Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0002150 | OGI:08004920 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:1775436-1778453 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagaaaaccctaaggctctctcccctccggcggcgacggggcgatcagggctgccagcgaacacgtctacggtacactcctcgatcgcctcgattctctcttccgattcgacgaaatcgcattgtatgggcacctaatctcacctgtgtccctttctttccgtgttcttcttctgcatgagcgtcaagatggcggacgaaagcgagaggggcggtatggtaatcgacgacgtcggcggcggcggactgaatcttgcaattgttgcaggcaagcgtaagcgggagctcacatgggaagagaaggcgttgacagttcttgatattgtcgggtcccaacagcaccccgcatgccaacctgccgagcgtgattgcagcctcatagactcggagaaagattactcatgtgagtgtatatataatccacaactaatcgatcgatcattcatcattcatgtacatctgttctgcttagttcactcgtttgcgtcagtcagtatatccctcttaattggtttttttttcttgtttgttggatgggaaacatcaaaaccaaaactttgcttgttttgcagctatggccggctgccaggccggagaacacgctagtatatttggcattgacaagaatggggatgattctgatgaaccgtgtgctaaggatgatgccaagcaaagtgatgtggctcctctgaaggaggaggagaattgggagctggacagtgaaccagagctcacatgggatgagaaggtggttgaagttctaaacatagttcgacgccgagagatcaccgaatataaccccaagcagttttgctcaattcctactcgattttgtgcctacaacatagccttctttgacctggacaaagagtgtgagtacatccatccatttgtttgttataatatcatccttgttccttgttcattctttgattattgtacatgtcttaaaaaaatttactttcctggtttgatttatgtctctggcttgattttgcagcaaagcttgcacgtggaccacctatcaagtcactagctttccccgactactggtgggagatggactctgtcaatgtgattgcaatcaaggtggccgagtctgatgtgggttaccctatcagggtatttggcactgtgctggccagggatgagtacgatttcaggtgtgtctatttgttcaggcgtgacaggaacaatccacagatcatcacctcgccggtatgttactgattcgttcctcctccttgctagattaatactatttattgttcaaatccatatgccattgccttttcaatccgctgtctgatattctacactataaatgacctgttaattaggctcacattgttaagtgaaatgtggacggttgcatagttccataatggctggtgaaatgcctgatacgatagaaatcctgtttcctggccattaaaatccctactgccagatcttaaaccttgctgtcaatatcgtatatccactgaatctgattgcctggtagtccattcctgctgtctaagagggtcaggacagttactgttggaacatcaatcaatccatgacttccccTtttttttgtgagatttgatttacttatttagtttctatatcccaagaccctggtacttttacctgttatactattttgttaatccagtgcaacggtagtgctctgggatcatgtacgttttgtactggaaaaaagtggaaacaaaagaatttatattggcatgttgctcatttgaacatgggagtttgaaatgcaattcacaggctgttcataacttcatagacctaaaattattatctgtatgtattatgtacccaaatttctcttaacatattgttggcactgtctgaactgtatttgacttatcgagcctagtgtttctggtggcatttctgacatgattttccctaatctatttataggaggacacactaactctgacaggacctaatcgagcgctgggtgcaatagacaaaatgtatttcgagttcaatttgaagattagagacggtgatgtcgacaaagatttctgcaaaggtgtgcgagaacacaatgccatctgctatacaaagcagccgatgactttatcgctagagagctgcctgagtagaattgattttgtgtatagtcctgttcaattagctgtggaagcttctgttgcagtcaaaattaagggggttgtatccaagtttttcactggcaaagtgactgcttggactactggagatgatcagaacaaaatcatcctgtatgacagtgaagtggaaggcaggaacagagttcttggagctgatggatcagtcgatctgactcgctgtttcgtagccgtcaatttggatgatgaactggtgctcaatgtctgtgtttctgaaggagctggctcaatctttgagctcgttcttggacacaatgatgaagaatgtgtccttgagcaaggtccctatgaactgcaggtgaatgttgtttggacagctgccttgaagcatcgacagcgcagaaaattgtttgagcgtatcggtgacttccgcgtgttaaggtgatatgtagtatgaagatttatatgggggaagctgttacatctcaagcagttctatcttgctatatagattataaTttttttgttcagctgagttgaactcgtgcttaactgaaaatctgcctgcaagacttatttagttatatgtactggtagactggtaatctataagattactgatgtctagtagggagtatggatctgtctggtagtctgtataaccttttctgaacctaccaaagtttAttttgcgttcttggagaagtgtcttgtctgtcattgttacttactgggttgtgagcatcggattgaggtagtttgtagaggtttgagcgccatgtgtgctctactgttgccatttgctgttgagagatgctgagaacctgacgtttatggctatatatatgttgatgttttgtaagttaatgctactactattgctagaactaagtaagttgattcattttatg
