Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0022590 | OGI:05067900 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:25850155-25852494 | ||||||||
| Gene Symbol | RPL38, OsRPL38 | ||||||||||
| DNA seq | atcccactctctctcacccaacgaattccctcgcaaatccgtccaagttcatcgacacaaagaagctcgagctcgagctcgctgtgcttgcggctgcaatggcgggggtgcacacgcgcagggcgttcctgctctgcaactacctcctcctcggcgcctcctccggctgcatcttcctcacgctctccctccgcctcctcccgtccccgtgcggcctcctcctcgtcttcctccacgccctcaccgccgtcctcgccgccgcggcctgctcgggctccttcaccaccgcgcacgcggcgcacaccgcgtccgccgtcctcaccgccatcttccagggcgccgccgcgctgctcgccttcacccgcaccggcgacttcctcgccgagctgcggtcctacgtccgggaggaggacggcgaggtgatcctcgagctcgtcggcgggctcggcgctgccatcttcgtcctcgagtgggccgcgctcgccctcgcgttcgcgctccgcctcggcgacgacggcgccgacggcgacgaacacgacggcgggtacgccaagagctggcaatcaggttaccatgtctgatccatcgagactgatgaacagagaagcataagagaggaattcttcgattcttcttttttctttgtgtttatttactgaattcgtgcggctattcagctgtgattacagtgttgctgcaaTtttttttactgctctgttcttggcttcttgaactaaagaagtgcaaggcaaatgtattgctttgctgtgtagtattcgttttcctttaccggatctggtataaattagaggaaatcttgtcatccgcttgaatgaaatttgtcaaatttctcgtaaacaacctttgcgggcaatgttggtatgatttctcaatagaaattttgtcattcaaccaaggaaatttcttgttaccatccttgttagtgaacaaccaactttaaaagtttaaagtggaggaaatttataattcacttgaatgaaatttgtaaaaagaagtgcggtttgggccgttcgtccattagttgagtacgtgggctcggcccatgaaactgctccccatcggctcctacaaaaatccacctcctcgccgccgccgcccttccattgctaggatttacagctgcagagcaggtcgcctcctcccctcgccgccatggtaagagcttctcctcctcctacttcagccgcatctacattgttattcttgtaggccaaagttattagatctccttttagttcgtgtagttttattagcttggagtagatctagcaagtttgagtactttaaaatgtcaccagagttgatgatttcgtgagaaatacaatggattcagttgaggatttgaagataaattctcaatagatgtttgatagtatgatgttatgttaaacgtagcagcttcacatcgtttttttttttttttgtactgatgtgatagtagtatatttgatgatattgcattcctgaagtgaaatcatggcacgctggttaaatagcctaatttatttccaatactatgattagctgcaagtttgggtctcttattccttttattttcatatagccgaagcaaatccatgagatcaaggacttccttctcacagcgaggaggaaggatgcccgctccgtgaggatcaagaggagcaaggatgccgtcaagttcaaggtgcgctgctccaggtacctctgcacgctgtgtgtacatgacactgacaaggccaacaagctgaagcagtctctCcccccaggtatgcagacgggttcaacccagtctgatctggaatcatttcttttgtttctaaatgtctccattgtatggtttaaatctggatggaacgagatgcaagtctactacaaattcagtgaagatgtttacctagacattttatatatagcatggcataggctgtgaaagcagttatcattcctacaaatattgtagaagaaaaaaactgttatggaatagaacatcctgaccttttttcagtgttgtagtgcaattcaatttgttttcttgtaacacttgtaaaatccagattgcactaatatatctgcgcttttcttccctatgattacattagattagattagatatgctgtttcaagcagaaatccaaatgtaacatgcttttttggacaccatttgagctagatatccatgccctcgagtagataacattactgttagctaaaatcttgcttgtgtcTttttccttatgtgcattattactacatttagctcgactgtatctctggaacttttcagagaactgaaatatgcttgtatctcttgcaggcttgaccgttcaggaggtttaa
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| CDS seq | atggcgggggtgcacacgcgcagggcgttcctgctctgcaactacctcctcctcggcgcctcctccggctgcatcttcctcacgctctccctccgcctcctcccgtccccgtgcggcctcctcctcgtcttcctccacgccctcaccgccgtcctcgccgccgcggcctgctcgggctccttcaccaccgcgcacgcggcgcacaccgcgtccgccgtcctcaccgccatcttccagggcgccgccgcgctgctcgccttcacccgcaccggcgacttcctcgccgagctgcggtcctacgtccgggaggaggacggcgaggtgatcctcgagctcgtcggcgggctcggcgctgccatcttcgtcctcgagtgggccgcgctcgccctcgcgttcgcgctccgcctcggcgacgacggcgccgacggcgacgaacacgacggcgggtacgccaagagctggcaatcagagcaggtcgcctcctcccctcgccgccatggtaagagcttctcctcctcctacttcagccgcatctacattccgaagcaaatccatgagatcaaggacttccttctcacagcgaggaggaaggatgcccgctccgtgaggatcaagaggagcaaggatgccgtcaagttcaaggtgcgctgctccaggtacctctgcacgctgtgtgtacatgacactgacaaggccaacaagctgaagcagtctctCcccccaggcttgaccgttcaggaggtttaa
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| Protein seq | MAGVHTRRAFLLCNYLLLGASSGCIFLTLSLRLLPSPCGLLLVFLHALTAVLAAAACSGSFTTAHAAHTASAVLTAIFQGAAALLAFTRTGDFLAELRSYVREEDGEVILELVGGLGAAIFVLEWAALALAFALRLGDDGADGDEHDGGYAKSWQSEQVASSPRRHGKSFSSSYFSRIYIPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLCTLCVHDTDKANKLKQSLPPGLTVQEV |
