Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0015080 | OGI:10043300 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:20148348-20153608 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaacacaaaaaatataccaagatctctgttttggaacacaagggtaaactttcttcaaagtagtaaaatcaattgaagagccatcataagaatcccagaatgtctgtaaattattgatctgaatacaaaataaaaaaaatcaatcaactacaaaaaccaagaagaaaaaaactgaatgaaaacgcatttaaaattaaaatatcataccagtaagcattcaatgtcttcaaaatagggatcacctttttcatgtaaagaatctaagaggaccaacattctgtcctttatatcaacaacaaaaaggaaccaatgttcaaggtgttcgatggggaaaaatagctgcaaaaaatcattcagaattaacaacataactttggaaaatttacatgagcatgaaaagaaaaaaaataccatgtcagaaaggtgcaacttcctagcactagctgctccaagaaacgatcttttcaccttgctcaaatcagcacaagatagatcagttaacaatagttcgtgaaaaaaaattaaaagtgaaataaacataccaaaaaatatgtaacatatcaacattaacagaaaaaagcacaaatttgaaaaataactacttacaccaatagaagagaagaaatagtgtctcttggtgtttgaaggatgattgttgttgaacaaaacacggcaaaacacattgataacatagctcaatacagtaccacctttcatgagagattgcccaaaagaagagaattttgctctaacattatcaatgtctacagcatcataactacAaaaaaaagatataaaaagaaaagcaaagtaagaaacatgcataatgcaaaaactataaaaatatatgtaaaggaaactgtacctatgccatttagagctctcggacaacttgcatattgcattgtaatgtctcttttctttatctgacactggaaatcggcgtctaacaaaaagaacataaggatctgaaaatttccgagaaggaactaagactcttctagggccatggggaggtaattttccaccggtagaactcaaatccaggttgttacttttcaacatgttcttggcattatacaaattatcagtctgggtacacaacaccttgcagcaatcaggaaatgtagaatgaccaagatattccacatcaggagaattctaaaaaaaaagcagaaaaaaataattatagaaaaaagtaacttaggacaatatataaatatagtcaacaagaataagaacatacagtaacatcatcaaaacgcctcttcttcacattctgaatacaatgagttctgcttgttccttcattattatttataccaattacttgaacaggtgaattgtcaagacagtgaaaagatataccaggctacaacaaataaaaaaaataagagaaagtcaaaaaataaagcatacagaaacatgacatcacaaaatctattcaagaaTttttaaaaaaagaaaagacacaagccaatAaaaaaggaatacctgtgatgaagaggaagtgacatatcgagggttaagatattccttttgacatgaaagtgacttagcataaccaacagcttcatcttcacaagaatcaattaaatcagggaacaatggtcctcttttgtcatcattgttgagttgagataatcttgatttaattttatttgcaacattcctaacagcagcaacagcagatacagtaggacctgaagctggcaaaataactatgataagaactaacagaatttacaaattttcgaaatagaaaatttaagataaaatctagcaaagaaaaatcacaaaccagatcgagaatgttcaaatcgtgaattggagttattagcatatccaacttcaGgggttagtaaaccttgatctaggcaaaaatAaaaaattaacagcaacgcaaacttaagaaaataaaaaattaacaatgcatcaccaagtaccttttttaaagtttggtgaaagggaaaatctaacagcagatttagagacaataacagaatcatcatttacctaaacaagaacataaagttagaaaacttaaactAAaaaaataaattataatcataagaagcagacacatacccccaattccttatcatgagaaggtgtatggcgaaaacttgtttcattagctttactagcaacagatttattggtacctaaaaaaataaaacatcaaagaacataaatagaagaaaatttaaaaatataataaaattaaaagaacatagaagaaaacttacttccattgttatgagcatcacaagggatttcattttcaacatcaattgcatagttaggctgaaacccagggttgatatcatcaaaaattaagttttcatcaggatcaccaccatctctagaaccagcatattcacatagcaagagcataatgctgatagcaatatcttcacaagactcactgtcaacaatgtgattggcagaacaatgactaacaaccattgaacaaattttctccttaatgaaagcaggtaacatggtaccaatagcagactccaatttatctctgaatgtattaattctattttcaGggggtacaacctaaaacaaggAaaattttaggttgtaaagatgaatgaatgataagaattaatttataaaaagaaaaacacaagtaaaaataaataaaactaattgaactgaacatgtaccttgaaataagttgtatcattgaaatccttaatgggcctaaggccaaagttttcttcatcaactttgtcaaggtcagaatacaaagtAatcatattattcttccagtgagaaattctaggaaaaccAataggaacattcttgtcaccaaactcaacataatctagataaagcacctagcaaaataaaatatgaaaaagcaaagaaaaattaattaaaaaacaataataatatggaacaaagagaatggAaaaaaaattaataacttactgcccagagaaaccagcatccacccaaggtattAaacttttggatctttttgatggaagtcatcatccattcgtacacaaattttgaccaatcatatgaccgaagctcatcaacattctcaaacacagtcaaatacttggtgctagggaccAaagaagagtttggacaaagaaaacaagccattgcaacaatcaaaaatgaagtaataacttcatcatcagagagagtttcctttcggatgaacatatcaccaaagaatctcacagatggaagagcgctcttgccaaactttgaaagaataaaagactttccagcatcacaatcagttgggaactccataccaccaataggcatacccaaaatatgatgaacacattctttattaattgcaatgactttatctttcaaaacaatttgagaagacttcacatcaacatgatttgcaatccaagaagcaaatttGtttGggacataagcattgtcaaacattagcaaagaattaaaaccatagtcaccaataatacgcttctgatcaggagataaagaagatagaactgttgagaaataTtttgttgagaatctgctatatgagggctcagtcttcgaatgaactttagatttcttatcctaaaaaacaagtgtagaagtgtgttaaaaacttatttactaaattagaatatttaaaagctaaaagagaagaataataattacaattacatataccagaacagtacattagcatgaataaaaacaaaaaaaaatcatagggaggtagggagtgagggggtaaccatataaagcctaagaggcaaccatatacactcatgaacagaaacatataaaatttggtcccggctgtatagcctaacatttaaaatcataatatatctgaaaccttactagtaggaaactaatccaagcaaactaacacaaaatcacacatcaaaacagatatacttgagatagcacccaatcttaatagcaccatccatgctgccatacatatgcaaaatcaaacactagaagtagaaattacagtgatttgaaattaaaattacaattgtaaattcaatgcatatagcatgtaagtgtactgtaattttactagAaattgtctgtAaaattttggaaacctaaactaagctataagtgcagaaaccatcactactgactattattttgcaaccttacaaacctgcacagccccgAaaaaaagtttaagctcatatcatattaaaatctgctgcgtgtagaacaaaaaaaaacacttgagaaaactaatccaagcaaactaacacaaatcacacatcaaaacagatatacttgagaaaaaattagacacaatgacacacaaaaaaaaacatatccataacacgtgttatggtggctatgtttgcataatactagattgaattagttacatgggaaacatgaatatgacgtcgcatgcatgaaagctaccaaggatacttaggtgcaggatatgtgaaagaaaacaaagaaggtattagtgccaaaCaacaagagaagaaaaaacaaaaaactcaacaacgttggctgcactgaactgtgttgagagaatagatacgaatctgtatagtcacaactacaacctgaaaaatactcacatcttcaacataactaaTagtagcctataatagcatggtagcaaggttcagagtaccgcattgtacacatggaccaaacagaacAaatatAaaattttattttgcaaaaaaaaaacagaacAattccaatctgaaaataactatccacttcattagtactacatttcctttgaccgaattaattctccgtttcattgataagttaacacaagattataagcaacaagaaacccataaaatagaacaaaaaaatgccatgcataataaaatatgctaataaaaaaagatacatacaatggattgtgaaaattgacagaagaagtgtcaaccaaattcTttttcacttcttgaacaatctacaaatatgaaattgagcaacccattaaacaatataaaattaaattaacacaactcaacaaaaaaatattcacataccattttcctgagcacaacagagagtaaaccatcaatttcaccatgttcaggaccttcatcaacctaaaaaaaaagaaaaataatgtaataccaaattaaaggtaaacttaaacagcataatacaataataaaaatttaaaatataacttacatcattaccaacttcataatcaacatgaaaatcttcacctccatcagaatcaacttcaatgagatttttacccaaccttcttgtttggacacgaggcat
