Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0022750 | OGI:05067900 | 14/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:25866851-25868014 | ||||||||
| Gene Symbol | RPL38, OsRPL38 | ||||||||||
| DNA seq | atggtaagagcttctcctcctcctacttcagccgcatctacattgttattcttgtaggccaaagttattagatctccttttagttcgtgtagttttattagcttggagtagatctagcaagtttgaGtagtttaaaatgtcaccagagTtgatgatttcgtgaGaaatacaatggattcagttgaggatttgaagataaattctcaatagatGtttgatagtatgatgttatgttAaacgtagcagcttcacatcgttttttttttttgtactgatgtgatagtagtatAtTTGAtgatattgcattccggaagtgaaatcatggcacgctggttAaatagcctaatttatttccaatactatgattagctgcaagtttgggtctcttattccttttattttcatatagccgaagcaaatccAtgagatcaaggacttccttctcacagcgAggaggaaGgatgcccgctccgtgaggatcaagaggagcaaggatgccgtcaagttcaaggtgcgctgctccaggtacctctaCacgctgtgtgtacatgacactgacaaggccaacaagctgaagcagtctctccccccaggtatgcagacgggttcaacccagtctgatctggaatcatttcttttgtttctaaatgtctccattgtatggtttaaatctggatggaacgagatgcaagtctactacAaattcagtgaagatgtttacctagacattttAtatatagcatggcataggctgtgaaagcagttatcattcctacAaatattgtagaagaaaaaaactGttatggaatagaacatcctgaccttttttcagtgttgtagtgcaattcaatttgttttcttgtaacacttgtaaaatccagattgcactaatatatctgcgcttttcttccctatgattacattagatcagattagatatgctgtttcaagcagaaatccaaatgtaacatgcttttttggacaccatttgagctagatatccatgccctcgagtagataacattactgttagctaaaatcttgcttgtgtctttttccttatgtgcattattactacatttagctcgactgtatctctggaacttttcagagaactgAaatatgcttgtatctcttgcaggcttgaccgttcaggaggttTaa
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| CDS seq | atgccgaagcaaatccAtgagatcaaggacttccttctcacagcgAggaggaaGgatgcccgctccgtgaggatcaagaggagcaaggatgccgtcaagttcaaggtgcgctgctccaggtacctctaCacgctgtgtgtacatgacactgacaaggccaacaagctgaagcagtctctccccccaggcttgaccgttcaggaggttTaa |
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| Protein seq | MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSLPPGLTVQEV |
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| Function | 60S ribosomal protein L38 [UniProtKB/Swiss-Prot:O22860] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0022750 | OsLaMu_05g0022750.01 | Chr05 | 25866851 | 25868014 | + | NAM | ||
| CDS seq | atgccgaagcaaatccAtgagatcaaggacttccttctcacagcgAggaggaaGgatgcccgctccgtgaggatcaagaggagcaaggatgccgtcaagttcaaggtgcgctgctccaggtacctctaCacgctgtgtgtacatgacactgacaaggccaacaagctgaagcagtctctccccccaggcttgaccgttcaggaggttTaa
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| Protein seq | MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSLPPGLTVQEV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0546700 | SBH | 19.454947 | 22.223831 | 65.421898 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g24610 | SBH | 2.230196 | 1.533693 | 1.739345 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0546700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018640 | SBH | 8.064957 | 61.063995 | 42.282913 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018560 | SBH | 1.019424 | 13.194246 | 13.989331 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018500 | SBH | 9.178200 | 108.861893 | 44.693260 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018400 | SBH | 1.551882 | 8.304168 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018490 | SBH | 55.762119 | 295.667480 | 131.856491 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0210400 | SBH | 17.7435355 | 27.7384685 | 18.43489 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0022470 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0366300 | SBH | 62.853041 | 98.9708025 | 160.976082 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0022660 | SBH | 0.905375 | 0.497405 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022560 | SBH | 0.606038 | 4.508199 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0022710 | RBH | 0.0 | 27.280098 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022750 | SBH | 1.095359 | 3.163542 | 0.679148 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018380 | RBH | 1.140322 | 82.925407 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022180 | SBH | 0.600430 | 5.712099 | 0.809596 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022590 | RBH | 0.0 | 18.515463 | 0.919104 |
