Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsCMeo_07g0010050 | OGI:07029510 | 4/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:10565737-10566322 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | aaagcacttgtttagggtttcatcgggtactcaaatttctgttcaacaattacaagtgcatttgaaggaggtaacacggataacaagttcatcacagcttttatgttgattactctgtgcaagatcattgccccaacaacatcaaaccaacctagtatgcaatatgccaatgtttgcttggatgttaacaacattgcaaagtacaattgggctgaggacatgctttcaactataagaaatgcagtgctgcaggtgcaggacaagattgagaagaaagaaaatattgattggatttcagcatccacatattttcttggggtacatatctacatgcttaatctctcctttacgccttctttttagtactgtaacatctcactgcttctttcccctaaaaatgcagctactatatttagattatatagatgcatctggatgtaatgtgccatggggagagcctagggtggcattttggacagatcaagcagcaaaaccattgaaaaatgctgatatgggatctgggctttatgcagtttatggatcatgcaaggtaattcgaccactccttcaatgtcatctcatctaa
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CDS seq | atgttgattactctgtgcaagatcattgccccaacaacatcaaaccaacctagtatgcaatatgccaatgtttgcttggatgttaacaacattgcaaagtacaattgggctgaggacatgctttcaactataagaaatgcagtgctgcaggtgcaggacaagattgagaagaaagaaaatattgattggatttcagcatccacatattttcttgggctactatatttagattatatagatgcatctggatgtaatgtgccatggggagagcctagggtggcattttggacagatcaagcagcaaaaccattgaaaaatgctgatatgggatctgggctttatgcagtttatggatcatgcaaggtaattcgaccactccttcaatgtcatctcatctaa |
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Protein seq | MLITLCKIIAPTTSNQPSMQYANVCLDVNNIAKYNWAEDMLSTIRNAVLQVQDKIEKKENIDWISASTYFLGLLYLDYIDASGCNVPWGEPRVAFWTDQAAKPLKNADMGSGLYAVYGSCKVIRPLLQCHLI |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsCMeo_07g0010050 | OsCMeo_07g0010050.01 | Chr07 | 10565737 | 10566322 | + | NAM | ||
CDS seq | atgttgattactctgtgcaagatcattgccccaacaacatcaaaccaacctagtatgcaatatgccaatgtttgcttggatgttaacaacattgcaaagtacaattgggctgaggacatgctttcaactataagaaatgcagtgctgcaggtgcaggacaagattgagaagaaagaaaatattgattggatttcagcatccacatattttcttgggctactatatttagattatatagatgcatctggatgtaatgtgccatggggagagcctagggtggcattttggacagatcaagcagcaaaaccattgaaaaatgctgatatgggatctgggctttatgcagtttatggatcatgcaaggtaattcgaccactccttcaatgtcatctcatctaa
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Protein seq | MLITLCKIIAPTTSNQPSMQYANVCLDVNNIAKYNWAEDMLSTIRNAVLQVQDKIEKKENIDWISASTYFLGLLYLDYIDASGCNVPWGEPRVAFWTDQAAKPLKNADMGSGLYAVYGSCKVIRPLLQCHLI |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 3.303881 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g17260 | RBH | 0.164472 | 0.261597 | 0.119422 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017730 | SBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008240 | SBH | 0.137021 | 1.265301 | 0.278596 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017490 | SBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0008020 | SBH | 7.699109 | 16.277096 | 6.997818 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0008510 | SBH | 0.717370 | 0.300457 | 0.382679 |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0008000 | SBH | 0.303114 | 0.130553 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0008000 | SBH | 1.519894 | 13.962718 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0008000 | SBH | 26.788910 | 22.687967 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017750 | SBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017530 | SBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |