Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_04g0004070 OGI:04021970 | 16/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr04:6516485-6519057
Gene Symbol -
DNA seq

tcagcgctcgtttctgctttatgtcttcctcgtacctttttgtttccaaaatctggtcctccaaatgtctgaattcttgcagcattttctgccctaattgctgctgcatcgtctgttctcgccgttcgagttgttttaggtcctcttccatgctccgcagggtctcgttttcttcctggtactggcgcttgtacacttcacgcggcattatacttgattctagctcccgtaagcgttcttttttctggtctacctgcttctgtaggtcatgtactttctgtttcgtctccttgtgtatttcctccagctctttcactttaagagtgagttcttgctgctcctttacaagcttctcgacgggtgatttgtcctgtgtgtgcgatggtagcttcctgatcaggtgttcttgtccctcctctgcattcctctcgacgtggtcgcgttccacttgttcgttcctcagcttctccatttcccggagctgcaggcgaatcggcgccatccggtaagcgataatgccccgttggcgcagggtgtcgaagaacctgtcaggattccacacggcgatgtagacgctgatggcgtcgatgtagttgtagttgccgccccggccgctgaagccgacaatggaccccgctttctccatgggcacctcgaactgccgccattgctcgttgtccaaagtgttcgcgccgtacggtcccaatgtcctgtcacggttggtcctgaactccagcctccggatgagcttgctgtcatggtagccgctgatgtgcgttaacacctcaccggggaagtcgagctcctgcgtgcaatcgacatatcaaacacaacggtgatcagtcgtgataacagccaatcaatactccttttgaaaagctaatagtggtggtagtgaacagtgctggaaatttcggtcccctccgatacgatattactttagccgaaattttaattttttcacgaattttggtaatatttgttccaattcaactaaattttgttcaaaattttggaaatttcggaccgaaatttctgaaatttcagaatgtcggtgacctccgatcaaaacgggttaaccgacagagtgaaccctgatagtgaatggtgaatctggcaccatccaccaccaaattctcaccattctgaaaagagaaaaagattgtgggaaaggggaagggggtgtggaggcccacatgtcagtataaatatatgtagaaattaagaactactgttatttttttaattaaaatcctgttgcaacttacaaacaatatgctataaccatatatatattatactctcttcgtcccataatataagtgattttggagggatgtgacacttcccaggaccacgaatctaattagagagcatccctctcttatattatcttacattataggacggagggacgcgttggttgctttctttttcgtttattgcggggagcgttggtccgatcgctctgaattgaatgcgtctgtcatttccgagactcaaccaatatggtagcgcatgcatgcccgttttttttctcgtcaaataataaatcagccatcccaaagaacagatttgatttaaaagctaaaatatttgctataaggcactctagttttatggattttgttatacgacaatctagtagtattataattatttgacaaaagacactgcccactgttgtgatatgtcatcttccaaacgcagacataaatgtttgcaaagtacgatattacccttgtccaccttttgggtaactcaaatttgaacgagttttaggtaattgtaagcattttgcaaaatttaaaagtgacccaaattatgaaaatcaaaattattatattaaaggttgtttaaattcgaacaacattattttaattttttatttttttgaaaaacatgaatgtgtttgctttacgtaatgtcagaccagttttcaagattgcaaaacatctttaattcaaaacatgttcaaatttaaattttggaccaattctatctctcttttggaagggggattttttatctctccttgaccgttgctttataaaattttgtaaagtattatcggcagtgagtgtttctctataaagaaccataaagcgcagtagagaacatgccacatgtacatttagaatgtcctggattagtttttgctaattctttacacctatatatgcaatccatctgtacctataccaattcaatctcatactgatctagaaaagaaaaatctaacaattcaacaatccatgttacaactaagggaatgaacaatgcacctacgtattcagtcaaaaaaaaaaaaaaacaatgcacctacgtagcggaatggtctcaagtcaccacgtaggcggactgctttttttggaggtgagagagcatgggaaaaagggtttccatcaggctccttgtaacttctgctgtgtacactgttcccttgtcacaaaaagaacaaggaaaggcttggagtcattaaaaaaaacatgtgaaaaggctagggtactcatcgggtaccatgtcacttgccacacattgtcgccctctgccaccatcttctccgccaccat

