Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g040994A | OGI:09035370 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:14505304-14510624 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACATAAGAACAATAAGAACTCGAATTCTTATCGATACTGGAACTCAGAGCATAGGAGGGAAAGTCGATTTATGGATGGAATCAAATACGCAGTATTTACAGAAAAAAGTCTTCGTTTATTGGGAAAGAATCAATATACTTTTAATGTCGAATCGGGATTCACTAAGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTTAAGGTAGTAGCTGTGAATAGCCATCGACTACCCGGAAAGGGTAGAAGAATGGGCCCTATTCTAGGACATACAATGCATTACAGACGTATGATCATTACCCTTCAACCGGGTTATTCTATTCCACTTCTAGATAGAGAAAAAAACTAAAGGAGAATACTTAATAATACGGCGAAACATTTATACAAAACACCTATCCCGAGCACACGCAAGGGAACCATAGATAGGCAAGTGAAATCCAATCCACGAAATAATTTGATCCATGGACGGCACCGTTGTGGTAAAGGTCGTAATTCCAGAGGAATCATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGCCTATACCGTAAAATCGATTTTCGACGGAATCAAAAAGACATATCTGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCGTACATTTGTCTCATACACTATGGGGATGGTGAGAAGGGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACTATTGTTTCTGGTACAAAAGTTCCTATATCAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAATCGATCACTGATCCAATTTGACTACCTCTACGGGATAGACCTCAACAGAAAACTGTTGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATAGAAAATTATTGACTCTAGAGATATGGTAATATGGAGAAGACAAAATTGTTTGAAGCACGCACAGAACCGGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGGGTTATTCACATTTAATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGTGGTAATTAAGACCCCCGGGGGAAAATAGGGATGTCTCCTACGTTACCCATAATATGTAGAAGTATCGACGTAATTTCATAGAGTCATTCGATCTGAATGCTACATGAAGAACATAAGCCAGATGACGGAACGCGGAGACCTAGGATGTAGAAGATCATAACATGAGCGATTCGGCAGATTTGGATTCCTTTCCTATATATCCACTCATGTGGTACTTCATCATACGATTCATATAAGATCCATCTGTCTAGAGATCGTCATATACATCTAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTTTGAGAGAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCCGTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCCGGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCCCCATGGGGGCGGTGAAGGGAAAGCCCCCATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGGAAAAGGAAAAAATATAGTGATAGTTTTATTCTTCGTCGCCGTAAGTAAATACGTAACTAGGAATATGGAAAATTGCATTTTTGGAATTTGCAATAATGGGATGGGCGAACGACGGGAATTGAACCCGCGCATGGTGGATTCACAATCCACTGCCTTGATCCACTTGGCTACATCCGCCCCTTATCCAGCTAAAGGATTTTCTCTTTTTTCCATTCATCATTATTCTATTTATTCTGACCTCCATACTTCGATCGAGATATTGGACATCGAATGCCACTCTTTAAAATGGAAAAAAAGGAGTAATCAGCTGTGACACGAAAAAAAACGAATCCTTTTGTAGCTCATCATTTATTGGCAAAAATAGAAAAGGTCAATATGAAGGAGGAGAAAGAAACAATAGTAACGTGGTCCCGGGCATCTAGCATTCTACCCGCAATGGTTGGCCATACAATCGCGATTCATAATGGAAAGGAACATATACCTATTTACATAACAAATCCTATGGTAGGTCGCAAATTGGGGGAATTCGTACCAACTCGGCATTTCACGAGTTATGAAAGTGCAAGAAAGGATACTAAATCTCGTCGTTAACTGAATTCAGAATAGAAAGATTCAAAATAAAAAAAAAAGAAATAGGTAAGCGGGGAATAACCTTATTTATGACAAGTTTCAAACTGGTAAAGTATACCCCTAGGATAAAGAAGAAGAAGAGTGGGCTAAGGAAACTCGCAAGAAAAGTACCAACTGATCGTCTACTTAAGTTCGAACGGGTTTTCAAAGCACAAAAACGCATCCACATGTCCGTTTTCAAAGTACAAAGAGTTCTGGATGAGATTCGTTGGCGTTACTACGAAGAAACTGTTATGATATTGAACCTCATGCCTTATCGAGCATCTTATCCCATCTTAAAGTTGGTTTATTCGGCAGCAGCAAATGCTACTCATTATAGGGATTTCGACAAAGCAAATTTATTCATCACTAAAGCCGAAGTCAGTAGGAGTACTATTATGAATAAATTCAGACCTCGGGCTCGAGGACGTAGTTCTCCCATAAAAAAAACCATGTGTCATATAACAATTGTACTAAATATAGTAAAGAAATCGAAATAATCTTTAGATCCATCTAAGATTTGATTCCCGGTAAAAAAATAGAATAGAAAAATATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAATCACCATTCCTTTTGGTTCGCACAACCAAAAAATTATTCTGAAGGTCTACAGGAAGATAAAAAAATACGGAATTGTATCAAGAACTATATACAAAAGAATAGGAAAAAGGGCTCGAATAGAAAAATAGAAGCAGACTCAAGTTTCGAAGTAATTACACATAATAAAAAAATGGACTCAGGCTCAAGTTCCGAAGTAATTACACATATAGAAATTCAAAAAGAAATCGATACAATCCACGTCATAATCCATATTGGATTCCCCAATTTATTAAAGAAAAAAGGAGCAATCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAATTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGTGAAAGAACCTTATAGACAACCTAACATTCTTGCAGAATATATAGCTTTCCAATTAAAAAATAGAGTTTCATTCCGAAAGGCAATGAAAAAAGCCATTGAATTAACTAAAAAAACAGATATAAAGGGAGTAAAAGTAAAAATTGCAGGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAATGCATCAAAAAAGGTAGACTTCCCCTCCAAACAATTCGCGCTAAAATTGATTATTGCTGCTATCCAATTCGAACTATCTATGGAGTATTAGGAGTTAAAATTTGGATATTCGTAGACGAAGAATAACCAACCCTGTCTTCCCATTCTGTTCAGTAAGAGAATAAAAAATGACAAGAGCCTTATTTTCCCTAAAATCCCTGAAAAAAAGAAGAAATTCTACCTCTTTCTATAAGATTTAATGAAAATTGAGAAATCTTTTAATAAAATTGCTATGCTTAGTGTGTGACTCGTTAGTTTTTTTTTAGGGTTCAAAAAGGGGATTAAAAAAAAATAGAATGAACCCTACTATGTAATTATAGAAAATGAACTAATAACCAACCTATTGCTTCGTATTGTCGAGATCCTAACTAAGAAACAGTCACTATATGAATAAATACATCTATCATAAATGAGTAAATCTATCATATACGTGTAGCAACTGCAATTTTTTCTTTAAAAAAAAATAGGATTCTAAGTTGTGAAGCAAAACTAAAGGGGATGTAGATAAAAGGAAGGATGATAGAAAGAAGGAAGAGAAATAAGAAAGATATAGGATTCCAATATGTATGGTCTATGAATTACATCATAAAAAGCAATGTGATAAAGCATCAATATAATAAAAATAACAGAGAATTCGAAATCGTAATTTGATTGAAACAAGAAATACAAATTTCAAGGAATAACAAAGAGCGTCCCGAGTTAATAAAACTGAGAAATTGACTCGGAAAGAAATTTTTTGGAAGCTCCATTGCGAGATTCAAACCTAACCATTAAAGGAGAAGCAGTGGGAACGACAGAACCTATGACTGGATAGGATTTTCTTGAAAAGAATCCCAATACTTCATTGGGTGGGATGGCGGAACAAACCAAAAAAATTGTCTTATTTGATAAGGTTATGAATTAACAAATAAGACAGGAAAGAGTAAATATTCGCCCGCGAAATTTTTATTGAATTAGAATACTTTACCGCGATTCAATAAGAGTAAAATAAAAAAAGGAGATTAAAAAAAAAAAGAATTACATTAAATATAGAATATAGATAAATAAACATACACATCTAGATATATTCTAGATCCTCTTTCTTGACTATATATTTTAGTATTTTAATAAATTCAATATTAAAAACCCTAACCTTTCCTATTAATGTGTATCTATCCGTAATATTTTAGAATATTGTGGAATTAGAGAAATTTGCACACTTTCTCATTTGATTCGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTTTGCAGTAGAGATGGAACTAAGAGAGAACCATCGACTATAACCCCAAAAGAACCAGATTTCGTAAACAACATAGAGGAAGAATGAAGGGAAAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCGAGGCAGATAGAAGCAGGATGAAGAGCAATGACACGATATGCACGTCGTGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACCGGTTACAATAAGACCGACCGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAACCAGGTCGAATACTTTATGAAATGGGCGGAGTATCCGAAACTGTAGCTAGAGCAGCTATTTCCATAGCTGCCAGCAAAATGCCCATACGAAGTCAATTTCTTCGGTTAGAAATATAACCCCCCAAAAAAAGTAGTATTG
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| CDS seq | ATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCCGTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCCGGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCCCCATGGGGGCGGTGAAGGGAAAGCCCCCATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGGAAAAGGAAAAAATATAGTGATAGTTTTATTCTTCGTCGCCGT
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| Protein seq | MGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR |