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| CDS seq | atggcggacgaaagcgagaggggcggtatggtaatcgacgacgtcggcggcggcggactgaatcttgcaattgttgcaggcaagcgtaagcgggagctcacatgggaagagaaggcgttgacagttcttgatattgtcgggtcccaacagcaccccgcatgccaacctgccgagcgtgattgcagcctcatagactcggagaaagattactcatctatggccggctgccaggccggagaacacgctagtatatttggcattgacaagaatggggatgattctgatgaaccgtgtgctaaggatgatgccaagcaaagtgatgtggctcctctgaaggaggaggagaattgggagctggacagtgaaccagagctcacatgggatgagaaggtggttgaagttctaaacatagttcgacgccgagagatcaccgaatataaccccaagcagttttgctcaattcctactcgattttgtgcctacaacatagccttctttgacctggacaaagagtcaaagcttgcacgtggaccacctatcaagtcactagctttccccgactactggtgggagatggactctgtcaatgtgattgcaatcaaggtggccgagtctgatgtgggttaccctatcagggtatttggcactgtgctggccagggatgagtacgatttcaggtgtgtctatttgttcaggcgtgacaggaacaatccacagatcatcacctcgccggaggacacactaactctgacaggacctaatcgagcgctgggtgcaatagacaaaatgtatttcgagttcaatttgaagattagagacggtgatgtcgacaaagatttctgcaaaggtgtgcgagaacacaatgccatctgctatacaaagcagccgatgactttatcgctagagagctgcctgagtagaattgattttgtgtatagtcctgttcaattagctgtggaagcttctgttgcagtcaaaattaagggggttgtatccaagtttttcactggcaaagtgactgcttggactactggagatgatcagaacaaaatcatcctgtatgacagtgaagtggaaggcaggaacagagttcttggagctgatggatcagtcgatctgactcgctgtttcgtagccgtcaatttggatgatgaactggtgctcaatgtctgtgtttctgaaggagctggctcaatctttgagctcgttcttggacacaatgatgaagaatgtgtccttgagcaaggtccctatgaactgcaggtgaatgttgtttggacagctgccttgaagcatcgacagcgcagaaaattgtttgagcgtatcggtgacttccgcgtgttaaggtga
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| Protein seq | MADESERGGMVIDDVGGGGLNLAIVAGKRKRELTWEEKALTVLDIVGSQQHPACQPAERDCSLIDSEKDYSSMAGCQAGEHASIFGIDKNGDDSDEPCAKDDAKQSDVAPLKEEENWELDSEPELTWDEKVVEVLNIVRRREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKSLAFPDYWWEMDSVNVIAIKVAESDVGYPIRVFGTVLARDEYDFRCVYLFRRDRNNPQIITSPEDTLTLTGPNRALGAIDKMYFEFNLKIRDGDVDKDFCKGVREHNAICYTKQPMTLSLESCLSRIDFVYSPVQLAVEASVAVKIKGVVSKFFTGKVTAWTTGDDQNKIILYDSEVEGRNRVLGADGSVDLTRCFVAVNLDDELVLNVCVSEGAGSIFELVLGHNDEECVLEQGPYELQVNVVWTAALKHRQRRKLFERIGDFRVLR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0002150 | OsLima_08g0002150.01 | Chr08 | 1775436 | 1778453 | + | NAM | ||
| CDS seq | atggccggctgccaggccggagaacacgctagtatatttggcattgacaagaatggggatgattctgatgaaccgtgtgctaaggatgatgccaagcaaagtgatgtggctcctctgaaggaggaggagaattgggagctggacagtgaaccagagctcacatgggatgagaaggtggttgaagttctaaacatagttcgacgccgagagatcaccgaatataaccccaagcagttttgctcaattcctactcgattttgtgcctacaacatagccttctttgacctggacaaagagtcaaagcttgcacgtggaccacctatcaagtcactagctttccccgactactggtgggagatggactctgtcaatgtgattgcaatcaaggtggccgagtctgatgtgggttaccctatcagggtatttggcactgtgctggccagggatgagtacgatttcaggtgtgtctatttgttcaggcgtgacaggaacaatccacagatcatcacctcgccggaggacacactaactctgacaggacctaatcgagcgctgggtgcaatagacaaaatgtatttcgagttcaatttgaagattagagacggtgatgtcgacaaagatttctgcaaaggtgtgcgagaacacaatgccatctgctatacaaagcagccgatgactttatcgctagagagctgcctgagtagaattgattttgtgtatagtcctgttcaattagctgtggaagcttctgttgcagtcaaaattaagggggttgtatccaagtttttcactggcaaagtgactgcttggactactggagatgatcagaacaaaatcatcctgtatgacagtgaagtggaaggcaggaacagagttcttggagctgatggatcagtcgatctgactcgctgtttcgtagccgtcaatttggatgatgaactggtgctcaatgtctgtgtttctgaaggagctggctcaatctttgagctcgttcttggacacaatgatgaagaatgtgtccttgagcaaggtccctatgaactgcaggtgaatgttgtttggacagctgccttgaagcatcgacagcgcagaaaattgtttgagcgtatcggtgacttccgcgtgttaaggtga
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| Protein seq | MAGCQAGEHASIFGIDKNGDDSDEPCAKDDAKQSDVAPLKEEENWELDSEPELTWDEKVVEVLNIVRRREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKSLAFPDYWWEMDSVNVIAIKVAESDVGYPIRVFGTVLARDEYDFRCVYLFRRDRNNPQIITSPEDTLTLTGPNRALGAIDKMYFEFNLKIRDGDVDKDFCKGVREHNAICYTKQPMTLSLESCLSRIDFVYSPVQLAVEASVAVKIKGVVSKFFTGKVTAWTTGDDQNKIILYDSEVEGRNRVLGADGSVDLTRCFVAVNLDDELVLNVCVSEGAGSIFELVLGHNDEECVLEQGPYELQVNVVWTAALKHRQRRKLFERIGDFRVLR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0002150 | OsLima_08g0002150.02 | Chr08 | 1775436 | 1778453 | + | NAM | ||
