Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0257900 | OGI:12023260 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:8883123-8884572 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGCTGTGGAAGAAAAGACTAGAGAAGATTGACAAGTGATCATATGAGAGAGATGTCAACCCTAAGCCACCAGCACCACCATGTTCTCGTCCTCCAACTCATCCTACTTCTGCCCTTTCTCCACCTCGTTGTCCCCGGAACGCCAGCCGCCGCCCGCAAGTTCTCCGACGTGTTGGCGAGCGGCCGCAACGTGAGCGACGGCGACGTGCTCGTCTCCCCCGGCGGGTCCTTCACCCTCGGCTTCTTCTCCCCCGCCGCCACCAGGAGGAGGTATCTCGGGATTTGGTTCTCCGTCTCGCCGGACGCCGCCGTCCACTGGGTGGCCAACCGTGACCACGCTCTCAACGACACCTCCGGCGCACTGATGCTGACCGACGCCGGCGTCCTCCTCCTCCTCGACGGCTCCGGCAAGGTGGTGTGGTCCTCTTCCGCCACCGCGCTGCCTTCCGCGACTACCTCCGCCGCGGCGCGGCTGCTCGATTCCGGCAACTTGGTGGTGCAAGGGCAGGGCTCCGGCACCGCCCTGTGGCAGTCGTTCGACTACCCCACCAACACCCTGCTGCCCGGCATGAAGATCGGCAAGAACCGGTGGACCGGCGCCGAGTGGTACCTGCTGTCGTGGCGCTCCCCCGCCGATCCTTCTCCGGGGAGCTACAGGTACGTCACCGACGGCGACGAGGCGCTGCCGGAGAACGTCGTGCTCGACGGCAATGGCACCGAGGTGTACCGGACCGGGGTGTGGAACGGCAGGAGGTTCAACGGCGTCCCGGAGATGGCGTCGTTCGCGGACATGTTCAGCTTCCAGCTCACGGTCAGCCCGGGCGAGGTCACCTACGGCTACGTCGCCAAGGCCGGGGCGCCGTTCTCCCGCGTGGTGGTGACCGACGACGGCGTGGTCCGGCGGCTGGTGTGGGACGCGGCGACGCGGGCGTGGAAGACGTTCTTCCAGGCGCCGGGGGACTCCTGCGACAGCTACGCCAAGTGCGGCGCGTTCGGCCTGTGCGACAGCAACGCCGGCGCGACGTCGATTTGCCGGTGCGTGAAGGGGTTCAGCCCGGCGTCGCCGGCGGAGTGGTCGATGAGGGAGTACTCCGGCGGGTGCCGCCGGGACGTGGCGCTCGACTGCGGCACGGACGGGTTCGCCGTGCTGCGCGGGGTGAAGCTCCCTGACACGCGCAACGCGTCGGTGGACATGGGCGTCAAGCTGGACGAGTGCAGGGCGAGGTGCGTTGCCAACTGCTCGTGCGTGGCGTATGCCGCGGCGGACTTGAGCGGCGGTGGGTGCATTATGTGGACAAAGCCTTTCGTCGATTTACGTTTCATCGACAATGGCCAGGACATCTACCAGCGGCTAGCGAAATCTGAAATAGGTAATTTAACCTAATTTTGATTTGTTGGTGTTCCATAAATGTGGTGGCTTTATATATCCTTAGGGAAATTGAATTTCTTT
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| CDS seq | ATGAGAGAGATGTCAACCCTAAGCCACCAGCACCACCATGTTCTCGTCCTCCAACTCATCCTACTTCTGCCCTTTCTCCACCTCGTTGTCCCCGGAACGCCAGCCGCCGCCCGCAAGTTCTCCGACGTGTTGGCGAGCGGCCGCAACGTGAGCGACGGCGACGTGCTCGTCTCCCCCGGCGGGTCCTTCACCCTCGGCTTCTTCTCCCCCGCCGCCACCAGGAGGAGGTATCTCGGGATTTGGTTCTCCGTCTCGCCGGACGCCGCCGTCCACTGGGTGGCCAACCGTGACCACGCTCTCAACGACACCTCCGGCGCACTGATGCTGACCGACGCCGGCGTCCTCCTCCTCCTCGACGGCTCCGGCAAGGTGGTGTGGTCCTCTTCCGCCACCGCGCTGCCTTCCGCGACTACCTCCGCCGCGGCGCGGCTGCTCGATTCCGGCAACTTGGTGGTGCAAGGGCAGGGCTCCGGCACCGCCCTGTGGCAGTCGTTCGACTACCCCACCAACACCCTGCTGCCCGGCATGAAGATCGGCAAGAACCGGTGGACCGGCGCCGAGTGGTACCTGCTGTCGTGGCGCTCCCCCGCCGATCCTTCTCCGGGGAGCTACAGGTACGTCACCGACGGCGACGAGGCGCTGCCGGAGAACGTCGTGCTCGACGGCAATGGCACCGAGGTGTACCGGACCGGGGTGTGGAACGGCAGGAGGTTCAACGGCGTCCCGGAGATGGCGTCGTTCGCGGACATGTTCAGCTTCCAGCTCACGGTCAGCCCGGGCGAGGTCACCTACGGCTACGTCGCCAAGGCCGGGGCGCCGTTCTCCCGCGTGGTGGTGACCGACGACGGCGTGGTCCGGCGGCTGGTGTGGGACGCGGCGACGCGGGCGTGGAAGACGTTCTTCCAGGCGCCGGGGGACTCCTGCGACAGCTACGCCAAGTGCGGCGCGTTCGGCCTGTGCGACAGCAACGCCGGCGCGACGTCGATTTGCCGGTGCGTGAAGGGGTTCAGCCCGGCGTCGCCGGCGGAGTGGTCGATGAGGGAGTACTCCGGCGGGTGCCGCCGGGACGTGGCGCTCGACTGCGGCACGGACGGGTTCGCCGTGCTGCGCGGGGTGAAGCTCCCTGACACGCGCAACGCGTCGGTGGACATGGGCGTCAAGCTGGACGAGTGCAGGGCGAGGTGCGTTGCCAACTGCTCGTGCGTGGCGTATGCCGCGGCGGACTTGAGCGGCGGTGGGTGCATTATGTGGACAAAGCCTTTCGTCGATTTACGTTTCATCGACAATGGCCAGGACATCTACCAGCGGCTAGCGAAATCTGAAATAGGTAATTTAACCTAA
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| Protein seq | MREMSTLSHQHHHVLVLQLILLLPFLHLVVPGTPAAARKFSDVLASGRNVSDGDVLVSPGGSFTLGFFSPAATRRRYLGIWFSVSPDAAVHWVANRDHALNDTSGALMLTDAGVLLLLDGSGKVVWSSSATALPSATTSAAARLLDSGNLVVQGQGSGTALWQSFDYPTNTLLPGMKIGKNRWTGAEWYLLSWRSPADPSPGSYRYVTDGDEALPENVVLDGNGTEVYRTGVWNGRRFNGVPEMASFADMFSFQLTVSPGEVTYGYVAKAGAPFSRVVVTDDGVVRRLVWDAATRAWKTFFQAPGDSCDSYAKCGAFGLCDSNAGATSICRCVKGFSPASPAEWSMREYSGGCRRDVALDCGTDGFAVLRGVKLPDTRNASVDMGVKLDECRARCVANCSCVAYAAADLSGGGCIMWTKPFVDLRFIDNGQDIYQRLAKSEIGNLT |
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| Function | Receptor-like serine/threonine-protein kinase SD1-8 [UniProtKB/Swiss-Prot:O81905] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0257900 | OsNip_12t0257900-01 | Chr12 | 8883123 | 8884572 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGAGAGATGTCAACCCTAAGCCACCAGCACCACCATGTTCTCGTCCTCCAACTCATCCTACTTCTGCCCTTTCTCCACCTCGTTGTCCCCGGAACGCCAGCCGCCGCCCGCAAGTTCTCCGACGTGTTGGCGAGCGGCCGCAACGTGAGCGACGGCGACGTGCTCGTCTCCCCCGGCGGGTCCTTCACCCTCGGCTTCTTCTCCCCCGCCGCCACCAGGAGGAGGTATCTCGGGATTTGGTTCTCCGTCTCGCCGGACGCCGCCGTCCACTGGGTGGCCAACCGTGACCACGCTCTCAACGACACCTCCGGCGCACTGATGCTGACCGACGCCGGCGTCCTCCTCCTCCTCGACGGCTCCGGCAAGGTGGTGTGGTCCTCTTCCGCCACCGCGCTGCCTTCCGCGACTACCTCCGCCGCGGCGCGGCTGCTCGATTCCGGCAACTTGGTGGTGCAAGGGCAGGGCTCCGGCACCGCCCTGTGGCAGTCGTTCGACTACCCCACCAACACCCTGCTGCCCGGCATGAAGATCGGCAAGAACCGGTGGACCGGCGCCGAGTGGTACCTGCTGTCGTGGCGCTCCCCCGCCGATCCTTCTCCGGGGAGCTACAGGTACGTCACCGACGGCGACGAGGCGCTGCCGGAGAACGTCGTGCTCGACGGCAATGGCACCGAGGTGTACCGGACCGGGGTGTGGAACGGCAGGAGGTTCAACGGCGTCCCGGAGATGGCGTCGTTCGCGGACATGTTCAGCTTCCAGCTCACGGTCAGCCCGGGCGAGGTCACCTACGGCTACGTCGCCAAGGCCGGGGCGCCGTTCTCCCGCGTGGTGGTGACCGACGACGGCGTGGTCCGGCGGCTGGTGTGGGACGCGGCGACGCGGGCGTGGAAGACGTTCTTCCAGGCGCCGGGGGACTCCTGCGACAGCTACGCCAAGTGCGGCGCGTTCGGCCTGTGCGACAGCAACGCCGGCGCGACGTCGATTTGCCGGTGCGTGAAGGGGTTCAGCCCGGCGTCGCCGGCGGAGTGGTCGATGAGGGAGTACTCCGGCGGGTGCCGCCGGGACGTGGCGCTCGACTGCGGCACGGACGGGTTCGCCGTGCTGCGCGGGGTGAAGCTCCCTGACACGCGCAACGCGTCGGTGGACATGGGCGTCAAGCTGGACGAGTGCAGGGCGAGGTGCGTTGCCAACTGCTCGTGCGTGGCGTATGCCGCGGCGGACTTGAGCGGCGGTGGGTGCATTATGTGGACAAAGCCTTTCGTCGATTTACGTTTCATCGACAATGGCCAGGACATCTACCAGCGGCTAGCGAAATCTGAAATAGGTAATTTAACCTAA
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| Protein seq | MREMSTLSHQHHHVLVLQLILLLPFLHLVVPGTPAAARKFSDVLASGRNVSDGDVLVSPGGSFTLGFFSPAATRRRYLGIWFSVSPDAAVHWVANRDHALNDTSGALMLTDAGVLLLLDGSGKVVWSSSATALPSATTSAAARLLDSGNLVVQGQGSGTALWQSFDYPTNTLLPGMKIGKNRWTGAEWYLLSWRSPADPSPGSYRYVTDGDEALPENVVLDGNGTEVYRTGVWNGRRFNGVPEMASFADMFSFQLTVSPGEVTYGYVAKAGAPFSRVVVTDDGVVRRLVWDAATRAWKTFFQAPGDSCDSYAKCGAFGLCDSNAGATSICRCVKGFSPASPAEWSMREYSGGCRRDVALDCGTDGFAVLRGVKLPDTRNASVDMGVKLDECRARCVANCSCVAYAAADLSGGGCIMWTKPFVDLRFIDNGQDIYQRLAKSEIGNLT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0257900 | OsNip_12t0257900-02 | Chr12 | 8883164 | 8884514 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGAGAGATGTCAACCCTAAGCCACCAGCACCACCATGTTCTCGTCCTCCAACTCATCCTACTTCTGCCCTTTCTCCACCTCGTTGTCCCCGGAACGCCAGCCGCCGCCCGCAAGTTCTCCGACGTGTTGGCGAGCGGCCGCAACGTGAGCGACGGCGACGTGCTCGTCTCCCCCGGCGGGTCCTTCACCCTCGGCTTCTTCTCCCCCGCCGCCACCAGGAGGAGGTATCTCGGGATTTGGTTCTCCGTCTCGCCGGACGCCGCCGTCCACTGGGTGGCCAACCGTGACCACGCTCTCAACGACACCTCCGGCGCACTGATGCTGACCGACGCCGGCGTCCTCCTCCTCCTCGACGGCTCCGGCAAGGTGGTGTGGTCCTCTTCCGCCACCGCGCTGCCTTCCGCGACTACCTCCGCCGCGGCGCGGCTGCTCGATTCCGGCAACTTGGTGGTGCAAGGGCAGGGCTCCGGCACCGCCCTGTGGCAGTCGTTCGACTACCCCACCAACACCCTGCTGCCCGGCATGAAGATCGGCAAGAACCGGTGGACCGGCGCCGAGTGGTACCTGCTGTCGTGGCGCTCCCCCGCCGATCCTTCTCCGGGGAGCTACAGGTACGTCACCGACGGCGACGAGGCGCTGCCGGAGAACGTCGTGCTCGACGGCAATGGCACCGAGGTGTACCGGACCGGGGTGTGGAACGGCAGGAGGTTCAACGGCGTCCCGGAGATGGCGTCGTTCGCGGACATGTTCAGCTTCCAGCTCACGGTCAGCCCGGGCGAGGTCACCTACGGCTACGTCGCCAAGGCCGGGGCGCCGTTCTCCCGCGTGGTGGTGACCGACGACGGCGTGGTCCGGCGGCTGGTGTGGGACGCGGCGACGCGGGCGTGGAAGACGTTCTTCCAGGCGCCGGGGGACTCCTGCGACAGCTACGCCAAGTGCGGCGCGTTCGGCCTGTGCGACAGCAACGCCGGCGCGACGTCGATTTGCCGGTGCGTGAAGGGGTTCAGCCCGGCGTCGCCGGCGGAGTGGTCGATGAGGGAGTACTCCGGCGGGTGCCGCCGGGACGTGGCGCTCGACTGCGGCACGGACGGGTTCGCCGTGCTGCGCGGGGTGAAGCTCCCTGACACGCGCAACGCGTCGGTGGACATGGGCGTCAAGCTGGACGAGTGCAGGGCGAGGTGCGTTGCCAACTGCTCGTGCGTGGCGTATGCCGCGGCGGACTTGAGCGGCGGTGGGTGCATTATGTGGACAAAGCCTTTCGTCGATTTACGTTTCATCGACAATGGCCAGGACATCTACCAGCGGCTAGCGAAATCTGAAATAGGTAATTTAACCTAA
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| Protein seq | MREMSTLSHQHHHVLVLQLILLLPFLHLVVPGTPAAARKFSDVLASGRNVSDGDVLVSPGGSFTLGFFSPAATRRRYLGIWFSVSPDAAVHWVANRDHALNDTSGALMLTDAGVLLLLDGSGKVVWSSSATALPSATTSAAARLLDSGNLVVQGQGSGTALWQSFDYPTNTLLPGMKIGKNRWTGAEWYLLSWRSPADPSPGSYRYVTDGDEALPENVVLDGNGTEVYRTGVWNGRRFNGVPEMASFADMFSFQLTVSPGEVTYGYVAKAGAPFSRVVVTDDGVVRRLVWDAATRAWKTFFQAPGDSCDSYAKCGAFGLCDSNAGATSICRCVKGFSPASPAEWSMREYSGGCRRDVALDCGTDGFAVLRGVKLPDTRNASVDMGVKLDECRARCVANCSCVAYAAADLSGGGCIMWTKPFVDLRFIDNGQDIYQRLAKSEIGNLT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g15550 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0257900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008420 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008550 | RBH | 0.0 | 2.281307 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008580 | RBH | 0.0 | 9.139871 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008400 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008260 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0124200 | RBH | 0 | 0.0778465 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008200 | RBH | 0.0 | 0.193612 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0131900 | RBH | 0.009961 | 0.0554425 | 0.0077 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008440 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008300 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008470 | RBH | 0.000000 | 0.947466 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008290 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008200 | RBH | 0.0 | 0.0 | 0.0 |
