Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0002050 | OGI:08004710 | 13/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:1753877-1760384 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGGACGAAAGCGAGCGGAGCGGTATGGTAATCGACGACGTCGGCGGCGGCGGACTGAATCTTCCAATTGTTGCAGGCAAGCGTAAGCGGGAGCTCACATGGGAAGAGAAGGCGGCGTTGACAGTTCTTGATATTCCTGCCGAGCGTGATTGCAGCCTCATAGACTCGGAGAAAGATTACTCATGTGAGTATAtatataatccacaactaattgatcgatcattcatcattcatgtacatctgttctgctttgttcactcgtttgcgtcagtcagtatatccctcttaattggtacttccttcgttttatattataagactttatattattgtctgcattcattcatatatatattaatgaatctAaacatatatatgtgtatagattcattaatatctatatgaatattggtagtgctagAaagtcttataatatgaaacggagggagtatttttttttgtttgttggatgggAaacatcaaaaccaaaactttgcttgttttgcagctatatggtggctgccaggccggagaacacgctagtataTttggcattgacaagaatggggatgattctgatgaaccgtgtgctAaggatgatgccaagcaaagtgatatggctgctctgaaggaggaggagGAaaattgggagctggacagtgaaccagagctcacataggatgagAaggtggttcaagttctaaacatggttcgacgccgagagatcaccgaatataaccccaagcagttttgctcaattcctactcgattttgtgcctacaacatagccttctttgacctggacaaagagtgtgagtacatccatccactgttagggttttctataggatcgtctagccttagatctagtcgggtagagctcttgggtggatgaacaaatatggatgaaacaacagagagggaagtgagagggtttagggatgcaactggttgacgttgaggaggaggaagaggcgccggccatcgtcgttgttgtcgcgcttgacgtggacggcggcgacggtGgtcgtgacggcggcggtcgtaggcgaggacgacgaggcgtgacacggcgtgatgcttcccgtcactggctgcgccccctcgatcagttagggttttgtgggtggagttggtggtggcagtgaacctcgtatcgtgtgccgcctcggcctccacctctgtttatatggcgcagggtgacgggggCccaccagctaatgggctgggcgCcccccgatcagggcacgggtcaaggtccctttgtgccgttgggctcaaggggaggtagatctatctAacattctcccccttgatctcactatttcttttagcctttttctattccatcacagatttgcacatagagcatgtttcatcgtcacggataattgccgatggattcgacagccActatacacatctgtattatactttaacttttgggccctgtagtccaggattcataaGgcttcccttaaAcccatgccGgctacatgttccttgaacacgttgggtggtaGgtctttcgtgagcggatccgcgagcatcctttctgTtctaatgtgctcgagactgattgtttaatcccggactttgtccttcacaacatagtactttatgtcaatgtgtttggcagcaccacttgactgattgttgtgagcgtacattactgcaggtttgttatcgcagtataactttagtactcttcctgtccatagctcatacggtgttttgggcaccgatttgcttggaactctgttgaggatatgaatggcgGCttttaacgcctccatccatAaacccaatggtagggTggagtagctcatcatgctgcgcaccatatccataagggtacggttacgcctttcagctaccccattctgttgaggttcgcccggtgttgaatagtgggctactattccattctctagcaagaaccttgcaaaaggtcagggacgtgcccatAaggcgtatgacgaccatagtactcccccccacggttagatcttactattttaatctttatatcatgctgattttcaacttcagctttgaatatcttaaatttattcaatgcttctgatttttctttaattggatAaatataaccataacgggagtaatcgtctgtgaatgttatgaacgagtcatagccatccacacttttcacaggaaatggaccacaaatatctgtatGaatgatctccAaaattcctgcgcttcgttttgcaccctttttgatgctctttacAaattttcctttaatgcattctatgcattgttctaaatatgagaactccaatggaggaagaatatcattcttaactagtctctcAattctccccctcgaaatatggcctaaacgacagtgccacaatttcgatgagacatcagagttctctttcttttcttgttttcttttgtcaacgaggacacAacattcacattctcagaaagagatAaaaaataaagctcatcttgcaacacaacaagaccaatacatgcattattatactatagttcacatttgtcatttccAaaatggcaatcatatccatcaaaatccaatttcgatacacttattaaatttgtttgcaaagaaGggacatacaaaacatctcgaagtAaaagtgtgaagccattcgcgagctctaggcgaagatctccaacagcttcaacttttgcttcaactccattggcaactctaatggatctttcgcttctttgcgtagtcctcgtcgaacggaatccctttaaaCAattacacgcatgaatagttgctccagaatcaatccaccatgtggatctagaataaccaacataatgagattcatttacaaatgtaataatgttatcacctttcTttgccatgatcattttcaggaagtcaGgacaatctttcttgtaatgtcatgtcttcttgcggtggagacactgatccttttcaacagtgaactgttgttgctgaggcagatgctgaggctgtttcccttttgagggagatgatttgtggctcgttttcttgttatctttaacatagttaatagagccaccattggActctttgattctttcctcctattgcacacaattaGagatgagcttttcaaaattccatttctctatacttatgttgaagttgacaataaagttgtcaaaatgctttggcaatgaggccataaccagatggaccagAaagtcatctatgatgcccaaatccattggcttcaacttgaaagccatgttgctcatcctaagaatgtggtctcttacaccacccccatggtacctctctgtcacaagctgctttatcagctgtgtcgcataagtctttgaagAaccagtaaactggctctttattctttcgaggtactcagagacggtgtcacactctgggattgagcccaatatggttggctcaatcgtgttctttaccacagccaaacatttcttgttagctaaggaccatttcatatgctcaatacAaGaaatgtttggctatggtaaagaacacgattgagccaaccatattgggctcaatcccagagtgtgacaccgtctctgagtacctcgaaagaataaagagccagtttactggttcttcAaagacttatgcgacacagctaataaagcagcttgtgacagagaggtaccatgggggtggtgtaagagaccactttcttaggatgagcaacatggcttccaagttgaagccaatggaTttgggcatcacagatgactttctggtccatctggttttggcctcattgccaaagcattttgacaactttattgtcaacttcaacataaatctagagcaatggaattttggaaagctcatcgctaattgtgtgcaagaggaggaaagaatcaaagagtccaatggtGgctctattaactatgttAaagataacaagaaaacgagccacaaatcatctccctcaaaagggAaacagcctcagcatctgcctcagcagcAacagttcactgttgaaaatgatcagtgtctccactgcaagaagacaggacattacaagaaagattgtcttgacctcctgaaaatgatcatggcaaagaaaggttagaacattattacatttgtaaatgaatctcattatgttggttattttagatccacatagtggattgattctggagtaactattcatgcgtgtaattgtttaaagggattccgttcgacgaggactatgcaaagaaacaaaagatccattagagttgccaatggagttgaagcAaaagtagaagctgttggagtctttgcctatAGctctcgaatggcttcacacttttacttcgagatgttttttatttaataagtgtatcgaaattggattttgatggatatgattgccattttggaaatggcaaatgtgaactatggtataataatgcatgtattggtcttgctgtgttgcaagatgagctttatttgttatcttttgctgagaatgttaatgttgtgtcctcattgacaaaaggAaacaagaaaagaaagagaactcctgatgtctcatcgaaattatggcactgtcgtttaggccatatttcaagggggagaattgagactagttaagaatgacattctttctccattggagttctcagatttagaacaatgcatagaatgcattaaaggaaaatttgtgggtggagttggcggcggcagcgaacctcgtattgtgtgccgCcccggcctccacccctgtttatatggcgtggggtgacgggggcccaccagccaatGgggctgggcgccctcgatcagggcgcaggtcaaggtccccTtgtgcccttgggctcaaGgggagggagatctatctaacatccatttgttataatatcatccttgttCcttgttcattctttgactattgtacatgtcttaaaaaaatttactttcctggtttgatttatgtctctggcttgattttgcagcaaagcttgcacgtggaccacctatcaagtctctagctttccccgactactggtGggagatggactctgtcaatgtgattgcaatcaaggtggccgagtctgatgtgggctaccctatcagggtatttggcactgtgctggccagggatgagtatgatttcaggtgtgtctatctgttcaggcgtgacaggaacaatccccagatcatcacctcgccggtatgttactgattcgttcctcctccttgctagattaatactatttactgttcaaatccaaatgccattgcctttacaatccgctgtctgatattctacactataaatgacctgttaattaggctcacattgttaagtgaaatgtagacggttgcatagttccataatggctggtgaaacgcctgatacgatAGaaatcctgtttcctggacattaaaatccctactgccagatcttaaaccttgctgtcaatatcatatatccaccgaatctgattgcctggtagtccattcctgctgtctaagagggtcaggacagttactgttggAacatcaatcaatccatgacttccccttttttgtgagatttgatttacttaattagtttctatatcccaagatcctggtacttttacctgttatactattttgttaatccagtgcaacggtagtgctctgggatcatgtacgttttgtactggaaaaagtggaaacaaaagaatttatattggcatgttgctcatttgaacgtgggaatttgaaatgcaattcacaggctgtttcatatacctaaaattattatctgtatgtattatgtacccaaatttctcttaacatattgttggcactgtctgaactgtattcgacTtatcgagcctggtgtttttggtggcatttctgacatgatttcccctaatctatttacaggaggacacactaactctgacaggacctaatcgagcgctGggtgcaacagacaaaatgtatttcgagttcAatttgaagattagagacgatggcgatgtcgacaaagatttctgcaaaggtgtgcgagaacacaatgccatctgctatacaaagcagccgatgacTttatcgctagagagctgcctgagtacaattgattttgtgtatagtcctgttcaattagctgtggaagcttctgttgcagtcaaaattaagggggttgtatccacgtttttcactggcaaagtgactgcttggactactggagatgatcagaacaaaatcatcctgtatgacagtgaagtggaaggcagcaacagagttgttggagctgatggatcagtcgatctgactcgctgtttcgtagccgtcaatttggatgatgaactggtgctcaatgtctgtgtttctgaaggagctggctcAatctttgagctcgttcttggacacaatgatgaagaatgtgtccgtgagcaaggtccctatgaactgcaggtgaatgttgtttggacagctgccttTAagcatcgacagcgcagaaaattgtttgagcgtatcggtgacttccgcgtgttaaggtga
More
|
||||||||||
| CDS seq | ATGGCGGACGAAAGCGAGCGGAGCGGTATGGTAATCGACGACGTCGGCGGCGGCGGACTGAATCTTCCAATTGTTGCAGGCAAGCGTAAGCGGGAGCTCACATGGGAAGAGAAGGCGGCGTTGACAGTTCTTGATATTCCTGCCGAGCGTGATTGCAGCCTCATAGACTCGGAGAAAGATTACTCATcaaagcttgcacgtggaccacctatcaagtctctagctttccccgactactggtGggagatggactctgtcaatgtgattgcaatcaaggtggccgagtctgatgtgggctaccctatcagggtatttggcactgtgctggccagggatgagtatgatttcaggtgtgtctatctgttcaggcgtgacaggaacaatccccagatcatcacctcgccggaggacacactaactctgacaggacctaatcgagcgctGggtgcaacagacaaaatgtatttcgagttcAatttgaagattagagacgatggcgatgtcgacaaagatttctgcaaaggtgtgcgagaacacaatgccatctgctatacaaagcagccgatgacTttatcgctagagagctgcctgagtacaattgattttgtgtatagtcctgttcaattagctgtggaagcttctgttgcagtcaaaattaagggggttgtatccacgtttttcactggcaaagtgactgcttggactactggagatgatcagaacaaaatcatcctgtatgacagtgaagtggaaggcagcaacagagttgttggagctgatggatcagtcgatctgactcgctgtttcgtagccgtcaatttggatgatgaactggtgctcaatgtctgtgtttctgaaggagctggctcAatctttgagctcgttcttggacacaatgatgaagaatgtgtccgtgagcaaggtccctatgaactgcaggtgaatgttgtttggacagctgccttTAagcatcgacagcgcagaaaattgtttgagcgtatcggtgacttccgcgtgttaaggtga
More
|
||||||||||
| Protein seq | MADESERSGMVIDDVGGGGLNLPIVAGKRKRELTWEEKAALTVLDIPAERDCSLIDSEKDYSSKLARGPPIKSLAFPDYWWEMDSVNVIAIKVAESDVGYPIRVFGTVLARDEYDFRCVYLFRRDRNNPQIITSPEDTLTLTGPNRALGATDKMYFEFNLKIRDDGDVDKDFCKGVREHNAICYTKQPMTLSLESCLSTIDFVYSPVQLAVEASVAVKIKGVVSTFFTGKVTAWTTGDDQNKIILYDSEVEGSNRVVGADGSVDLTRCFVAVNLDDELVLNVCVSEGAGSIFELVLGHNDEECVREQGPYELQVNVVWTAAFKHRQRRKLFERIGDFRVLR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0002050 | OsLaMu_08g0002050.01 | Chr08 | 1753877 | 1760384 | + | NAM | ||
