Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0008420 | OGI:12023180 | 4/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:8887487-8893421 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtcaaccctaagccaccagcaccaccatcttctcgtcctccaactcatcctacttgtgcccttgctccacctcgtcgtccccggaacgccagccgccgccggcaagttctccgacgtgttggcgagcggccgcaacgtgagcgacggcgacgtgctcgtctcccccggcgggtccttcaccctcggcttcttctcccccgcgggcgccgccaccaggaggaggtatctcgggatttggttctccgtctcgccggacgccgccgtccactgggtggccaaccgtgaccacgctctcaacgacacctccggcgcactgacgctgaccgacgccggcgtcctcctcctcctcgacggctctggcaaggtggtgtggtcctcctccgccaccgcgccgccttccgcgactacctccgccgcggcgcggctgctcgattccggcaacttggtggtgcacgggcagggctccggcaccgccctgtggcagtcgttcgactaccccaccaacaccctgctgcccggcatgaagatcggcaagaaccggtggaccggcgccgagtggtacctgctgtcgtggcgctcccccgccgatccttctccggggagctacaggtacgtcaccgacggcgacgaggcgctgccggagaacgtcgtgctcgacggcaatggcaccgaggtgtaccggaccggggtgtggaacggcaggaggttcaacggcgtcccggagatggcgtcgtttgcggacatgttcaccttccagctcacggtcagcccgggggaggtcacctactgctacgtcgccaaggccggggcgccgttctcccgcgtggtggtgaccgacgatggcgtggtccggcggctggtgtgggacgccgcgacgcgggcgtggaagacgttcttccaggctccgggggactcctgcgacagctacgccaagtgcggcgcgttcggcctgtgcgacagcagcgccggcgcgacgtcgatttgccggtgcgtgaagaggttcagcccggcgtcgccggcggagtggtcgatgagggagtactccggcgggtgccgccgggacgtggcgctcgactgcggcacgggggacgggttcgccgtgctgcgcggggtgaagctccctgacacgcgcaacgcgtcggtggacatgggcgtcaagctggacgagtgcagggcgaggtgcgttgccaactgctcgtgtgtggcgtatgctgcggcggacatgagcggcggtggcagcggcagtgggtgtattatgtggacaaagcctttcgtcgatttacgtttcatcgacaatggccaggacatctatcagcggctggcgaaatctgaattaaaaggtaacctacatgaatctgtactctttactactagctctatgctgcgttgcatcgctgttctttctttttctttttctttttccccctgctcttatgaattgataggtataacattatcagaagaaaaaaaatatttgaagggcaattaaactaatacgtcttgcgccgttcgtgtttggttgggctgtggcttttgaaaaatcagctgtgggctgtgactttttAaaaagtagctttggaaaagtagctatgaggaagccaaaagctcgtttggttacacacatgtgacttttggaaaagcttccccctgacgagtgggccccacatgtcatgtacacatcttcctcttcctcacagacgcacgattcctcggctcgtcgtcggcctcatccgtctcgctcacctcgacgatccttgtcggtcgagcagcgccaccgccacgttcacgatgccctgcggccggagcaaccgcggtcgccggagttgcagcgcccctgccagactgtgcgtaacgccccaattttcggtcgggattaaaaatcatttaataatgcatttttttgaaattaaataaaagttaaagcaatttaatcaagtgaattattgagggaattaaaaattttctttaaaaatcattggccgagaatattttgtaatattctttgtgccctgaaatactctctgaaatttcccgcgaattttcggagctcaagaagtaattttaacatcacaaagtgcatttaatcaattagaatAaaaagaaaagcaaataaaacctctccttcctctctttgggcccctttcggcccaatccctcctttctctcccgcggcccgcgcgccccctttctctccctctcgggctggcctcctccctcggcccgctcggctctctctctccctcaagtccgttccgcctccccagccggcctgtccctccctctctctccgacaggtgggacccgtggaccccacctgtcatccccttcctccagctccaactaccgccatggccgcccgagccgccccacgtcgccgctctccccacgcgcctccctctcccgagctcacatccaacgacgtgggcacgatcccctcctcgtcctccaccatttcccccactcgtcccacaaaaaccagcgccggccgagtcgccaccaccccacgtcggcgccccacttccccgccggttgccgcccctctcggccccgattctgccgctccgaccctataaaaacgaaccccggaacatcctctctcttttcccctcctcacccgagccagccgcgctctctctctccctccccacgccgctcccgcgcaccgccgctttccggcgagctccggccgcccgccaccgctgctccacccaccgccgcgccaatccgccaccaccgtcggcttcgcggcgccgtgccgcagcccggcctctactccatttcccctctccgcctctggaacaccgccgcctcgtgcaccacctctcttccccgccgctgccgccttcaactggccgctgctgccgcgttagtcgtcgccgcacctcgccgtttgcgtcgtcggcaacgccgtgccaagctctaccccggcctccgctccgtttccccattccatcgccggagcaccacaaccaccaccacacccgagccgcctccacttccacagagccccacccactcctcaccggtgagggggacctcgcccggccgtgctgttgcctctgccgcgttcgcagtgcccgcccacgccttgtccgctgctcggtcgtcgtcttccgccgctccaacctatcctctaagttcgccggtgagctctacctcttgtcgtcgccatcggccttcatttccagtcaccccgcatcggtcctccccttcctaactccctcttctccttccgcaggtcaagggcaaccccgtccgccctccgtcctcgcaagccgccatcaggcaatcgtcgtcgccgccatcttcctccgcgccagccgccgcttccggtgaggacctctcctccctcccCTtttttttttcccgtccccctttcttgccggccgctgcctcatggggtgagtcgccgtccccgtgcgcgccgctgtcctccggctgcccgccgccgttccgcgtcgccggctgctgccgccggtggccgcatgccgctgccgcgccttggctcggccgggccggctttgtgccgcgcctgtgcccctggctgccgctCccctcggccgcccgattggctcgggccgatctgggccgtccacgtggtggacgcgcacccgaggccacgtgtggtcttggtccaccgtgcgccgcccctttgtgccgctgacgtgcggggcccgcctgtcggcgccagttccccttgctgacgtcagcaaatgccttttcatttgagaaattaatcaattaatgcgcaataaattcgttaataattctagaaattctcttaatggctcaaaacttctaaaattcatatctaattcattcaaactccgaattgagccattcaacttgcaaaattcatctaaaattgagctctacatgtttgttTACtttttatgtactgtttccttggtttttattagagtttttcctcgttttgcgtgccagcgtgtagaatccgtcatttcggaagtccgcggttgtgaggaaaagagttcggaagatcaaagtgaagaagcaaggcaagtcacacatttcccttgagcatgttgatcccaattttataaatgttttaccgtttgcaaataaacatgcatgtcttgctaattacatggatccgggtattacctatttgctttcttgtgccatgtttacttgttatctgtcctttgtcagcattgggtaataaatcgactagctcatgttacttatgtgacctagctagaactgtatgcttagccatgcttaatttccactagctcagttgatgggataattgcagtattagacctcctagtatcatgacatgacgagctgcgtgctcgagacatccgaccatgtgtcatggtcgtaattatccaactaaaatgcgactgaatggtgggctgtggtgcatggttttgctagtcgcacccatagcaattatggaccggttcgcgggatgccctggaagaacttatcgtacttaccacaagccagcgtgggcaacggctgggcttgtagtgtagctttcctctagccgacgcatccaggcaagggtgggcgtgatggagtttggatgggccctgcgacggcctatacggcttccggattcacctaggcacgagaggggactgctcgctgccttgcgaggagtgggggtgaaacctgaggtgtggtgtgcttggttagagggggttatgcgaagggtcctgtcacggcctctttccggtatgtcgtggtggcatgccggcgcacggaaacgtgtcgtggagctgtgtcttgtgggtacagttgtacacctctgatcagagtaaaactattcgaatagccgtgcccgcggttatgggcggtcgaccagattcatcgtgattagtcccaccttaataaatcgactcaatgcactgtagttcaggtgggttggttaggcttgttcaacgtggtgtagcgttgatcagtggagatttaatgttactttaattactcaacagttttactgttttgctcaataaaatgttttacaaccgcctttatgcaaatagccacaaaccgtccttgtgttccccttgcacgtctgcatcgttggtgtggcttgctgagtacggtggttgtactcagccttgctattattcccccttttcagaagtgtagtgcttctgagttgaagacgaagttagaagaccaaggctcagaccccagttgagttttgcctgcggagtggagctgaagccccgctaggatcgcctttttccgctgctactgctttcgtttcagtatgaggactaagtgcctcttctgtaagtattttacgctttatttacatttggaactgtatattacttgtcgttttgtgtaccctggctggtcctggacagggatttaatacacaaaatagtctggaaatttgggctaaatttctgggcatgacacttgtcgttttgtgtaccctggctggtccctccgtattttaatgtatgacgccgttaactttttaacaaacgtttgacctttcgtcttattcAaaaaatttatgtaattatcatttattttattgtgacttgatttatcatcaaatgttctttaagcatgacataagtatttttgtatttgcataaaaaatttgaataagacgaatagtcaaatgttagttaaaaagtcaacggcgtcatacattaaaatacggagggagtactatttaTtttttttaacgtcaaatacatatcttgtcatagcgggaatttgaacataagacctcttttccacctacactaacctttatacctacacatcataaggatttggacccaaggcctctccgtcatgtgcactaacatttatcatgtcaccgacacatcaattagccttcttaactgaaatttatatcatggatttgagtatctaacgctacaacatgatccgtcataggtgccggtttcccatctgacgcctttgcctaa
More
|
||||||||||
| CDS seq | atgtcaaccctaagccaccagcaccaccatcttctcgtcctccaactcatcctacttgtgcccttgctccacctcgtcgtccccggaacgccagccgccgccggcaagttctccgacgtgttggcgagcggccgcaacgtgagcgacggcgacgtgctcgtctcccccggcgggtccttcaccctcggcttcttctcccccgcgggcgccgccaccaggaggaggtatctcgggatttggttctccgtctcgccggacgccgccgtccactgggtggccaaccgtgaccacgctctcaacgacacctccggcgcactgacgctgaccgacgccggcgtcctcctcctcctcgacggctctggcaaggtggtgtggtcctcctccgccaccgcgccgccttccgcgactacctccgccgcggcgcggctgctcgattccggcaacttggtggtgcacgggcagggctccggcaccgccctgtggcagtcgttcgactaccccaccaacaccctgctgcccggcatgaagatcggcaagaaccggtggaccggcgccgagtggtacctgctgtcgtggcgctcccccgccgatccttctccggggagctacaggtacgtcaccgacggcgacgaggcgctgccggagaacgtcgtgctcgacggcaatggcaccgaggtgtaccggaccggggtgtggaacggcaggaggttcaacggcgtcccggagatggcgtcgtttgcggacatgttcaccttccagctcacggtcagcccgggggaggtcacctactgctacgtcgccaaggccggggcgccgttctcccgcgtggtggtgaccgacgatggcgtggtccggcggctggtgtgggacgccgcgacgcgggcgtggaagacgttcttccaggctccgggggactcctgcgacagctacgccaagtgcggcgcgttcggcctgtgcgacagcagcgccggcgcgacgtcgatttgccggtgcgtgaagaggttcagcccggcgtcgccggcggagtggtcgatgagggagtactccggcgggtgccgccgggacgtggcgctcgactgcggcacgggggacgggttcgccgtgctgcgcggggtgaagctccctgacacgcgcaacgcgtcggtggacatgggcgtcaagctggacgagtgcagggcgaggtgcgttgccaactgctcgtgtgtggcgtatgctgcggcggacatgagcggcggtggcagcggcagtgggtgtattatgtggacaaagcctttcgtcgatttacgtttcatcgacaatggccaggacatctatcagcggctggcgaaatctgaattaaaaggtgccggtttcccatctgacgcctttgcctaa
More
|
||||||||||
| Protein seq | MSTLSHQHHHLLVLQLILLVPLLHLVVPGTPAAAGKFSDVLASGRNVSDGDVLVSPGGSFTLGFFSPAGAATRRRYLGIWFSVSPDAAVHWVANRDHALNDTSGALTLTDAGVLLLLDGSGKVVWSSSATAPPSATTSAAARLLDSGNLVVHGQGSGTALWQSFDYPTNTLLPGMKIGKNRWTGAEWYLLSWRSPADPSPGSYRYVTDGDEALPENVVLDGNGTEVYRTGVWNGRRFNGVPEMASFADMFTFQLTVSPGEVTYCYVAKAGAPFSRVVVTDDGVVRRLVWDAATRAWKTFFQAPGDSCDSYAKCGAFGLCDSSAGATSICRCVKRFSPASPAEWSMREYSGGCRRDVALDCGTGDGFAVLRGVKLPDTRNASVDMGVKLDECRARCVANCSCVAYAAADMSGGGSGSGCIMWTKPFVDLRFIDNGQDIYQRLAKSELKGAGFPSDAFA |
||||||||||
| Function | Receptor-like serine/threonine-protein kinase SD1-8 [UniProtKB/Swiss-Prot:O81905] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0008420 | OsLaMu_12g0008420.01 | Chr12 | 8887487 | 8893421 | + | NAM | ||
