Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0546700 | OGI:07060900 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:21672642-21674132 | ||||||||
| Gene Symbol | RPL38, OsRPL38 | ||||||||||
| DNA seq | AGAGAGAAATGGAGCAAAATTCAGTGTGTTTAGGGACAGTACGACTGGTAGCTATCTCCAGAAAGGAGTAACAGCGCAATCTGACTCGAAGAAGGTTCAGCACATAAACTTTGGGTGTTACATTCAAAACTCAAGACAGATAAAATTTCAGCATCTAATAGCTACTAATGCGAACGGGAGCAAGCAATCCTGCTGCTACAAACAGCATGGTCTGGCTTTGATGCTTAAACCTCCTGGACAGTCAAACCTGAAGAAAGAAATTCACAATCATTGAGTTAGCAATGATGATCAATTGAACAAAAAGAAATTTTGTACTGAATGAACAGCAGAACAGTAATGCATAGATACATAGTGCAAAACGTGTATAATTTCTGGATGAACAGCTTATGGTCCAAGGATATCTGGAAGGCATGAAATTAGCTGGTCTTGTAGGCTGCATCATTTTTTTGAAAAATATACAAAACCTTAGTTGGTGCTGGCTTTGTCTGCTGGACCAGATAGACAAGTATGATGTACTTGATTAGTAGGTTGTTTTGTAGCATATTTGATCTGAAATAGAACAGGTATGCCCAGTGCTGTAATTACTTTTGCTGGTTTTCCAAAGACGAGGTAAATGATATTTTCTGCTCTGCCAAAAAATTGTCATATCTATGGCTCTGAGATAGGCAAGTTACTTATGCGCCTTGACATTTATACTGACATCAATACATGGAAATGACAATTAAAAGCTATACAAAGAGGAAGATGATTGCAACTGCGCAATCTCATCCCAGGAGAAGTTCCAGACTTGCACATATCCTACAGTAAGATTTCCATGACTATCTTGGGAGGCACTAATTGGGTATCATTGCACACAATGCAATTTCCAGACTAAATGGAAGGCCAATTTATCAACAGCTCCACCTGATTAGCATGCTAGACCAAACTAAATTCACAAAGAACATGCATAACCATTCCATACCACATTCTTTTTAAATCCTAAAGCATGAAAGGATTTAACGATTCGTTCCAACAAAACACGTGATTTCGCACACAGCAGCGGACGTTTCCTTACTTAAGAACAGCATCAATAAAAATGAAAGGAAGAGAATACACAGGCAGTGGATAACGGAATACGGACCCGGGGGAAGCGACTGCTTGAGCTTGTTGGCCTTGTCGGCGTCGAAGACGCAGAGGGTGTAGAGGTACTTGGAGCAGCGCACCTTGAACTTGACGGCGTCCTTGGTCCTCTTGATCCGCACCGACCTCGCGTCCTTCCTCCTCGCCGTCAGGAGGAAGTCCTTGATCTCGTGGATCTGCTTCGGCTGCGTTGCCAAGGTAGCAACAACACAAACCAAAACAACAACGGGGTCAATCGCACCGCACCGCGCATCCGCCGCTAGCCCAGGCGTAGCCATCGCCGCGGGGAAGAGAGGAGAGGAGAAGAACTCACCATGGTGGAAGGCGCTGCTGCTCGCTGCCGAAGAGAGTTGAGTTGAGGAGGCTGCGGCG
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| CDS seq | ATGCCGAAGCAGATCCACGAGATCAAGGACTTCCTCCTGACGGCGAGGAGGAAGGACGCGAGGTCGGTGCGGATCAAGAGGACCAAGGACGCCGTCAAGTTCAAGGTGCGCTGCTCCAAGTACCTCTACACCCTCTGCGTCTTCGACGCCGACAAGGCCAACAAGCTCAAGCAGTCGCTTCCCCCGGGTTTGACTGTCCAGGAGGTTTAA |
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| Protein seq | MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGLTVQEV |
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| Function | 60S ribosomal protein L38 [UniProtKB/Swiss-Prot:O22860] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0546700 | OsNip_07t0546700-01 | Chr07 | 21672642 | 21674132 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCGAAGCAGATCCACGAGATCAAGGACTTCCTCCTGACGGCGAGGAGGAAGGACGCGAGGTCGGTGCGGATCAAGAGGACCAAGGACGCCGTCAAGTTCAAGGTGCGCTGCTCCAAGTACCTCTACACCCTCTGCGTCTTCGACGCCGACAAGGCCAACAAGCTCAAGCAGTCGCTTCCCCCGGGTTTGACTGTCCAGGAGGTTTAA
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| Protein seq | MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGLTVQEV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 19.454947 | 22.223831 | 65.421898 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0433900 | RBH | 13.327335 | 15.762337 | 29.186968 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g24610 | SBH | 2.230196 | 1.533693 | 1.739345 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0546700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018640 | RBH | 8.064957 | 61.063995 | 42.282913 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018560 | RBH | 1.019424 | 13.194246 | 13.989331 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018500 | RBH | 9.178200 | 108.861893 | 44.693260 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018400 | RBH | 1.551882 | 8.304168 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018490 | RBH | 55.762119 | 295.667480 | 131.856491 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0354200 | RBH | 28.180032 | 26.557579 | 26.3529095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018990 | RBH | 3.360038 | 10.878016 | 6.978185 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0366300 | RBH | 62.853041 | 98.9708025 | 160.976082 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0018270 | RBH | 1.806437 | 2.290336 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0018420 | RBH | 3.523372 | 257.929352 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0018270 | RBH | 8.265721 | 214.139053 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018580 | RBH | 4.717513 | 18.918539 | 10.989018 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018380 | RBH | 1.140322 | 82.925407 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G018250 | RBH | 4.071146 | 82.124451 | 22.132771 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018360 | RBH | 10.807672 | 144.258469 | 73.067352 |