| CDS seq | atggcggacgaaagcgagaggggcggtatggtaatcgacgacgtcggcggcggcggactgaatcttgcaattgttgcaggcaagcgtaagcgggagctcacatgggaagagaaggcgttgacagttcttgatattgtcgggtcccaacagcaccccgcatgccaacctgccgagcgtgattgcagcctcatagactcggagaaagattactcatctatggccggctgccaggccggagaacacgctagtatatttggcattgacaagaatggggatgattctgatgaaccgtgtgctaaggatgatgccaagcaaagtgatgtggctcctctgaaggaggaggagaattgggagctggacagtgaaccagagctcacatgggatgagaaggtggttgaagttctaaacatagttcgacgccgagagatcaccgaatataaccccaagcagttttgctcaattcctactcgattttgtgcctacaacatagccttctttgacctggacaaagagtcaaagcttgcacgtggaccacctatcaagtcactagctttccccgactactggtgggagatggactctgtcaatgtgattgcaatcaaggtggccgagtctgatgtgggttaccctatcagggtatttggcactgtgctggccagggatgagtacgatttcaggtgtgtctatttgttcaggcgtgacaggaacaatccacagatcatcacctcgccggaggacacactaactctgacaggacctaatcgagcgctgggtgcaatagacaaaatgtatttcgagttcaatttgaagattagagacggtgatgtcgacaaagatttctgcaaaggtgtgcgagaacacaatgccatctgctatacaaagcagccgatgactttatcgctagagagctgcctgagtagaattgattttgtgtatagtcctgttcaattagctgtggaagcttctgttgcagtcaaaattaagggggttgtatccaagtttttcactggcaaagtgactgcttggactactggagatgatcagaacaaaatcatcctgtatgacagtgaagtggaaggcaggaacagagttcttggagctgatggatcagtcgatctgactcgctgtttcgtagccgtcaatttggatgatgaactggtgctcaatgtctgtgtttctgaaggagctggctcaatctttgagctcgttcttggacacaatgatgaagaatgtgtccttgagcaaggtccctatgaactgcaggtgaatgttgtttggacagctgccttgaagcatcgacagcgcagaaaattgtttgagcgtatcggtgacttccgcgtgttaaggtga
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| Protein seq | MADESERGGMVIDDVGGGGLNLAIVAGKRKRELTWEEKALTVLDIVGSQQHPACQPAERDCSLIDSEKDYSSMAGCQAGEHASIFGIDKNGDDSDEPCAKDDAKQSDVAPLKEEENWELDSEPELTWDEKVVEVLNIVRRREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKSLAFPDYWWEMDSVNVIAIKVAESDVGYPIRVFGTVLARDEYDFRCVYLFRRDRNNPQIITSPEDTLTLTGPNRALGAIDKMYFEFNLKIRDGDVDKDFCKGVREHNAICYTKQPMTLSLESCLSRIDFVYSPVQLAVEASVAVKIKGVVSKFFTGKVTAWTTGDDQNKIILYDSEVEGRNRVLGADGSVDLTRCFVAVNLDDELVLNVCVSEGAGSIFELVLGHNDEECVLEQGPYELQVNVVWTAALKHRQRRKLFERIGDFRVLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 1775506 | 1775703 | + | OsLima_08g0002150.02 | OsLima_08g0002150.02,OsLima_08g0002150.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.064393 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0132600 | RBH | 2.704034 | 2.256823 | 9.574253 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g03840 | RBH | 1.614698 | 1.469862 | 2.164083 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0132600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002250 | RBH | 0.910352 | 13.808192 | 11.097309 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0002300 | RBH | 0.262308 | 1.646870 | 4.328712 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0002300 | RBH | 1.520385 | 9.093184 | 16.778004 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0002270 | RBH | 0.200497 | 0.319648 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002120 | RBH | 9.499740 | 24.940216 | 29.985384 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0027100 | RBH | 13.142644 | 15.3115435 | 17.1913625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0001990 | RBH | 0.380252 | 1.064133 | 1.437814 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0030800 | RBH | 14.9690395 | 15.395989 | 36.8877755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002140 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002140 | RBH | 0.178790 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002180 | RBH | 1.555222 | 1.802102 | 2.567937 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002090 | RBH | 0.467381 | 5.224456 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002110 | RBH | 0.0 | 0.0 | 1.135179 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002040 | RBH | 2.649287 | 16.787926 | 12.748504 |