| CDS seq | atgtcaaccctaagccaccagcaccaccatcttctcgtcctccaactcatcctacttgtgcccttgctccacctcgtcgtccccggaacgccagccgccgccggcaagttctccgacgtgttggcgagcggccgcaacgtgagcgacggcgacgtgctcgtctcccccggcgggtccttcaccctcggcttcttctcccccgcgggcgccgccaccaggaggaggtatctcgggatttggttctccgtctcgccggacgccgccgtccactgggtggccaaccgtgaccacgctctcaacgacacctccggcgcactgacgctgaccgacgccggcgtcctcctcctcctcgacggctctggcaaggtggtgtggtcctcctccgccaccgcgccgccttccgcgactacctccgccgcggcgcggctgctcgattccggcaacttggtggtgcacgggcagggctccggcaccgccctgtggcagtcgttcgactaccccaccaacaccctgctgcccggcatgaagatcggcaagaaccggtggaccggcgccgagtggtacctgctgtcgtggcgctcccccgccgatccttctccggggagctacaggtacgtcaccgacggcgacgaggcgctgccggagaacgtcgtgctcgacggcaatggcaccgaggtgtaccggaccggggtgtggaacggcaggaggttcaacggcgtcccggagatggcgtcgtttgcggacatgttcaccttccagctcacggtcagcccgggggaggtcacctactgctacgtcgccaaggccggggcgccgttctcccgcgtggtggtgaccgacgatggcgtggtccggcggctggtgtgggacgccgcgacgcgggcgtggaagacgttcttccaggctccgggggactcctgcgacagctacgccaagtgcggcgcgttcggcctgtgcgacagcagcgccggcgcgacgtcgatttgccggtgcgtgaagaggttcagcccggcgtcgccggcggagtggtcgatgagggagtactccggcgggtgccgccgggacgtggcgctcgactgcggcacgggggacgggttcgccgtgctgcgcggggtgaagctccctgacacgcgcaacgcgtcggtggacatgggcgtcaagctggacgagtgcagggcgaggtgcgttgccaactgctcgtgtgtggcgtatgctgcggcggacatgagcggcggtggcagcggcagtgggtgtattatgtggacaaagcctttcgtcgatttacgtttcatcgacaatggccaggacatctatcagcggctggcgaaatctgaattaaaaggtgccggtttcccatctgacgcctttgcctaa
More
|
|||||||
| Protein seq | MSTLSHQHHHLLVLQLILLVPLLHLVVPGTPAAAGKFSDVLASGRNVSDGDVLVSPGGSFTLGFFSPAGAATRRRYLGIWFSVSPDAAVHWVANRDHALNDTSGALTLTDAGVLLLLDGSGKVVWSSSATAPPSATTSAAARLLDSGNLVVHGQGSGTALWQSFDYPTNTLLPGMKIGKNRWTGAEWYLLSWRSPADPSPGSYRYVTDGDEALPENVVLDGNGTEVYRTGVWNGRRFNGVPEMASFADMFTFQLTVSPGEVTYCYVAKAGAPFSRVVVTDDGVVRRLVWDAATRAWKTFFQAPGDSCDSYAKCGAFGLCDSSAGATSICRCVKRFSPASPAEWSMREYSGGCRRDVALDCGTGDGFAVLRGVKLPDTRNASVDMGVKLDECRARCVANCSCVAYAAADMSGGGSGSGCIMWTKPFVDLRFIDNGQDIYQRLAKSELKGAGFPSDAFA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0257900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g15550 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0257900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008420 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008550 | SBH | 0.0 | 2.281307 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008580 | SBH | 0.0 | 9.139871 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008400 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008230 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0124200 | SBH | 0 | 0.0778465 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008200 | SBH | 0.0 | 0.193612 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0131400 | RBH | 0.0133545 | 0.0832295 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008130 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008440 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008300 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008290 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008470 | RBH | 0.000000 | 0.947466 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008290 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008160 | RBH | 0.0 | 0.0 | 0.0 |