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CDS seq

atggtggcggagaagatggtggcagagggcgacaatgagctcgacttccccggtgaggtgttaacgcacatcagcggctaccatgacagcaagctcatccggaggctggagttcaggaccaaccgtgacaggacattgggaccgtacggcgcgaacactttggacaacgagcaatggcggcagttcgaggtgcccatggagaaagcggggtccattgtcggcttcagcggccggggcggcaactacaactacatcgacgccatcagcgtctacatcgccgtgtggaatcctgacaggttcttcgacaccctgcgccaacggggcattatcgcttaccggatggcgccgattcgcctgcagctccgggaaatggagaagctgaggaacgaacaagtggaacgcgaccacgtcgagaggaatgcagaggagggacaagaacacctgatcaggaagctaccatcgcacacacaggacaaatcacccgtcgagaagcttgtaaaggagcagcaagaactcactcttaaagtgaaagagctggaggaaatacacaaggagacgaaacagaaagtacatgacctacagaagcaggtagaccagaaaaaagaacgcttacgggagctagaatcaagtataatgccgcgtgaagtgtacaagcgccagtaccaggaagaaaacgagaccctgcggagcatggaagaggacctaaaacaactcgaacggcgagaacagacgatgcagcagcaattagggcagaaaatgctgcaagaattcagacatttggaggaccagattttggaaacaaaaagaaacgagcgctga

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Protein seq

MVAEKMVAEGDNELDFPGEVLTHISGYHDSKLIRRLEFRTNRDRTLGPYGANTLDNEQWRQFEVPMEKAGSIVGFSGRGGNYNYIDAISVYIAVWNPDRFFDTLRQRGIIAYRMAPIRLQLREMEKLRNEQVERDHVERNAEEGQEHLIRKLPSHTQDKSPVEKLVKEQQELTLKVKELEEIHKETKQKVHDLQKQVDQKKERLRELESSIMPREVYKRQYQEENETLRSMEEDLKQLERREQTMQQQLGQKMLQEFRHLEDQILETKRNER

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_04g0004070 OsLaMu_04g0004070.01 Chr04 6516485 6519057 - NAM
CDS seq

atggtggcggagaagatggtggcagagggcgacaatgagctcgacttccccggtgaggtgttaacgcacatcagcggctaccatgacagcaagctcatccggaggctggagttcaggaccaaccgtgacaggacattgggaccgtacggcgcgaacactttggacaacgagcaatggcggcagttcgaggtgcccatggagaaagcggggtccattgtcggcttcagcggccggggcggcaactacaactacatcgacgccatcagcgtctacatcgccgtgtggaatcctgacaggttcttcgacaccctgcgccaacggggcattatcgcttaccggatggcgccgattcgcctgcagctccgggaaatggagaagctgaggaacgaacaagtggaacgcgaccacgtcgagaggaatgcagaggagggacaagaacacctgatcaggaagctaccatcgcacacacaggacaaatcacccgtcgagaagcttgtaaaggagcagcaagaactcactcttaaagtgaaagagctggaggaaatacacaaggagacgaaacagaaagtacatgacctacagaagcaggtagaccagaaaaaagaacgcttacgggagctagaatcaagtataatgccgcgtgaagtgtacaagcgccagtaccaggaagaaaacgagaccctgcggagcatggaagaggacctaaaacaactcgaacggcgagaacagacgatgcagcagcaattagggcagaaaatgctgcaagaattcagacatttggaggaccagattttggaaacaaaaagaaacgagcgctga

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Protein seq

MVAEKMVAEGDNELDFPGEVLTHISGYHDSKLIRRLEFRTNRDRTLGPYGANTLDNEQWRQFEVPMEKAGSIVGFSGRGGNYNYIDAISVYIAVWNPDRFFDTLRQRGIIAYRMAPIRLQLREMEKLRNEQVERDHVERNAEEGQEHLIRKLPSHTQDKSPVEKLVKEQQELTLKVKELEEIHKETKQKVHDLQKQVDQKKERLRELESSIMPREVYKRQYQEENETLRSMEEDLKQLERREQTMQQQLGQKMLQEFRHLEDQILETKRNER

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0200400 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os04g0200400 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0004030 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0004550 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0004060 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0004130 RBH 0.000000 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0008660 SBH 47.442173 0.0 1.319537
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0004170 SBH 0.653880 0.000000 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0102800 SBH 0.8536295 0.011154 0.012168
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0008240 SBH 1.801483 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0004210 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0004070 SBH 14.879279 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0008410 SBH 2.295971 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G004310 SBH 4.620907 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0004040 SBH 8.648705 3.542156 0.0
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Huazhong Agricultural University

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