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| Function | 50S ribosomal protein L2, chloroplastic [UniProtKB/Swiss-Prot:P0C497] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g040994A | OsNip_09t040994A-01 | Chr09 | 14505304 | 14507806 | + | IsoSeq | ||
| CDS seq | ATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCCGTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCCGGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCCCCATGGGGGCGGTGAAGGGAAAGCCCCCATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGGAAAAGGAAAAAATATAGTGATAGTTTTATTCTTCGTCGCCGT
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| Protein seq | MGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g040994A | OsNip_09t040994A-02 | Chr09 | 14507722 | 14509890 | + | IsoSeq | ||
| CDS seq | ATGATAGAAAGAAGGAAGAGAAATAAGAAAGATATAGGATTCCAATATGTATGGTCTATGAATTACATCATAAAAAGCAATGTGATAAAGCATCAATATAATAAAAATAACAGAGAATTCGAAATCGTA |
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| Protein seq | MIERRKRNKKDIGFQYVWSMNYIIKSNVIKHQYNKNNREFEIV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g040994A | OsNip_09t040994A-03 | Chr09 | 14509085 | 14510624 | + | IsoSeq | ||
| CDS seq | ATGATAGAAAGAAGGAAGAGAAATAAGAAAGATATAGGATTCCAATATGTATGGTCTATGAATTACATCATAAAAAGCAATGTGATAAAGCATCAATATAATAAAAATAACAGAGAATTCGAAATCGTA |
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| Protein seq | MIERRKRNKKDIGFQYVWSMNYIIKSNVIKHQYNKNNREFEIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 51.417309 | 47.710396 | 55.964115 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g024339N | RBH | 15.584910 | 4.954243 | 18.439848 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026710 | SBH | 0.000000 | 7.491859 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0018190 | SBH | 47.104424 | 63.288174 | 193.551239 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007730 | RBH | 0.000000 | 0.000000 | 1.431063 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007570 | RBH | 13.785064 | 3.672359 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007760 | SBH | 612.337646 | 250.229736 | 1495.301270 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0205500 | RBH | 135.059227 | 53.312681 | 38.6140655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007490 | SBH | 73.217873 | 14.557233 | 76.289688 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0185600 | RBH | 153.5352555 | 39.036564 | 39.08638 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007620 | RBH | 43.842529 | 3.352342 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007420 | RBH | 45.526207 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019870 | SBH | 23.210346 | 0.0 | 25.288851 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007890 | SBH | 66.094704 | 80.796219 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026030 | SBH | 70.093826 | 54.293499 | 151.918900 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004680 | SBH | 274.266327 | 655.621033 | 981.887878 |
