Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g21352 | OGI:04046690 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:10887700-10888137 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTTATTTTGAATCTTTCTATTCTGAATTCAGTTAACGACGAGATTTAGTATCCTTTCTTGCACTTTCATAACTCGTGAAATGCCGAGTTGGTACGAATTCCCCCAATTTGCGACCTACCATAGGATTTGTTATGTAAATAGGTATATGTTCCTTTCCATTATGAATCGCGATTGTATGGCCAACCATTGCGGGTAGAATGCTAGATGCCCGGGACCACGTTACTATTGTTTCTTTCTCCTCCTTCATATTGACCTTTTCTATTTTTGCCAATAAATGATGAGCTACAAAAGGATTCGTTTTTTTTCGTGTCACAGCTGATTACTCCTTTTTTTCCATTTTAAAGAGTGGCATTCGATGTCCAACATCTCGATCGAAGTATGGAGGTCAGAATAAATAGAATAATGATGAATGGAAAAAAAAGAAAATCCTTTAGCTG
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| CDS seq | ATGAAGGAGGAGAAAGAAACAATAGTAACGTGGTCCCGGGCATCTAGCATTCTACCCGCAATGGTTGGCCATACAATCGCGATTCATAATGGAAAGGAACATATACCTATTTACATAACAAATCCTATGGTAGGTCGCAAATTGGGGGAATTCGTACCAACTCGGCATTTCACGAGTTATGAAAGTGCAAGAAAGGATACTAAATCTCGTCGTTAA |
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| Protein seq | MKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSYESARKDTKSRR |
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| Function | 30S ribosomal protein S19, chloroplastic [UniProtKB/Swiss-Prot:P12153] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g21352 | LOC_Os10g21352.1 | Chr10 | 10887700 | 10888137 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGGAGGAGAAAGAAACAATAGTAACGTGGTCCCGGGCATCTAGCATTCTACCCGCAATGGTTGGCCATACAATCGCGATTCATAATGGAAAGGAACATATACCTATTTACATAACAAATCCTATGGTAGGTCGCAAATTGGGGGAATTCGTACCAACTCGGCATTTCACGAGTTATGAAAGTGCAAGAAAGGATACTAAATCTCGTCGTTAA
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| Protein seq | MKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSYESARKDTKSRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.418576 | 10.197258 | 3.498114 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16818 | SBH | 71.853554 | 68.698357 | 29.125250 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0010100 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000020 | RBH | 8.153231 | 0.000000 | 24.368517 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007690 | RBH | 3.875213 | 0.000000 | 16.922422 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009990 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000020 | RBH | 669.642761 | 131.320526 | 669.102783 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000020 | RBH | 6.790823 | 3.042582 | 6.692106 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227700 | SBH | 915.368317 | 189.7466205 | 188.2668915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019730 | RBH | 34.765022 | 0.0 | 31.180399 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0010120 | RBH | 23.049459 | 75.665398 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016260 | SBH | 2.283695 | 3.454943 | 0.972557 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004680 | SBH | 274.266327 | 655.621033 | 981.887878 |
