Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0132100 | OGI:08004710 | 13/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:1795779-1801269 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGCGTCAAGATGGCGGACGAAAGCGAGAGGGGCGGTATGGTAATCGACGACGTCGGCGGCGGCGGACTGAATCTTGCAATTGTTGCAGGCAAGCGTAAGCGGGAGATCACATGGGAAGAGAAGGCGGCGTTGACAGTTCTTGATATTCCTGCCGAGCGTGATTGCAGCCTCATAGACTCGGAGAAAGATTACTCATGTGAGTGTATATATAATCCACAACTAATCGATCGATCATTCATCATTCATGTACATCTGTTCTGCTTTGTTCACTCGTTTGCATCAGTCAGTATATCCCTCTTAATTGGTACTTCCTCCGTTTTATATTATAAGACTTTCTAGCATTGTATTCATTCATTCATATATATGTTAATGAATCTAAATATATGTATGTGTTTAGATTCATTAATATCTATATGAATATGGGTAATGCTAGAAAGTCTTATAATATGAGACGGAGGCAGTATTTTTTTTTTGTTTGTTGGATGGGAAACATCAAAACCAAAACTTTGCTTGTTTTGCAGCTATGGCTGGCTGCCAGGCCGGAGAACACGCTAGTATATTTGGCATTGACAAGAATGGGGATGATTCTGATGAACCGTGTGCTAAGGATGATGCCAATCAAAGTGATATGGCTGCTCTGAAGGAGGAGGAGGAGAATTGGGAGCTGGACAGTGAACCAGAGCTCACATGGGATGAGAAGGTGGTTCAAGTTCTAAACATGGTTCGACACCGAGAGATCACCGAATATAACCCCAAGCAGTTTTGCTCAATTCCTACTCGATTTTGTGCCTACAACATAGCCTTCTTTGACCTGGACAAAGAGTGTGAGTACATCCATCCACTGTTAGGGTTTTCTATAGGATCGTCTAGCCTTAGATCTAGTCGGGTAGAGCTCTTGGGTGGATGAACAAATATGGATGAAACAACAGAGAGGGAAGTGAGAGGGTTTAGGGATACGACTGGTTGACGTTGAGGAGGAGGAAGAGGCGCCGGCCATCGTCGTTGTTGTCGCGCTTGACGTGGACGGCGGCGACGATGGTCATGACGGCGGCGGTCGTAGGCGAGGACGACGAGGCGTGGCGCGGCGTGATGCTTCCCGTCACTGGCTGCGCCCCCTCGATCAGTTAGGGTTTTGTGGGTGGAGTTGGCGGTGGCAGTGAACCTCGTATCGTGTGCCCCCTCGGCCTCCACCCCTGTTTATATGGCGCAGGGTGACAGGGGCCCACCAGCCAATGGGCTGGGCGCCCCCCGATCAGGGCACGGGTCAAGGTCCCTTTGTGCCGTTGGGCTCAAGGGGAGGGAGATCTATCTAACATTCTCCCCCTTGATCTCACTATTTCTTTTAGCCTTTTTCTATTCCATCACAGATTTGCACATAGAGCATGTTTCATCGTCACGGTTAATCGCCGATGGATTCGACAGCCACTATACACATCTCTATTATACTTTAACTTTTGGGCCCTGTAGTCCAGGATTCATAAGGCTTCCCTTAAACCCATGCCGGCTACATGTTCCTTGAACACATTGGGTGGTAGGTCTTTCGTGAGCGGATCCGCGAGCATCCTTTCTGTTCTAATGTGCTCGAGACTGATTGTTTGATCCCGGACTTTGTTCTTCACAACATAGTACTTTATGTCAATGTGTTTGGCAGCACCACTTGACTGATTGTTGTGAGCGTACATTACTGTAGGTTTGTTATCGCGGTATAACTTTAGTACTCTTCCTGTCCATAGCTCATACGGTGTTTTGGGCACCGATTTGCTTGAAACTCTGTTGAGGATATGAATGGCGGTTTTTAACGCCTCCATCCATAAACCCAATGGTAGGGTGGAGTAGCTCATCATGCTGCGCACCATATCCATAAGGGTACGGTTACGCCTTTCAGCTACCCCATTCTGTTTAGGTTCGCCCGGTGTTGAATAGTGGGCTACTATTCCATTCTCTAGCAAGAACCTTGCAAAAGGTCCAGGGACTTGCCCATAAGGCGTATGCCGACCATAGTACTCCCCCCATGGTTAGATCTTACTATTTTAAACTTTATATCATGCTGATTTTCAACTTCAGCTTTGAATATCTTAAATTTATCCAATGCTTCTGATCTTTCTTTAATTGGATAAATATAACCATAATGGGAGTAATCGTCTGTGAATGTTATGAACGAGTCATAGCCATCCACACTTTTCACAGGAAATGGACCACAAATATCTGTATGAATGATCTCCAAAATTCCCGCGCTTCGTTTTGCACCCTTTTTGATGCTCTTTACAAATTTTCCTTTAATGCATTCTATGCATTGTTCTAAATCTGAGAACTCCAATGGAGGAAGAATATCACTCTTAACTAGTCTCTCAATTCTCCCCCTCGAAATATGGCCTAAACGATAGTGCCATAATTTCGATGAGACATCAGGAGTTCTCTTTCTTTTCTTGTTTTCTTTTGTCAACGAGGACACAACATTCACATTCTCAGAAAGAGATAACAAATAAAGCTCATCTTGCAACACAACAAAGAATTGGGCTCAATCCCAGAGTGTGACACCGTCTCTGAGTACCTCGAAAGAATAAAGAGCCAGTTTACTGGTTCTTCAAAGACTTATGCGACACAGCTGATAAAGCAGCTTGTGACAGAGAGGTACCATGGGGGTGGTGTAAGAGACCACATTCTTAGGATGAGCAACATGGCTTCCAAGTTGAAGCCAATGGATTTGGGTATCACAGATGACTTTCTGGTCCATCTGGTTATGGCCTCATTGCCAAAGCATTTTGACAACTTTATTGTCAACTTCAACATAAGTCTAGAGAAATGGAATTTTGAAAAGCTCATCGCTAATTGTGTGCAAGAGGAGGAAAGAATCAAAGAGTCCAATGGTGGCTCTATTAACTATGTTAAAGATAACAAGAAAAAGAGCCACAAACCATCCCCTCAAAAGGGAAATAGCCTCAGCATCTGCCTCAGCAACAACATTTCACTGTTGAAAAGGATCAGTGTCTCCACTGCAAGAAGACATGACATTACAAGAAAGATTGTCCTGACTTCCTGAAAATGATCATGGCAAAGAAAGGTGAGAACATTATTACATTTGTAAATGAATCTCATTATGTTGGTTATTTTAGATCCACATGGTGGATTGATTCTGGAGTAACTATTCATGCGTGTAATTGTTTAAAGGGATTCCGTTCGACGAGGACTACGCAAAGAAACAAAAGATCCATTAGAGTTGCCAATGGAGTTGAAGCAAAAGTAGAAGCTGTTGGAGTCTTTGCCTAGAGCTCCCGATTGGCTTCACACTTTTACTTCGAGATGTTTTTTATGTAATTTAATAAGTGTATCGAAATAGGATTTTGATGGATATGATTGCCATTTTGGAAATGGCAAATGTGAACTATGGTATAATAATGCATGTATTGGTCTTGCTGTGTTGCAAGATGAGCTTTATTTGTTATCTTTTGCTGAGAATGTTAATGTTGTGTCCTCATTGACAAAAGGAAACAAGAAAAGAAAGAGAACTCCTGATGTCTCATCGAAATTATGGCACTGTCGTTTAGGCCATATTTCGAGGGGGAGAATTATGACTAGTTAAGAATGACATTCTTCCTCTATTGGAGTTCTCAGATTTAGAACAATGCATAGAATGCATTAAAGGAAAATTTGTGAGTGGAATTGGCGGCGGCAGCGAACCTCGTATCGTGTGCCGCCCCGGCCTCCACCCCTGTTTATATGGCACGGGGTGACGGGGGCCTACCAGCCAATGGGCTGGGCGCCCTCGATCAGGGCGCGGGTCAAGGTCCCCTTGTGCCGTTGGGCTCAAGGGGGAGAGAGATCTATCAAACATCCATTTGTTATAATATCATCCTTGTTTCTTGTTCATTCTTTGACTATTGTACATGTCTTAAAAAAATTTACTTTCCTGGTTTGATTTATGTCTCTGGCTTGATTTTGCAGCAAAGCTTGCACGTGGACCACCTATCAAGTCGCTAGCTTTCCCTGACTACTGGTGGGAGATGGACTCTGTCAATGTGATTGCAATCAAGGTGGCCGAGTCTGATGTGGGTTACCCTATCAGGGTATTTGGCACTGTGCTGGCCAGGGATGAGTATGATTTCAGGTGTGTCTATCTGTTCAGGCGTGACAGGAACAATCCCCAGATCATCACCTCGCCGGTATGTTACTGATTCGTTCCTCCTCCTTGCTAGATTAATACTATTTACTGTTCAAATCCAAATGCCATTGCCTTTACAATCCGCTGTCTGATATTCTACACTATAAATGACCTGTTAATTAGGCTCACATTGTTAAGTGAAATGTAGACGGTTGCATAGTTCCATAATGGCTGGTGAAACGCCTGATACGATAGAAATCCTGTTTCCTGGACATTAAAATCCCTACTGCCAGATCTTAAACCTTGCTGTCAATATCATATATCCACCGAATCTGATTGCCTGGTAGTCCATTCCTGCTGTCTAAGAGGGTCAGGACAGTTACTGTTGGAACATCAATCAATCCATGACTTCCCCTTTTTTGTGAGATTTGATTTACTTAATTAGTTTCTATATCCCAAGATCCTGGTACTTTTACCTGTTATACTATTTTGTTAATCCAGTGCAACGGTAGTGCTCTGGGATCATGTACGTTTTGTACTGGAAAAAGTGGAAACAAAAGAATTTATATTGGCATGTTGCTCATTTGAACGTGGGAATTTGAAATGCAATTCACAGGCTGTTTCATATACCTAAAATTATTATCTGTATGTATTATGTACCCAAATTTCTCTTAACATATTGTTGGCACTGTCTGAACTGTATTCGACTTATCGAGCCTGGTGTTTTTGGTGGCATTTTTGACATGATTTCCCCTAATCTATTTACAGGAGGACACACTAACTCTGACAGGACCTAATCGAGCGCTGGGTGCAACAGACAAAATGTATTTCGAGTTCAATTTGAAGATTAGAGACGATGGCGATGTCGACAAAGATTTCTGCAAAGGTGTGCGAGAACACAATGCCATCTGCTATACAAAGCAGCCGATGACTTTATCGCTAGAGAGCTGCCTGAGTACAATTGATTTTGTGTATAGTCCTGTTCAATTAGCTGTGGAAGCTTCTGTTGCAGTCAAAATTAAGGGGGTTGTATCCACGTTTTTCACTGGCAAAGTGACTGCTTGGACTACTGGAGATGATCAGAACAAAATCATCCTGTATGACAGTGAAGTGGAAGGCAGCAACAGAGTTGTTGGAGCTGATGGATCAGTCGATCTGACTCGCTGTTTCGTAGCCGTCAATTTGGATGATGAACTGGTGCTCAATGTCTGTGTTTCTGAAGGAGCTGGCTCAATCTTTGAGCTCGTTCTTGGACACAATGATGAAGAATGTGTCCGTGAGCAAGGTCCCTATGAACTGCAGGTGAATGTTGTTTGGACAGCTGCCTTTAAGCATCGACAGCGCAGAAAATTGTTTGAGCGTATCGGTGACTTCCGCGTGTTAAGGTGA
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| CDS seq | ATGAGCGTCAAGATGGCGGACGAAAGCGAGAGGGGCGGTATGGTAATCGACGACGTCGGCGGCGGCGGACTGAATCTTGCAATTGTTGCAGGCAAGCGTAAGCGGGAGATCACATGGGAAGAGAAGGCGGCGTTGACAGTTCTTGATATTCCTGCCGAGCGTGATTGCAGCCTCATAGACTCGGAGAAAGATTACTCATCTATGGCTGGCTGCCAGGCCGGAGAACACGCTAGTATATTTGGCATTGACAAGAATGGGGATGATTCTGATGAACCGTGTGCTAAGGATGATGCCAATCAAAGTGATATGGCTGCTCTGAAGGAGGAGGAGGAGAATTGGGAGCTGGACAGTGAACCAGAGCTCACATGGGATGAGAAGGTGGTTCAAGTTCTAAACATGGTTCGACACCGAGAGATCACCGAATATAACCCCAAGCAGTTTTGCTCAATTCCTACTCGATTTTGTGCCTACAACATAGCCTTCTTTGACCTGGACAAAGAGTCAAAGCTTGCACGTGGACCACCTATCAAGTCGCTAGCTTTCCCTGACTACTGGTGGGAGATGGACTCTGTCAATGTGATTGCAATCAAGGTGGCCGAGTCTGATGTGGGTTACCCTATCAGGGTATTTGGCACTGTGCTGGCCAGGGATGAGTATGATTTCAGGTGTGTCTATCTGTTCAGGCGTGACAGGAACAATCCCCAGATCATCACCTCGCCGGAGGACACACTAACTCTGACAGGACCTAATCGAGCGCTGGGTGCAACAGACAAAATGTATTTCGAGTTCAATTTGAAGATTAGAGACGATGGCGATGTCGACAAAGATTTCTGCAAAGGTGTGCGAGAACACAATGCCATCTGCTATACAAAGCAGCCGATGACTTTATCGCTAGAGAGCTGCCTGAGTACAATTGATTTTGTGTATAGTCCTGTTCAATTAGCTGTGGAAGCTTCTGTTGCAGTCAAAATTAAGGGGGTTGTATCCACGTTTTTCACTGGCAAAGTGACTGCTTGGACTACTGGAGATGATCAGAACAAAATCATCCTGTATGACAGTGAAGTGGAAGGCAGCAACAGAGTTGTTGGAGCTGATGGATCAGTCGATCTGACTCGCTGTTTCGTAGCCGTCAATTTGGATGATGAACTGGTGCTCAATGTCTGTGTTTCTGAAGGAGCTGGCTCAATCTTTGAGCTCGTTCTTGGACACAATGATGAAGAATGTGTCCGTGAGCAAGGTCCCTATGAACTGCAGGTGAATGTTGTTTGGACAGCTGCCTTTAAGCATCGACAGCGCAGAAAATTGTTTGAGCGTATCGGTGACTTCCGCGTGTTAAGGTGA
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| Protein seq | MSVKMADESERGGMVIDDVGGGGLNLAIVAGKRKREITWEEKAALTVLDIPAERDCSLIDSEKDYSSMAGCQAGEHASIFGIDKNGDDSDEPCAKDDANQSDMAALKEEEENWELDSEPELTWDEKVVQVLNMVRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKSLAFPDYWWEMDSVNVIAIKVAESDVGYPIRVFGTVLARDEYDFRCVYLFRRDRNNPQIITSPEDTLTLTGPNRALGATDKMYFEFNLKIRDDGDVDKDFCKGVREHNAICYTKQPMTLSLESCLSTIDFVYSPVQLAVEASVAVKIKGVVSTFFTGKVTAWTTGDDQNKIILYDSEVEGSNRVVGADGSVDLTRCFVAVNLDDELVLNVCVSEGAGSIFELVLGHNDEECVREQGPYELQVNVVWTAAFKHRQRRKLFERIGDFRVLR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0132100 | OsNip_08t0132100-00 | Chr08 | 1795779 | 1801269 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGCGTCAAGATGGCGGACGAAAGCGAGAGGGGCGGTATGGTAATCGACGACGTCGGCGGCGGCGGACTGAATCTTGCAATTGTTGCAGGCAAGCGTAAGCGGGAGATCACATGGGAAGAGAAGGCGGCGTTGACAGTTCTTGATATTCCTGCCGAGCGTGATTGCAGCCTCATAGACTCGGAGAAAGATTACTCATCTATGGCTGGCTGCCAGGCCGGAGAACACGCTAGTATATTTGGCATTGACAAGAATGGGGATGATTCTGATGAACCGTGTGCTAAGGATGATGCCAATCAAAGTGATATGGCTGCTCTGAAGGAGGAGGAGGAGAATTGGGAGCTGGACAGTGAACCAGAGCTCACATGGGATGAGAAGGTGGTTCAAGTTCTAAACATGGTTCGACACCGAGAGATCACCGAATATAACCCCAAGCAGTTTTGCTCAATTCCTACTCGATTTTGTGCCTACAACATAGCCTTCTTTGACCTGGACAAAGAGTCAAAGCTTGCACGTGGACCACCTATCAAGTCGCTAGCTTTCCCTGACTACTGGTGGGAGATGGACTCTGTCAATGTGATTGCAATCAAGGTGGCCGAGTCTGATGTGGGTTACCCTATCAGGGTATTTGGCACTGTGCTGGCCAGGGATGAGTATGATTTCAGGTGTGTCTATCTGTTCAGGCGTGACAGGAACAATCCCCAGATCATCACCTCGCCGGAGGACACACTAACTCTGACAGGACCTAATCGAGCGCTGGGTGCAACAGACAAAATGTATTTCGAGTTCAATTTGAAGATTAGAGACGATGGCGATGTCGACAAAGATTTCTGCAAAGGTGTGCGAGAACACAATGCCATCTGCTATACAAAGCAGCCGATGACTTTATCGCTAGAGAGCTGCCTGAGTACAATTGATTTTGTGTATAGTCCTGTTCAATTAGCTGTGGAAGCTTCTGTTGCAGTCAAAATTAAGGGGGTTGTATCCACGTTTTTCACTGGCAAAGTGACTGCTTGGACTACTGGAGATGATCAGAACAAAATCATCCTGTATGACAGTGAAGTGGAAGGCAGCAACAGAGTTGTTGGAGCTGATGGATCAGTCGATCTGACTCGCTGTTTCGTAGCCGTCAATTTGGATGATGAACTGGTGCTCAATGTCTGTGTTTCTGAAGGAGCTGGCTCAATCTTTGAGCTCGTTCTTGGACACAATGATGAAGAATGTGTCCGTGAGCAAGGTCCCTATGAACTGCAGGTGAATGTTGTTTGGACAGCTGCCTTTAAGCATCGACAGCGCAGAAAATTGTTTGAGCGTATCGGTGACTTCCGCGTGTTAAGGTGA
