Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0004130 | OGI:04021970 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:6680257-6682829 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGCGCTCGTTTCTGCTTTATGTCTTCCTCGTACCTTTTTGTTTCCAAAATCTGGTCCTCCAAATGTCTGAATTCTTGCAGCATTTTCTGCCCTAATTGCTGCTGCATCGTCTGTTCTCGCCGTTCGAGTTGTTTTAGGTCCTCTTCCATGCTCCGCAGGGTCTCGTTTTCTTCCTGGTACTGGCGCTTGTACACTTCACGCGGCATTATACTTGATTCTAGCTCCCGTAAGCGTTCTTTTTTCTGGTCTACCTGCTTCTGTAGGTCATGTACTTTCTGTTTCGTCTCCTTGTGTATTTCCTCCAGCTCTTTCACTTTAAGAGTGAGTTCTTGCTGCTCCTTTACAAGCTTCTCGACGGGTGATTTGTCCTGTGTGTGCGATGGTAGCTTCCTGATCAGGTGTTCTTGTCCCTCCTCTGCATTCCTCTCGACGTGGTCGCGTTCCACTTGTTCGTTCCTCAGCTTCTCCATTTCCCGGAGCTGCAGGCGAATCGGCGCCATCCGGTAAGCGATAATGCCCCGTTGGCGCAGGGTGTCGAAGAACCTGTCAGGATTCCACACGGCGATGTAGACGCTGATGGCGTCGATGTAGTTGTAGTTGCCGCCCCGGCCGCTGAAGCCGACAATGGACCCCGCTTTCTCCATGGGCACCTCGAACTGCCGCCATTGCTCGTTGTCCAAAGTGTTCGCGCCGTACGGTCCCAATGTCCTGTCACGGTTGGTCCTGAACTCCAGCCTCCGGATGAGCTTGCTGTCATGGTAGCCGCTGATGTGCGTTAACACCTCACCGGGGAAGTCGAGCTCCTGCGTGCAATCGACATATCAAACACAACGGTGATCAGTCGTGATAACAGCCAATCAATACTCCTTTTGAAAAGCTAATAGTGGTGGTAGTGAACAGTGCTGGAAATTTCGGTCCCCTCCGATACGATATTACTTTAGCCGAAATTTTAATTTTTTCACGAATTTTGGTAATATTTGTTCCAATTCAACTAAATTTTGTTCAAAATTTTGGAAATTTCGGACCGAAATTTCTGAAATTTCAGAATGTCGGTGACCTCCGATCAAAACGGGTTAACCGACAGAGTGAACCCTGATAGTGAATGGTGAATCTGGCACCATCCACCACCAAATTCTCACCATTCTGAAAAGAGAAAAAGATTGTGGGAAAGGGGAAGGGGGTGTGGAGGCCCACATGTCAGTATAAATATATGTAGAAATTAAGAACTACTGTTATTTTTTTAATTAAAATCCTGTTGCAACTTACAAACAATATGCTATAACCATATATATATTATACTCTCTTCGTCCCATAATATAAGTGATTTTGGAGGGATGTGACACTTCCCAGGACCACGAATCTAATTAGAGAGCATCCCTCTCTTATATTATCTTACATTATAGGACGGAGGGACGCGTTGGTTGCTTTCTTTTTCGTTTATTGCGGGGAGCGTTGGTCCGATCGCTCTGAATTGAATGCGTCTGTCATTTCCGAGACTCAACCAATATGGTAGCGCATGCATGCCCGTTTTTTTTCTCGTCAAATAATAAATCAGCCATCCCAAAGAACAGATTTGATTTAAAAGCTAAAATATTTGCTATAAGGCACTCTAGTTTTATGGATTTTGTTATACGACAATCTAGTAGTATTATAATTATTTGACAAAAGACACTGCCCACTGTTGTGATATGTCATCTTCCAAACGCAGACATAAATGTTTGCAAAGTACGATATTACCCTTGTCCACCTTTTGGGTAACTCAAATTTGAACGAGTTTTAGGTAATTGTAAGCATTTTGCAAAATTTAAAAGTGACCCAAATTATGAAAATCAAAATTATTATATTAAAGGTTGTTTAAATTCGAACAACATTATTTTAATTTTTTATTTTTTTGAAAAACATGAATGTGTTTGCTTTACGTAATGTCAGACCAGTTTTCAAGATTGCAAAACATCTTTAATTCAAAACATGTTCAAATTTAAATTTTGGACCAATTCTATCTCTCTTTTGGAAGGGGGATTTTTTATCTCTCCTTGACCGTTGCTTTATAAAATTTTGTAAAGTATTATCGGCAGTGAGTGTTTCTCTATAAAGAACCATAAAGCGCAGTAGAGAACATGCCACATGTACATTTAGAATGTCCTGGATTAGTTTTTGCTAATTCTTTACACCTATATATGCAATCCATCTGTACCTATACCAATTCAATCTCATACTGATCTAGAAAAGAAAAATCTAACAATTCAACAATCCATGTTACAACTAAGGGAATGAACAATGCACCTACGTATTCAGTCAAAAAAAAAATAAAACAATGCACCTACGTAGCGGAATGGTCTCAAGTCACCACGTAGGCGGACTGCTTTTTTTGGAGGTGAGAGAGCATGGGAAAAAGGGTTTCCATCAGGCTCCTTGTAACTTCTGCTGTGTACACTGTTCCCTTGTCACAAAAAGAACAAGGAAAGGCTTGGAGTCATTAAAAAAAACATGTGAAAAGGCTAGGGTACTCATCGGGTACCATGTCACTTGCCACACATTGTCGCCCTCTGCCACCATCTTCTCCGCCACCAT