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| CDS seq | atgcctcgtgtccaaacaagaaggttgggtaaaaatctcattgaagttgattctgatggaggtgaagattttcatgttgattatgaagttggtaatgatgttgatgaaggtcctgaacatggtgaaattgatggtttactctctgttgtgctcaggaaaatgattgttcaagaagtgaaaaAgaatttggttgacacttcttctgtcaattttcacaatccattgtttgataagaaatctaaagttcattcgaagactgagccctcatatagcagattctcaacaaaAtatttctcaacagttctatcttctttatctcctgatcagaagcgtattattggtgactatggttttaattctttgctaatgtttgacaatgcttatgtccCaaaCaaatttgcttcttggattgcaaatcatgttgatgtgaagtcttctcaaattgttttgaaagataaagtcattgcaattaataaagaatgtgttcatcatattttgggtatgcctattggtggtatggagttcccaactgattgtgatgctggaaagtcttttattctttcaaagtttggcaagagcgctcttccatctgtgagattctttggtgatatgttcatccgaaaggaaactctctctgatgatgaagttattacttcatttttgattgttgcaatggcttgttttctttgtccaaactcttcttTggtccctagcaccaagtatttgactgtgtttgagaatgttgatgagcttcggtcatatgattggtcaaaatttgtgtacgaatggatgatgacttccatcaaaaagatccaaaagttTaataccttgggtggatgctggtttctctgggcagtgctttatctagattatgttgagtttggtgacaagaatgttcctatTggttttcctagaatttctcactggaagaataatatgatTactttgtattctgaccttgacaaagttgatgaagaaaactttggccttaggcccattaaggatttcaatgatacaacttatttcaaggttgtaccccCtgaaaatagaattaatacattcagagataaattggagtctgctattggtaccatgttacctgctttcattaaggagaaaatttgttcaatggttgttagtcattgttctgccaatcacattgttgacagtgagtcttgtgaagatattgctatcagcattatgctcttgctatgtgaatatgctggttctagagatggtggtgatcctgatgaaaacttaatttttgatgatatcaaccctgggtttcagcctaactatgcaattgatgttgaaaatgaaatcccttgtgatgctcataacaatggaagtaccaataaatctgttgctagtaaagctaatgaaacaagttttcgccatacaccttctcatgataaggaattgggggtaaatgatgattctgttattgtctctaaatctgctgttagattttccctttcaccaaactttaaaaaagatcaaggtttactaacccCtgaagttggatatgctaataactccaattcacgatttgaacattctcgatctgcttcaggtcctactgtatctgctgttgctgctgttaggaatgttgcaaataaaattaaatcaagattatctcaactcaacaatgatgacaaaagaggaccattgttccctgatttaattgattcttgtgaagatgaagctgttggttatgctaagtcactttcatgtcaaaaggaatatcttaaccctcgatatgtcacttcctcttcatcacagcctggtatatcttttcactgtcttgacaattcacctgttcaagtaattggtataaataataatgaaggaacaagcagaactcattgtattcagaatgtgaagaagaggcgttttgatgatgttactaattctcctgatgtggaatatcttggtcattctacatttcctgattgctgcaaggtgttgtgtacccagactgataatttgtataatgccaagaacatgttgaaaagtaacaacctggatttgagttctaccggtggaaaattacctccccatggccctagaagagtcttagttccttctcggaaattttcagatccttatgttctttttgttagacgccgatttccagtgtcagataaagaaaagagacattacaatgcaatatgcaagttgtccgagagctctaaatggcatagttatgatgctgtagacattgataatgttagagcaaaattctcttcttttgggcaatctctcatgaaaggtggtactgtattgagctatgttatcaatgtgttttgccgtgttttgttcaacaacaatcatccttcaaacaccaagagacactatttcttctcttctattggtgtgaaaagatcgtttcttggagcagctagtgctaggaagttgcacctttctgacatgctatttttccccatcgaacaccttgaacattggttcctttttgttgttgatataaaggacagaatgttggtcctcttagattctttacatgaaaaaggtgatccctattttgaagacattgaatgcttactgatcaataatttacagacattctgggattcttatgatggctcttcaattgattttactactttgaagaaagtttacccttgtgttccaaaacagagatcttggtatattttttgtgtttaa