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| Protein seq | MSVKMADESERGGMVIDDVGGGGLNLAIVAGKRKREITWEEKAALTVLDIPAERDCSLIDSEKDYSSMAGCQAGEHASIFGIDKNGDDSDEPCAKDDANQSDMAALKEEEENWELDSEPELTWDEKVVQVLNMVRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKSLAFPDYWWEMDSVNVIAIKVAESDVGYPIRVFGTVLARDEYDFRCVYLFRRDRNNPQIITSPEDTLTLTGPNRALGATDKMYFEFNLKIRDDGDVDKDFCKGVREHNAICYTKQPMTLSLESCLSTIDFVYSPVQLAVEASVAVKIKGVVSTFFTGKVTAWTTGDDQNKIILYDSEVEGSNRVVGADGSVDLTRCFVAVNLDDELVLNVCVSEGAGSIFELVLGHNDEECVREQGPYELQVNVVWTAAFKHRQRRKLFERIGDFRVLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0132600 | RBH | 2.704034 | 2.256823 | 9.574253 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g03790 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0132100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002250 | SBH | 0.910352 | 13.808192 | 11.097309 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0002300 | SBH | 0.262308 | 1.646870 | 4.328712 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0002300 | SBH | 1.520385 | 9.093184 | 16.778004 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0002230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002120 | SBH | 9.499740 | 24.940216 | 29.985384 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0027100 | SBH | 13.142644 | 15.3115435 | 17.1913625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0001990 | SBH | 0.380252 | 1.064133 | 1.437814 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0029500 | RBH | 0.0217135 | 0 | 0.061319 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002150 | SBH | 0.000000 | 0.064393 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002140 | SBH | 0.178790 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002130 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002090 | SBH | 0.467381 | 5.224456 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002110 | RBH | 0.0 | 0.0 | 1.135179 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002040 | SBH | 2.649287 | 16.787926 | 12.748504 |