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| CDS seq | ATGGTGGCGGAGAAGATGGTGGCAGAGGGCGACAATGAGCTCGACTTCCCCGGTGAGGTGTTAACGCACATCAGCGGCTACCATGACAGCAAGCTCATCCGGAGGCTGGAGTTCAGGACCAACCGTGACAGGACATTGGGACCGTACGGCGCGAACACTTTGGACAACGAGCAATGGCGGCAGTTCGAGGTGCCCATGGAGAAAGCGGGGTCCATTGTCGGCTTCAGCGGCCGGGGCGGCAACTACAACTACATCGACGCCATCAGCGTCTACATCGCCGTGTGGAATCCTGACAGGTTCTTCGACACCCTGCGCCAACGGGGCATTATCGCTTACCGGATGGCGCCGATTCGCCTGCAGCTCCGGGAAATGGAGAAGCTGAGGAACGAACAAGTGGAACGCGACCACGTCGAGAGGAATGCAGAGGAGGGACAAGAACACCTGATCAGGAAGCTACCATCGCACACACAGGACAAATCACCCGTCGAGAAGCTTGTAAAGGAGCAGCAAGAACTCACTCTTAAAGTGAAAGAGCTGGAGGAAATACACAAGGAGACGAAACAGAAAGTACATGACCTACAGAAGCAGGTAGACCAGAAAAAAGAACGCTTACGGGAGCTAGAATCAAGTATAATGCCGCGTGAAGTGTACAAGCGCCAGTACCAGGAAGAAAACGAGACCCTGCGGAGCATGGAAGAGGACCTAAAACAACTCGAACGGCGAGAACAGACGATGCAGCAGCAATTAGGGCAGAAAATGCTGCAAGAATTCAGACATTTGGAGGACCAGATTTTGGAAACAAAAAGAAACGAGCGCTGA
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| Protein seq | MVAEKMVAEGDNELDFPGEVLTHISGYHDSKLIRRLEFRTNRDRTLGPYGANTLDNEQWRQFEVPMEKAGSIVGFSGRGGNYNYIDAISVYIAVWNPDRFFDTLRQRGIIAYRMAPIRLQLREMEKLRNEQVERDHVERNAEEGQEHLIRKLPSHTQDKSPVEKLVKEQQELTLKVKELEEIHKETKQKVHDLQKQVDQKKERLRELESSIMPREVYKRQYQEENETLRSMEEDLKQLERREQTMQQQLGQKMLQEFRHLEDQILETKRNER |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0004130 | OsARC_04g0004130.01 | Chr04 | 6680257 | 6682829 | - | NAM | ||
| CDS seq | ATGGTGGCGGAGAAGATGGTGGCAGAGGGCGACAATGAGCTCGACTTCCCCGGTGAGGTGTTAACGCACATCAGCGGCTACCATGACAGCAAGCTCATCCGGAGGCTGGAGTTCAGGACCAACCGTGACAGGACATTGGGACCGTACGGCGCGAACACTTTGGACAACGAGCAATGGCGGCAGTTCGAGGTGCCCATGGAGAAAGCGGGGTCCATTGTCGGCTTCAGCGGCCGGGGCGGCAACTACAACTACATCGACGCCATCAGCGTCTACATCGCCGTGTGGAATCCTGACAGGTTCTTCGACACCCTGCGCCAACGGGGCATTATCGCTTACCGGATGGCGCCGATTCGCCTGCAGCTCCGGGAAATGGAGAAGCTGAGGAACGAACAAGTGGAACGCGACCACGTCGAGAGGAATGCAGAGGAGGGACAAGAACACCTGATCAGGAAGCTACCATCGCACACACAGGACAAATCACCCGTCGAGAAGCTTGTAAAGGAGCAGCAAGAACTCACTCTTAAAGTGAAAGAGCTGGAGGAAATACACAAGGAGACGAAACAGAAAGTACATGACCTACAGAAGCAGGTAGACCAGAAAAAAGAACGCTTACGGGAGCTAGAATCAAGTATAATGCCGCGTGAAGTGTACAAGCGCCAGTACCAGGAAGAAAACGAGACCCTGCGGAGCATGGAAGAGGACCTAAAACAACTCGAACGGCGAGAACAGACGATGCAGCAGCAATTAGGGCAGAAAATGCTGCAAGAATTCAGACATTTGGAGGACCAGATTTTGGAAACAAAAAGAAACGAGCGCTGA
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| Protein seq | MVAEKMVAEGDNELDFPGEVLTHISGYHDSKLIRRLEFRTNRDRTLGPYGANTLDNEQWRQFEVPMEKAGSIVGFSGRGGNYNYIDAISVYIAVWNPDRFFDTLRQRGIIAYRMAPIRLQLREMEKLRNEQVERDHVERNAEEGQEHLIRKLPSHTQDKSPVEKLVKEQQELTLKVKELEEIHKETKQKVHDLQKQVDQKKERLRELESSIMPREVYKRQYQEENETLRSMEEDLKQLERREQTMQQQLGQKMLQEFRHLEDQILETKRNER
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0200400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0200400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004030 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004550 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004060 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004030 | SBH | 43.443958 | 0.0 | 3.994812 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004170 | SBH | 0.653880 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0102800 | SBH | 0.8536295 | 0.011154 | 0.012168 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003980 | SBH | 0.326026 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004210 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004070 | SBH | 14.879279 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003940 | SBH | 0.880217 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004070 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004310 | SBH | 4.620907 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004040 | SBH | 8.648705 | 3.542156 | 0.0 |