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| Protein seq | MPRVQTRRLGKNLIEVDSDGGEDFHVDYEVGNDVDEGPEHGEIDGLLSVVLRKMIVQEVKKNLVDTSSVNFHNPLFDKKSKVHSKTEPSYSRFSTKYFSTVLSSLSPDQKRIIGDYGFNSLLMFDNAYVPNKFASWIANHVDVKSSQIVLKDKVIAINKECVHHILGMPIGGMEFPTDCDAGKSFILSKFGKSALPSVRFFGDMFIRKETLSDDEVITSFLIVAMACFLCPNSSLVPSTKYLTVFENVDELRSYDWSKFVYEWMMTSIKKIQKFNTLGGCWFLWAVLYLDYVEFGDKNVPIGFPRISHWKNNMITLYSDLDKVDEENFGLRPIKDFNDTTYFKVVPPENRINTFRDKLESAIGTMLPAFIKEKICSMVVSHCSANHIVDSESCEDIAISIMLLLCEYAGSRDGGDPDENLIFDDINPGFQPNYAIDVENEIPCDAHNNGSTNKSVASKANETSFRHTPSHDKELGVNDDSVIVSKSAVRFSLSPNFKKDQGLLTPEVGYANNSNSRFEHSRSASGPTVSAVAAVRNVANKIKSRLSQLNNDDKRGPLFPDLIDSCEDEAVGYAKSLSCQKEYLNPRYVTSSSSQPGISFHCLDNSPVQVIGINNNEGTSRTHCIQNVKKRRFDDVTNSPDVEYLGHSTFPDCCKVLCTQTDNLYNAKNMLKSNNLDLSSTGGKLPPHGPRRVLVPSRKFSDPYVLFVRRRFPVSDKEKRHYNAICKLSESSKWHSYDAVDIDNVRAKFSSFGQSLMKGGTVLSYVINVFCRVLFNNNHPSNTKRHYFFSSIGVKRSFLGAASARKLHLSDMLFFPIEHLEHWFLFVVDIKDRMLVLLDSLHEKGDPYFEDIECLLINNLQTFWDSYDGSSIDFTTLKKVYPCVPKQRSWYIFCV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0015080 | OsLaMu_10g0015080.01 | Chr10 | 20148348 | 20153608 | - | NAM | ||
| CDS seq | atgcctcgtgtccaaacaagaaggttgggtaaaaatctcattgaagttgattctgatggaggtgaagattttcatgttgattatgaagttggtaatgatgttgatgaaggtcctgaacatggtgaaattgatggtttactctctgttgtgctcaggaaaatgattgttcaagaagtgaaaaAgaatttggttgacacttcttctgtcaattttcacaatccattgtttgataagaaatctaaagttcattcgaagactgagccctcatatagcagattctcaacaaaAtatttctcaacagttctatcttctttatctcctgatcagaagcgtattattggtgactatggttttaattctttgctaatgtttgacaatgcttatgtccCaaaCaaatttgcttcttggattgcaaatcatgttgatgtgaagtcttctcaaattgttttgaaagataaagtcattgcaattaataaagaatgtgttcatcatattttgggtatgcctattggtggtatggagttcccaactgattgtgatgctggaaagtcttttattctttcaaagtttggcaagagcgctcttccatctgtgagattctttggtgatatgttcatccgaaaggaaactctctctgatgatgaagttattacttcatttttgattgttgcaatggcttgttttctttgtccaaactcttcttTggtccctagcaccaagtatttgactgtgtttgagaatgttgatgagcttcggtcatatgattggtcaaaatttgtgtacgaatggatgatgacttccatcaaaaagatccaaaagttTaataccttgggtggatgctggtttctctgggcagtgctttatctagattatgttgagtttggtgacaagaatgttcctatTggttttcctagaatttctcactggaagaataatatgatTactttgtattctgaccttgacaaagttgatgaagaaaactttggccttaggcccattaaggatttcaatgatacaacttatttcaaggttgtaccccCtgaaaatagaattaatacattcagagataaattggagtctgctattggtaccatgttacctgctttcattaaggagaaaatttgttcaatggttgttagtcattgttctgccaatcacattgttgacagtgagtcttgtgaagatattgctatcagcattatgctcttgctatgtgaatatgctggttctagagatggtggtgatcctgatgaaaacttaatttttgatgatatcaaccctgggtttcagcctaactatgcaattgatgttgaaaatgaaatcccttgtgatgctcataacaatggaagtaccaataaatctgttgctagtaaagctaatgaaacaagttttcgccatacaccttctcatgataaggaattgggggtaaatgatgattctgttattgtctctaaatctgctgttagattttccctttcaccaaactttaaaaaagatcaaggtttactaacccCtgaagttggatatgctaataactccaattcacgatttgaacattctcgatctgcttcaggtcctactgtatctgctgttgctgctgttaggaatgttgcaaataaaattaaatcaagattatctcaactcaacaatgatgacaaaagaggaccattgttccctgatttaattgattcttgtgaagatgaagctgttggttatgctaagtcactttcatgtcaaaaggaatatcttaaccctcgatatgtcacttcctcttcatcacagcctggtatatcttttcactgtcttgacaattcacctgttcaagtaattggtataaataataatgaaggaacaagcagaactcattgtattcagaatgtgaagaagaggcgttttgatgatgttactaattctcctgatgtggaatatcttggtcattctacatttcctgattgctgcaaggtgttgtgtacccagactgataatttgtataatgccaagaacatgttgaaaagtaacaacctggatttgagttctaccggtggaaaattacctccccatggccctagaagagtcttagttccttctcggaaattttcagatccttatgttctttttgttagacgccgatttccagtgtcagataaagaaaagagacattacaatgcaatatgcaagttgtccgagagctctaaatggcatagttatgatgctgtagacattgataatgttagagcaaaattctcttcttttgggcaatctctcatgaaaggtggtactgtattgagctatgttatcaatgtgttttgccgtgttttgttcaacaacaatcatccttcaaacaccaagagacactatttcttctcttctattggtgtgaaaagatcgtttcttggagcagctagtgctaggaagttgcacctttctgacatgctatttttccccatcgaacaccttgaacattggttcctttttgttgttgatataaaggacagaatgttggtcctcttagattctttacatgaaaaaggtgatccctattttgaagacattgaatgcttactgatcaataatttacagacattctgggattcttatgatggctcttcaattgattttactactttgaagaaagtttacccttgtgttccaaaacagagatcttggtatattttttgtgtttaa
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| Protein seq | MPRVQTRRLGKNLIEVDSDGGEDFHVDYEVGNDVDEGPEHGEIDGLLSVVLRKMIVQEVKKNLVDTSSVNFHNPLFDKKSKVHSKTEPSYSRFSTKYFSTVLSSLSPDQKRIIGDYGFNSLLMFDNAYVPNKFASWIANHVDVKSSQIVLKDKVIAINKECVHHILGMPIGGMEFPTDCDAGKSFILSKFGKSALPSVRFFGDMFIRKETLSDDEVITSFLIVAMACFLCPNSSLVPSTKYLTVFENVDELRSYDWSKFVYEWMMTSIKKIQKFNTLGGCWFLWAVLYLDYVEFGDKNVPIGFPRISHWKNNMITLYSDLDKVDEENFGLRPIKDFNDTTYFKVVPPENRINTFRDKLESAIGTMLPAFIKEKICSMVVSHCSANHIVDSESCEDIAISIMLLLCEYAGSRDGGDPDENLIFDDINPGFQPNYAIDVENEIPCDAHNNGSTNKSVASKANETSFRHTPSHDKELGVNDDSVIVSKSAVRFSLSPNFKKDQGLLTPEVGYANNSNSRFEHSRSASGPTVSAVAAVRNVANKIKSRLSQLNNDDKRGPLFPDLIDSCEDEAVGYAKSLSCQKEYLNPRYVTSSSSQPGISFHCLDNSPVQVIGINNNEGTSRTHCIQNVKKRRFDDVTNSPDVEYLGHSTFPDCCKVLCTQTDNLYNAKNMLKSNNLDLSSTGGKLPPHGPRRVLVPSRKFSDPYVLFVRRRFPVSDKEKRHYNAICKLSESSKWHSYDAVDIDNVRAKFSSFGQSLMKGGTVLSYVINVFCRVLFNNNHPSNTKRHYFFSSIGVKRSFLGAASARKLHLSDMLFFPIEHLEHWFLFVVDIKDRMLVLLDSLHEKGDPYFEDIECLLINNLQTFWDSYDGSSIDFTTLKKVYPCVPKQRSWYIFCV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0946800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g34880 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0946800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009230 | SBH | 1.089063 | 22.967749 | 20.505877 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015760 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015190 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020870 | SBH | 0.0 | 0.061020 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014840 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0298800 | RBH | 0.021897 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0014770 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0321700 | RBH | 0.0059465 | 0 | 0.0266885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0014490 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014400 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0014830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0014530 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009380 | SBH | 0.579052 | 10.434855 | 5.091031 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014760 | RBH | 0.0 | 0.0 | 0.0 |
