTTTCCATATTCCTAGTTACGTATTTACTTACGGCGACGAAGAATAAAACTATCACTATATTTTTTCCTTTTCCTAGTTCTTCTTCCAAGCGCAGGATAACCCCAAGGGGTTGTGGGTTTTTTTCTACCAATGGGGGCTTTCCCTTCACCGCCCCCATGGGGGTGGTCCACAGGGTTCATAACTACCCCTCTTACTACGGGGCGTTTACCTAGCCAACACTTAGACCCGGCTCTACCCAAACTTTTTTGGTTCACCCCAACATTACCCACTTGTCCGACTGTTGCTAAGCAGTTTTGGGATACCAAACGGACCTCCCCAGATGGTAATCTTAAAGTGGCCGATTTACCTTCTTTTGCAATCAGTTTCGCTACAGCACCTGCTGCTCTAGCTAATTGCCCACCCCTTCCACGTGTGATTTCTATGTTATGTATGGCCGTGCCTAAGGGCATATCGGTTGAAGTAGATTCTTCTTTTCTCTCAAAAAACCCCTTCCCAAACTGTACAAGCTTCTTCCAAAGCATACGGCTTTCTAGATGTATATGACGATCTCTAGACAGATGGATCTTATATGAATCGTATGATGAAGTACCACATGAGTGGATATATAGGAAAGGAATCCAAATCTGCCGAATCGCTCATGTTATGATCTTCTACATCCTAGGTCTCCGCGTTCCGTCATCTGGCTTATGTTCTTCATGTAGCATTCAGATCGAATGACTCTATGAAATTACGTCGATACTTCTACATATTATGGGTAACGTAGGAGACATCCCTATTTTCCCCCGGGGGTCTTAATTACCACTGCTTAGCTTTCAATTCGCCTCTGACCATCAAATTAAATGTGAATAACCCGTCCTCCTCTCTTTGAAACAAGGGGCGCTTCCGGTTCTGTGCGTGCTTCAAACAATTTTGTCTTCTCCATATTACCATATCTCTAGAGTCAATAATTTTCTATGAGGAACTACTGAACTCAATCACTTGCTGCCGTTACTCAACAGTTTTCTGTTGAGGTCTATCCCGTAGAGGTAGTCAAATTGGATCAGTGATCGATTTCTAGGTTTCGTCGTAAACCTAATTGGTTACTTCCAATTACGTAAATCAATAGTTCAAACCGCACTCAAAGGTAGGGCATTTCCCATTGATATAGGAACTTTTGTACCAGAAACAATAGTATCTCCAATTATAGCCCCTCTGGGATGTAAAATATATCCCTTCTCACCATCCCCATAGTGTATGAGACAAATGTACGCATTTCGATTAGGGTCGTATTCTATGGTTACGATTCTACCAGATATGTCTTTTTGATTCCGTCGAAAATCGATTTTACGGTATAGGCGCTTATGACCTCCCCCTCTATGCCTTGCGGTAATGATTCCTCTGGAATTACGACCTTTACCACAACGGTGCCGTCCATGGATCAAATTATTTCGTGGATTGGATTTCACTTGCCTATCTATGGTTCCCTTGCGTGTGCTCGGGATAGGTGTTTTGTATAAATGTTTCGCCGTATTATTAAGTATTCTCCTTTAGTTTTTTTCTCTATCTAGAAGTGGAATAGAATAACCCGGTTGAAGGGTAATGATCATACGTCTGTAATGCATTGTATGTCCTAGAATAGGGCCCATTCTTCTACCCTTTCCGGGTAGTCGATGGCTATTCACAGCTACTACCTTAACACCAAAGAAGAGTTCGACCCAATGCTTTATTTCTGTCTTAGTGAATCCCGATTCGACATTAAAAGTATATTGATTCTTTCCCAATAAACGAAGACTTTTTTCTGTAAATACTGCGTATTTGATTCCATCCATAAATCGACTTTCCCTCCTATGCTCTGAGTTCCAGTATCGATAAGAATTCGAGTTCTTATTGTTCTTATGTTAT
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| CDS seq | ATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTTTGAGAGAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCCGTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCCGGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCCCCATGGGGGCGGTGAAGGGAAAGCCCCCATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGGAAAAGGAAAAAATATAGTGATAGTTTTATTCTTCGTCGCCGT
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| Protein seq | MLWKKLVQFGKGFFERKEESTSTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR |
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| Function | 50S ribosomal protein L2, chloroplastic [UniProtKB/Swiss-Prot:P0C497] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g024339N | OsNip_04t024339N-01 | Chr04 | 9137342 | 9139763 | - | IsoSeq | ||
| CDS seq | ATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCCGTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCCGGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCCCCATGGGGGCGGTGAAGGGAAAGCCCCCATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGGAAAAGGAAAAAATATAGTGATAGTTTTATTCTTCGTCGCCGT
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| Protein seq | MGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g024339N | OsNip_04t024339N-02 | Chr04 | 9137342 | 9139763 | - | IsoSeq | ||
| CDS seq | ATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTTTGAGAGAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCCGTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCCGGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCCCCATGGGGGCGGTGAAGGGAAAGCCCCCATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGGAAAAGGAAAAAATATAGTGATAGTTTTATTCTTCGTCGCCGT
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| Protein seq | MLWKKLVQFGKGFFERKEESTSTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g024339N | OsNip_04t024339N-03 | Chr04 | 9137639 | 9139764 | - | IsoSeq | ||
| CDS seq | ATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCCGTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCCGGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCCCCATGGGGGCGGTGAAGGGAAAGCCCCCATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGGAAAAGGAAAAAATATAGTGATAGTTTTATTCTTCGTCGCCGT