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| Function | 60S ribosomal protein L38 [UniProtKB/Swiss-Prot:O22860] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0022590 | OsNaBo_05g0022590.01 | Chr05 | 25850253 | 25852494 | + | NAM | ||
| CDS seq | atggcgggggtgcacacgcgcagggcgttcctgctctgcaactacctcctcctcggcgcctcctccggctgcatcttcctcacgctctccctccgcctcctcccgtccccgtgcggcctcctcctcgtcttcctccacgccctcaccgccgtcctcgccgccgcggcctgctcgggctccttcaccaccgcgcacgcggcgcacaccgcgtccgccgtcctcaccgccatcttccagggcgccgccgcgctgctcgccttcacccgcaccggcgacttcctcgccgagctgcggtcctacgtccgggaggaggacggcgaggtgatcctcgagctcgtcggcgggctcggcgctgccatcttcgtcctcgagtgggccgcgctcgccctcgcgttcgcgctccgcctcggcgacgacggcgccgacggcgacgaacacgacggcgggtacgccaagagctggcaatcagagcaggtcgcctcctcccctcgccgccatggtaagagcttctcctcctcctacttcagccgcatctacattccgaagcaaatccatgagatcaaggacttccttctcacagcgaggaggaaggatgcccgctccgtgaggatcaagaggagcaaggatgccgtcaagttcaaggtgcgctgctccaggtacctctgcacgctgtgtgtacatgacactgacaaggccaacaagctgaagcagtctctCcccccaggcttgaccgttcaggaggtttaa
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| Protein seq | MAGVHTRRAFLLCNYLLLGASSGCIFLTLSLRLLPSPCGLLLVFLHALTAVLAAAACSGSFTTAHAAHTASAVLTAIFQGAAALLAFTRTGDFLAELRSYVREEDGEVILELVGGLGAAIFVLEWAALALAFALRLGDDGADGDEHDGGYAKSWQSEQVASSPRRHGKSFSSSYFSRIYIPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLCTLCVHDTDKANKLKQSLPPGLTVQEV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0022590 | OsNaBo_05g0022590.02 | Chr05 | 25850155 | 25851008 | + | IsoSeq | ||
| CDS seq | atcccactctctctcacccaacgaattccctcgcaaatccgtccaagttcatcgacacaaagaagctcgagctcgagctcgctgtgcttgcggctgcaatggcgggggtgcacacgcgcagggcgttcctgctctgcaactacctcctcctcggcgcctcctccggctgcatcttcctcacgctctccctccgcctcctcccgtccccgtgcggcctcctcctcgtcttcctccacgccctcaccgccgtcctcgccgccgcggcctgctcgggctccttcaccaccgcgcacgcggcgcacaccgcgtccgccgtcctcaccgccatcttccagggcgccgccgcgctgctcgccttcacccgcaccggcgacttcctcgccgagctgcggtcctacgtccgggaggaggacggcg
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| Protein seq | IPLSLTQRIPSQIRPSSSTQRSSSSSSLCLRLQWRGCTRAGRSCSATTSSSAPPPAASSSRSPSASSRPRAASSSSSSTPSPPSSPPRPARAPSPPRTRRTPRPPSSPPSSRAPPRCSPSPAPATSSPSCGPTSGRRTA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 18.515463 | 0.919104 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0507000 | RBH | 0.0 | 0.0 | 1.434416 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g43140 | RBH | 0.0 | 0.0 | 0.304775 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0507000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0022920 | RBH | 0.0 | 14.318187 | 0.289587 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0022860 | RBH | 0.0 | 3.197079 | 0.909702 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0022810 | RBH | 0.0 | 10.861096 | 0.656843 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0022800 | RBH | 0.0 | 1.038992 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0022870 | RBH | 0.0 | 20.531458 | 1.118068 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0022470 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0366300 | SBH | 62.853041 | 98.9708025 | 160.976082 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0022660 | SBH | 0.905375 | 0.497405 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022560 | SBH | 0.606038 | 4.508199 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0022710 | RBH | 0.0 | 27.280098 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022750 | SBH | 1.095359 | 3.163542 | 0.679148 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0022750 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022180 | SBH | 0.600430 | 5.712099 | 0.809596 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018360 | RBH | 10.807672 | 144.258469 | 73.067352 |