| CDS seq | ATGGCGGACGAAAGCGAGCGGAGCGGTATGGTAATCGACGACGTCGGCGGCGGCGGACTGAATCTTCCAATTGTTGCAGGCAAGCGTAAGCGGGAGCTCACATGGGAAGAGAAGGCGGCGTTGACAGTTCTTGATATTCCTGCCGAGCGTGATTGCAGCCTCATAGACTCGGAGAAAGATTACTCATcaaagcttgcacgtggaccacctatcaagtctctagctttccccgactactggtGggagatggactctgtcaatgtgattgcaatcaaggtggccgagtctgatgtgggctaccctatcagggtatttggcactgtgctggccagggatgagtatgatttcaggtgtgtctatctgttcaggcgtgacaggaacaatccccagatcatcacctcgccggaggacacactaactctgacaggacctaatcgagcgctGggtgcaacagacaaaatgtatttcgagttcAatttgaagattagagacgatggcgatgtcgacaaagatttctgcaaaggtgtgcgagaacacaatgccatctgctatacaaagcagccgatgacTttatcgctagagagctgcctgagtacaattgattttgtgtatagtcctgttcaattagctgtggaagcttctgttgcagtcaaaattaagggggttgtatccacgtttttcactggcaaagtgactgcttggactactggagatgatcagaacaaaatcatcctgtatgacagtgaagtggaaggcagcaacagagttgttggagctgatggatcagtcgatctgactcgctgtttcgtagccgtcaatttggatgatgaactggtgctcaatgtctgtgtttctgaaggagctggctcAatctttgagctcgttcttggacacaatgatgaagaatgtgtccgtgagcaaggtccctatgaactgcaggtgaatgttgtttggacagctgccttTAagcatcgacagcgcagaaaattgtttgagcgtatcggtgacttccgcgtgttaaggtga
More
|
|||||||
| Protein seq | MADESERSGMVIDDVGGGGLNLPIVAGKRKRELTWEEKAALTVLDIPAERDCSLIDSEKDYSSKLARGPPIKSLAFPDYWWEMDSVNVIAIKVAESDVGYPIRVFGTVLARDEYDFRCVYLFRRDRNNPQIITSPEDTLTLTGPNRALGATDKMYFEFNLKIRDDGDVDKDFCKGVREHNAICYTKQPMTLSLESCLSTIDFVYSPVQLAVEASVAVKIKGVVSTFFTGKVTAWTTGDDQNKIILYDSEVEGSNRVVGADGSVDLTRCFVAVNLDDELVLNVCVSEGAGSIFELVLGHNDEECVREQGPYELQVNVVWTAAFKHRQRRKLFERIGDFRVLR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0132100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g03790 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0132100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002210 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0002260 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0002260 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0002230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002070 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0026700 | RBH | 0 | 0 | 0.0068475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0001950 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0029500 | SBH | 0.0217135 | 0 | 0.061319 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002150 | SBH | 0.000000 | 0.064393 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002140 | SBH | 0.178790 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002130 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002090 | RBH | 0.467381 | 5.224456 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002110 | SBH | 0.0 | 0.0 | 1.135179 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002000 | RBH | 0.0 | 0.000000 | 0.0 |
