Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g16818 | OGI:04046690 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:9153929-9154210 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGACACGAAAAAAAACGAATCCTTTTGTAGCTCATCATTTATTGGCAAAAATAGAAAAGGTCAATATGAAGGAGGAGAAAGAAACAATAGTAACGTGGTCCCGGGCATCTAGCATTCTACCCGCAATGGTTGGCCATACAATCGCGATTCATAATGGAAAGGAACATATACCTATTTACATAACAAATCCTATGGTAGGTCGCAAATTGGGGGAATTCGTACCAACTCGGCATTTCACGAGTTATGAAAGTGCAAGAAAGGATACTAAATCTCGTCGTTAA |
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| CDS seq | ATGAAGGAGGAGAAAGAAACAATAGTAACGTGGTCCCGGGCATCTAGCATTCTACCCGCAATGGTTGGCCATACAATCGCGATTCATAATGGAAAGGAACATATACCTATTTACATAACAAATCCTATGGTAGGTCGCAAATTGGGGGAATTCGTACCAACTCGGCATTTCACGAGTTATGAAAGTGCAAGAAAGGATACTAAATCTCGTCGTTAA |
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| Protein seq | MKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSYESARKDTKSRR |
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| Function | 30S ribosomal protein S19, chloroplastic [UniProtKB/Swiss-Prot:P12153] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g16818 | LOC_Os04g16818.1 | Chr04 | 9153929 | 9154210 | + | MSU_osa1r7 | ||
| CDS seq | ATGAAGGAGGAGAAAGAAACAATAGTAACGTGGTCCCGGGCATCTAGCATTCTACCCGCAATGGTTGGCCATACAATCGCGATTCATAATGGAAAGGAACATATACCTATTTACATAACAAATCCTATGGTAGGTCGCAAATTGGGGGAATTCGTACCAACTCGGCATTTCACGAGTTATGAAAGTGCAAGAAAGGATACTAAATCTCGTCGTTAA
More
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| Protein seq | MKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSYESARKDTKSRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 71.853554 | 68.698357 | 29.125250 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g25024 | SBH | 65.382919 | 60.390209 | 25.502087 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013730 | RBH | 0.988578 | 0.000000 | 2.449757 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017540 | RBH | 8.719533 | 6.461831 | 22.215942 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013640 | SBH | 0.000000 | 0.000000 | 2.238807 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016990 | SBH | 18.086636 | 1.661869 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000020 | SBH | 669.642761 | 131.320526 | 669.102783 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0227200 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007490 | SBH | 73.217873 | 14.557233 | 76.289688 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227700 | SBH | 915.368317 | 189.7466205 | 188.2668915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007620 | SBH | 43.842529 | 3.352342 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019730 | SBH | 34.765022 | 0.0 | 31.180399 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0010120 | SBH | 23.049459 | 75.665398 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016260 | SBH | 2.283695 | 3.454943 | 0.972557 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004680 | RBH | 274.266327 | 655.621033 | 981.887878 |
