Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0007980 | OGI:01011670 | 3/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:7390544-7392348 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacaaccagccatggAaaaaaaaggaacaataagggtacttactatgtgaaacatgaaaatcaggcagcaaacatatacgtgtaggaaaataacctgtgttatttgatggtgagtagtcaatatttggatcaaatgatggaggatcgaagtccagatcagtataagtcctgtgtggaacagtgcgattcaagtcgattgattcttctttcaagttgtgagtatgaaccatcggtgtacaattggcagcagctgcactcacatcttctacatcatttcctaaagatggtgtttggttgacctctattccattctcagcatcatcgttgacagttgtgcatgtataaCctttagaaacatcaacTtcatcgctgattggtatggtcacgctgggcatgttcttcgaagcttctgtcaccttaactagactctctgttgccttatcaaggttgccaatgcaggaaatccaaaaacttttcaattcttgggccttctgtattaattcagcagcatgctgtgttgcatgttgataTtaaaagtttatatctctagatatttactaaataaacatgtttggtagaaatttttttaataacttacctgagactcaatctgaacattttcatttcccccgctgtcagtgacagatgttctttcgcacgttcttttgtagcagacttcatttttgggccgtagctggatcgatataaagtgcaagtatatcagacatgtgaagggttagaacaatataaactatgaattaTttttttgtaaagtacctttaattttccaaactgtgttgcctggtaatagttccTttcgctgatgtccagctgatatctttcctttattgtatcaagatcatataatgcaattcgaggaaaTatattatgctccaagtttagatcacctccaaagtccacgttatccaaataatggacctttgcatgAaaaattttattagtgtactcactatcattatataattataacatttagtgtatgtacTgcattgggaaaaagtctatatacctgcaaATaaatagagcaaccagtgatataaccacatttagtgccatcagcgtgcttcttttgaacagttgccgctgcgtccaatatctcgttcaacacatacccagaccaattgaactttgctatttcattggggtcaagtagtgcagAaaaatatcttggacatttattgtccatatttgattgtggcgcaagaaatttcatcataacaagcattaggaatgctgttttgaaactttctttctcagcctttgacatttgccctctgtggtgtttatctaatacatcctccaatacctccttgttaacgtccttaaaaCtagcaactttcattctttcagcaattaacctcttgacatgagaaacaacctcaacattgggtgcttgcaactcctcccctacgcaaggaatcccaagcaccttcttaacatcctcaggagacagtggcaaaacctcaccactttctagttcgatagccgaacgtgttggggatacccgtgacaaaagccagtggctgaagtcacgatggtttgttatgaggggcatatgcagcagCccctcaaaaCccatctcagctACCcgctctttcTtttcagcactaaatctctgtatgataggtgtgatggaagatggtacacaacgcgaaaccggtgccacgaatttaacacgaacagccttcttccttgtaggtggagtgacaaagtcatcatcatcatgaatggaacgacgcttcacatttcttctcacgctcgcacactttggaagctgcggcat
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| CDS seq | atgccgcagcttccaaagtgtgcgagcgtgagaagaaatgtgaagcgtcgttccattcatgatgatgatgactttgtcactccacctacaaggaagaaggctgttcgtgttaaattcgtggcaccggtttcgcgttgtgtaccatcttccatcacacctatcatacagagatttagtgctgaaaAgaaagagcgGGTagctgagatggGttttgagggGctgctgcatatgcccctcataacaaaccatcgtgacttcagccactggcttttgtcacgggtatccccaacacgttcggctatcgaactagaaagtggtgaggttttgccactgtctcctgaggatgttaagaaggtgcttgggattccttgcgtaggggaggagttgcaagcacccaatgttgaggttgtttctcatgtcaagaggttaattgctgaaagaatgaaagttgctaGttttaaggacgttaacaaggaggtattggaggatgtattagataaacaccacagagggcaaatgtcaaaggctgagaaagaaagtttcaaaacagcattcctaatgcttgttatgatgaaatttcttgcgccacaatcaaatatggacaataaatgtccaagatattttTctgcactacttgaccccaatgaaatagcaaagttcaattggtctgggtatgtgttgaacgagatattggacgcagcggcaactgttcaaaagaagcacgctgatggcactaaatgtggttatatcactggttgctctatttATttgcaggtccattatttggataacgtggactttggaggtgatctaaacttggagcataatatAtttcctcgaattgcattatatgatcttgatacaataaaggaaagatatcagctggacatcagcgaaAggaactattaccaggcaacacagtttggaaaattaaagctacggcccaaaaatgaagtctgctacaaaagaacgtgcgaaagaacatctgtcactgacagcgggggaaatgaaaatgttcagattgagtctcagcatgctgctgaattaatacagaaggcccaagaattgaaaagtttttggatttcctgcattggcaaccttgataaggcaacagagagtctagttaaggtgacagaagcttcgaagaacatgcccagcgtgaccataccaatcagcgatgaAgttgatgtttctaaagGttatacatgcacaactgtcaacgatgatgctgagaatggaatagaggtcaaccaaacaccatctttaggaaatgatgtagaagatgtgagtgcagctgctgccaattgtacaccgatggttcatactcacaacttgaaagaagaatcaatcgacttgaatcgcactgttccacacaggacttatactgatctggacttcgatcctccatcatttgatccaaatattgactactcaccatcaaataacacaggttattttcctacacgtatatgtttgctgcctgattttcatgtttcacatagtaagtacccttattgttcctttttttTccatggctggttgtga
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| Protein seq | MPQLPKCASVRRNVKRRSIHDDDDFVTPPTRKKAVRVKFVAPVSRCVPSSITPIIQRFSAEKKERVAEMGFEGLLHMPLITNHRDFSHWLLSRVSPTRSAIELESGEVLPLSPEDVKKVLGIPCVGEELQAPNVEVVSHVKRLIAERMKVASFKDVNKEVLEDVLDKHHRGQMSKAEKESFKTAFLMLVMMKFLAPQSNMDNKCPRYFSALLDPNEIAKFNWSGYVLNEILDAAATVQKKHADGTKCGYITGCSIYLQVHYLDNVDFGGDLNLEHNIFPRIALYDLDTIKERYQLDISERNYYQATQFGKLKLRPKNEVCYKRTCERTSVTDSGGNENVQIESQHAAELIQKAQELKSFWISCIGNLDKATESLVKVTEASKNMPSVTIPISDEVDVSKGYTCTTVNDDAENGIEVNQTPSLGNDVEDVSAAAANCTPMVHTHNLKEESIDLNRTVPHRTYTDLDFDPPSFDPNIDYSPSNNTGYFPTRICLLPDFHVSHSKYPYCSFFFHGWL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0007980 | OsLaMu_07g0007980.01 | Chr07 | 7390544 | 7392348 | - | NAM | ||
| CDS seq | atgccgcagcttccaaagtgtgcgagcgtgagaagaaatgtgaagcgtcgttccattcatgatgatgatgactttgtcactccacctacaaggaagaaggctgttcgtgttaaattcgtggcaccggtttcgcgttgtgtaccatcttccatcacacctatcatacagagatttagtgctgaaaAgaaagagcgGGTagctgagatggGttttgagggGctgctgcatatgcccctcataacaaaccatcgtgacttcagccactggcttttgtcacgggtatccccaacacgttcggctatcgaactagaaagtggtgaggttttgccactgtctcctgaggatgttaagaaggtgcttgggattccttgcgtaggggaggagttgcaagcacccaatgttgaggttgtttctcatgtcaagaggttaattgctgaaagaatgaaagttgctaGttttaaggacgttaacaaggaggtattggaggatgtattagataaacaccacagagggcaaatgtcaaaggctgagaaagaaagtttcaaaacagcattcctaatgcttgttatgatgaaatttcttgcgccacaatcaaatatggacaataaatgtccaagatattttTctgcactacttgaccccaatgaaatagcaaagttcaattggtctgggtatgtgttgaacgagatattggacgcagcggcaactgttcaaaagaagcacgctgatggcactaaatgtggttatatcactggttgctctatttATttgcaggtccattatttggataacgtggactttggaggtgatctaaacttggagcataatatAtttcctcgaattgcattatatgatcttgatacaataaaggaaagatatcagctggacatcagcgaaAggaactattaccaggcaacacagtttggaaaattaaagctacggcccaaaaatgaagtctgctacaaaagaacgtgcgaaagaacatctgtcactgacagcgggggaaatgaaaatgttcagattgagtctcagcatgctgctgaattaatacagaaggcccaagaattgaaaagtttttggatttcctgcattggcaaccttgataaggcaacagagagtctagttaaggtgacagaagcttcgaagaacatgcccagcgtgaccataccaatcagcgatgaAgttgatgtttctaaagGttatacatgcacaactgtcaacgatgatgctgagaatggaatagaggtcaaccaaacaccatctttaggaaatgatgtagaagatgtgagtgcagctgctgccaattgtacaccgatggttcatactcacaacttgaaagaagaatcaatcgacttgaatcgcactgttccacacaggacttatactgatctggacttcgatcctccatcatttgatccaaatattgactactcaccatcaaataacacaggttattttcctacacgtatatgtttgctgcctgattttcatgtttcacatagtaagtacccttattgttcctttttttTccatggctggttgtga
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| Protein seq | MPQLPKCASVRRNVKRRSIHDDDDFVTPPTRKKAVRVKFVAPVSRCVPSSITPIIQRFSAEKKERVAEMGFEGLLHMPLITNHRDFSHWLLSRVSPTRSAIELESGEVLPLSPEDVKKVLGIPCVGEELQAPNVEVVSHVKRLIAERMKVASFKDVNKEVLEDVLDKHHRGQMSKAEKESFKTAFLMLVMMKFLAPQSNMDNKCPRYFSALLDPNEIAKFNWSGYVLNEILDAAATVQKKHADGTKCGYITGCSIYLQVHYLDNVDFGGDLNLEHNIFPRIALYDLDTIKERYQLDISERNYYQATQFGKLKLRPKNEVCYKRTCERTSVTDSGGNENVQIESQHAAELIQKAQELKSFWISCIGNLDKATESLVKVTEASKNMPSVTIPISDEVDVSKGYTCTTVNDDAENGIEVNQTPSLGNDVEDVSAAAANCTPMVHTHNLKEESIDLNRTVPHRTYTDLDFDPPSFDPNIDYSPSNNTGYFPTRICLLPDFHVSHSKYPYCSFFFHGWL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0152500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g12990 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0152500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0016040 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008140 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010050 | SBH | 0.0 | 0.0 | 3.303881 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003460 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0015910 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0016390 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0123400 | SBH | 4.760941 | 6.851253 | 20.1962755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0015660 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015830 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0015830 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015830 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0007860 | RBH | 0.0 | 0.0 | 0.0 |