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| Protein seq | MGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g024339N | OsNip_04t024339N-04 | Chr04 | 9137639 | 9139763 | - | IsoSeq | ||
| CDS seq | ATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTTTGAGAGAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCCGTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCCGGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCCCCATGGGGGCGGTGAAGGGAAAGCCCCCATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGGAAAAGGAAAAAATATAGTGATAGTTTTATTCTTCGTCGCCGT
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| Protein seq | MLWKKLVQFGKGFFERKEESTSTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g024339N | OsNip_04t024339N-05 | Chr04 | 9137956 | 9139763 | - | IsoSeq | ||
| CDS seq | CATAAGAACAATAAGAACTCGAATTCTTATCGATACTGGAACTCAGAGCATAGGAGGGAAAGTCGATTTATGGATGGAATCAAATACGCAGTATTTACAGAAAAAAGTCTTCGTTTATTGGGAAAGAATCAATATACTTTTAATGTCGAATCGGGATTCACTAAGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTTAAGGTAGTAGCTGTGAATAGCCATCGACTACCCGGAAAGGGTAGAAGAATGGGCCCTATTCTAGGACATACAATGCATTACAGACGTATGATCATTACCCTTCAACCGGGTTATTCTATTCCACTTCTAGATAGAGAAAAA
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| Protein seq | HKNNKNSNSYRYWNSEHRRESRFMDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDREK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g024339N | OsNip_04t024339N-06 | Chr04 | 9137956 | 9139765 | - | IsoSeq | ||
| CDS seq | ATGGATGGAATCAAATACGCAGTATTTACAGAAAAAAGTCTTCGTTTATTGGGAAAGAATCAATATACTTTTAATGTCGAATCGGGATTCACTAAGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTTAAGGTAGTAGCTGTGAATAGCCATCGACTACCCGGAAAGGGTAGAAGAATGGGCCCTATTCTAGGACATACAATGCATTACAGACGTATGATCATTACCCTTCAACCGGGTTATTCTATTCCACTTCTAGATAGAGAAAAA
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| Protein seq | MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDREK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g024339N | OsNip_04t024339N-07 | Chr04 | 9139422 | 9139765 | - | IsoSeq | ||
| CDS seq | ATA |
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| Protein seq | I |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 9137342 | 9139763 | - | OsNip_04t024339N-02 | OsNip_04t024339N-02,OsNip_04t024339N-01 | All |
| RI | Chr04 | 9137342 | 9139763 | - | OsNip_04t024339N-02 | OsNip_04t024339N-02,OsNip_04t024339N-01 | IsoSeq |
| RI | Chr04 | 9137342 | 9139763 | - | OsNip_04t024339N-02 | OsNip_04t024339N-01,OsNip_04t024339N-02 | Leaf |
| RI | Chr04 | 9137342 | 9139763 | - | OsNip_04t024339N-02 | OsNip_04t024339N-01,OsNip_04t024339N-02 | Panicle |
| RI | Chr04 | 9137342 | 9139763 | - | OsNip_04t024339N-02 | OsNip_04t024339N-01,OsNip_04t024339N-02 | Root |
Expression
| Leaf | Root | Panicle | |
| FPKM | 15.584910 | 4.954243 | 18.439848 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g040994A | RBH | 51.417309 | 47.710396 | 55.964115 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0018300 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0018190 | RBH | 47.104424 | 63.288174 | 193.551239 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017270 | RBH | 3.018337 | 0.000000 | 2.556259 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007570 | SBH | 13.785064 | 3.672359 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007760 | RBH | 612.337646 | 250.229736 | 1495.301270 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0205500 | SBH | 135.059227 | 53.312681 | 38.6140655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007490 | RBH | 73.217873 | 14.557233 | 76.289688 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0185600 | SBH | 153.5352555 | 39.036564 | 39.08638 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007620 | SBH | 43.842529 | 3.352342 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007420 | SBH | 45.526207 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016460 | RBH | 225.833755 | 174.531265 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019870 | RBH | 23.210346 | 0.0 | 25.288851 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007890 | RBH | 66.094704 | 80.796219 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026030 | RBH | 70.093826 | 54.293499 | 151.918900 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004680 | RBH | 274.266327 | 655.621033 | 981.887878 |
