Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0200400 | OGI:04021970 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:6834186-6838247 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCTTCTTCTATTTGACGCAGGTCCATGCGCAGAGGCGACGCCCGGTAAACGCGGACGCCCTGCCTGCGCATGCTATCATAGAACCTCTCGGGATTCCAGACGGCGACGTAAACGCCGATGGCGTCCGTGAAGTTGCCACTCCGGCCGCAGAAGCCGACGATGGACCCCGAGTGCTCCATGGAGACCTCGAACCGCGTCCATCCAGCTCTGTCTTCTCCAAGATTGCCGTATGGTCCGAACGTCCTGTTCCGGTTGCTCCTGAACTGCAACCACCGGATGAGGTGGTTGTCATGGTAGCCGCACATGTGCGTCAACACCTCCCCATGGAAGTCGAGCTCCTCCTGTGTGCGTCCATGCATCAGGTTATTTGTCAGTCAGTGATTAATTAGTACAAAGCATCTCTCTGCAAGCTGTTTGTTTTAACGGAAAGGCTATATGGCTGTTGACAGAAAAAGGATGGATGGATCATTCGTTTTTTGGGCCATCCATTCATCTTTGAGATTAGTGCTGATTATGTTCGGGCTTTGATAGACATGCAGTTTTTAGTCCTTTGACTGACCTTCGTGGGACCCACATTAACTATTGAATTTTGAAATTCGCGCCTGCATTATCTCTGTTTGAGAGAGAGAAACGTAGAGATTTTTCTATCCCTGAGACAGAAATCGAGAGGGGAGGACACAAGAGAACAGATTTTTGATATTTGACTTGTTCTTTCGGATATTGCACTACGATTCGTCCTAGAACAGTGCGAGATGAGGATGAGGGCCCGTGTTTCGACATGCCTCGTGGTATCGTGGTAGTCAACGTGACTCGATCTCCGTGCGAAATTTCTGATTTTGCGCGACGTGACTCGATCTCTGTTCAAAATTTTCGATTTTTCACGCTGTGTCTATAGAGTGGTTTTTTTTTCTATTGTATTTAACGTTTTCTTAGCCGTAGGATTATGCGCTAAGATTAGTGCAGAAAATTACAGTGCTATATAACTAAAATTACATTCGTAAATTCAGTTGATACGATATGTAAGTGCACTGTAATTTTGATAAAAATACTGTGTAAATAAATATGTATTTATTATTTCCTTTAAAATATAAAATTACAATTCTATAGACCTAATATTACATTTGTAAGTTAAGTTGATATGACATGTAAGTGTATTGTAATTTCACTATAGTTATACTGTAATTACAATGTAACTATAATAGAATTACACTGTAACTTTTAGTGTAATTGCAGTGTAACTATAGTGAAATTTATCTTCTATGCATTAGCATATACCTAATTGAGTATATGTCTATGGGTAATTCAATATGGAAGTTTGCTAGTTTTATGGATATGGGCATTTTAGTAGATCTGAAAGTTTGTTCTTGGATATTTGACATGTTTTTGTTTAGCTTATTTGAGCTTTAAATTGTGCTTCCTGTTTTTTTTCTCGCTATATTTTTGGGCCAGTGATTGCTCCTCTAGGTTTATTTGGGCATGTGATTTATTAGATATTGAATTTGGGCTTTAGAATCAGTTTGTTGTACTTTCTGGTTTGGGCTCAAGAAATTTGGGCCTTCGTATGGGCATGTGTTTGGGCTCAGGAAAAAAAATTGGGCCTCCAATAAAATCATATATGAAATTTGCTCTTTTATTTTTTCAGTTTGTTTTTTATGTCAAATATTTCCAGCGGTTAGATCTTTATCCTAAGGCTATAAAATCTGCATGATTTGAGCATAAAAATTCTGTCAAATAATTTTCTCCCAAATTAAACCGTTCAATCGACGACTGAGTATTTGTCTGTGTTTTTACATAATTAAAACAGTGGAAAAATTAATACAACTCCACGATTAAAGAAGAGTCCCTACTGATTCTATAATACAACTAGTTGATAAGTTCTATTAGATCATGATTAAATGAACTAGTCACCGGCTCACCGCTCATGAAAACCTTTATGAGATTGTCAGAAGCAAGAAGCAGAGGCCTTGGGCTTTAATAAATTGGTCATGATCTGTGCCCATCGTCGTTACCAGGAGTTGTTTTACGATACACGGTACAAGTGACAAGGGGCACTGGTGTGAGTAAATTCTAACCATTCATTTGCGTGGGCATTTCTTTAAATGGTATATTAATTGTAAAATTTACCCACCTTTCCACCGAAGGTAATTAAGTCAATAGTTTCTTTCTCTACAGCTACAGTACTGAACCCTTAGCGCATCATTACTGCAAAAGCCTCATAGGTGTGAGTTCATTTAAAACCGGCACATATAAACCTTTCCCTAAATCCACAGGATGAAAAAGGATACAAAAACGTCACCTTTGGGTAACTATATATGCTGGTTGTAGAGGAAAATCAACACAAATACTATAGGTGTCGGTTTTTTTTAGAAAAACTTGTACCTATAATTTATAGGTACTGGTTAAGTAAAAGCCACCCGGAGCGGGCGACGAATAGGACGATGTCGGATGTTGGTGGCGACGGTGGCTAGGTTTGCGGTTCGATGACGGCAGCGACGACAACAACCTCCAGCATGCTCGATGTTGACACGAGGGTGGCACTGGCAGCGGAGGGGTGAAGGCGGATCAGGTGGGAGTGGAGGATGCGCAGCGATGGGCATCTAATCTGGTGGAGGCTGGCCTTTAGTGAGCCCGTTCCGGTTTTGGCCAGCCTTGAGCTTCTTGGATCCGGTGGCTGTGGGTTGCGGCTCAGAAAGGCAGGACCACGATGTAGTCAGATGGATCTAGCCCGCCGTACTCTTCATCTTCTGCGGGAGACCTTGATCGTCTGGGAGACCACCGAGCGGTGTCGAGCCTTGGGGCATGCCGGATCTGGCGGTTGTGGGTTGGGTGGATGTAGAAGGTAGAGGGAGAGGAAAAAGAGATAAGACGAGAAACAAAAGAGCAAAAGATTATTATTTTAAGGGTTTGAGAGAAACGAGGTTACGAGAGCTGGGGTGTTTTTTAATCTCATTGGAGCATGATTTGATCACTAACGCTAAACAAATTTAGCCATATTCCATTTTAGCAATGTGATTTTGGAATTTATTTTAGTCATCTTATACTGCTTCTAGATTTTGATATAATCATTAGATTTGAGCTTAGTTTTTTTTTTAGATTACGTAGTGAACTCTAGTTTATACCTATGATGCAGTTCTATGGTTAGTTTTTAATCTATCTAGATTTTACTGAACTCCTGGTTCAGACTAAAATTTTTTTAGATCCCATTCATCTGTTGTTTTTCGTATTTATTGATTAAAATTAAATATGTATATAACTTATGTTGAAAGTTATACATCAAGCGGATTTGAATAGGTGATGTTCTAATGATTTTCAGTTGTAGTGGTTTGCTGATTTCACTGTTCACGCATTGTAGCATCGCGTGATTGTCGACGGTGTTGTGAATTTAAGTATTGTGTTTGGTCTTCTTTTTTTTATTAGGGTGGTTAATTTAGGGCTGTCATAGCATTATAACAGATTAACAGTACTAGAATGATTATTTGTTTTATTTCTGCCGCTTGTTTGTTTTTGTTGTATACATTGAAATTAAAATTAAGCGATAACCATTCACCCCCTTCTGATCAAGGCAACCTCGCTACAAGTGCCATGCGTACATCAAGCCGCTCCTCCAAAGAGTAGTCCAAAGAGTAGAGTATATATAGAATTTTGAATCCAGGATGCTATAATCGATTTTTAATTGTCAACAAAAAGTATTTAGATTTTGGGTAGACATGGCAGTAATAAATATAAGTTTCTAATAAGATAGAGTAGATCCTATAAGGAGTGGAGAAATTGTTTTCACTTGGAAAATCACTTCCTAAGAACAAATCTATCAAGTATTGCTTGCTACATACCTCGGGTATTCCATTGCCTCCCTCTCCTTGCAGGGTACCTTTCACACGTTTGCCATTGTCGTCGTATTCAAACAACATTGAGCTGACACACCAGGAAGACCCTATACTCATTCGGCGTACACCGGTGTAACCGCCAGCACTGGCACCATGGCCTCCCTCATCCCAAGCATGGCCTCCAGTTCCACCCCACGGCCCTATCTTCACACGCTGAAGTGTCAAGACCATTAATAC
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| CDS seq | ATGGTCTTGACACTTCAGCGTGTGAAGATAGGGCCGTGGGGTGGAACTGGAGGCCATGCTTGGGATGAGGGAGGCCATGGTGCCAGTGCTGGCGGTTACACCGGTGTACGCCGAATGAGTATAGGGTCTTCCTGGTGTGTCAGCTCAATGTTGTTTGAATACGACGACAATGGCAAACGTGTGAAAGGTACCCTGCAAGGAGAGGGAGGCAATGGAATACCCGAGGAGGAGCTCGACTTCCATGGGGAGGTGTTGACGCACATGTGCGGCTACCATGACAACCACCTCATCCGGTGGTTGCAGTTCAGGAGCAACCGGAACAGGACGTTCGGACCATACGGCAATCTTGGAGAAGACAGAGCTGGATGGACGCGGTTCGAGGTCTCCATGGAGCACTCGGGGTCCATCGTCGGCTTCTGCGGCCGGAGTGGCAACTTCACGGACGCCATCGGCGTTTACGTCGCCGTCTGGAATCCCGAGAGGTTCTATGATAGCATGCGCAGGCAGGGCGTCCGCGTTTACCGGGCGTCGCCTCTGCGCATGGACCTGCGTCAAATAGAAGAAGAG
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| Protein seq | MVLTLQRVKIGPWGGTGGHAWDEGGHGASAGGYTGVRRMSIGSSWCVSSMLFEYDDNGKRVKGTLQGEGGNGIPEEELDFHGEVLTHMCGYHDNHLIRWLQFRSNRNRTFGPYGNLGEDRAGWTRFEVSMEHSGSIVGFCGRSGNFTDAIGVYVAVWNPERFYDSMRRQGVRVYRASPLRMDLRQIEEE |
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| Function | Jacalin-related lectin 19 [UniProtKB/Swiss-Prot:Q9SSM3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0200400 | Os04t0200400-00 | Chr04 | 6834186 | 6838247 | - | irgsp1_rep | ||
| CDS seq | ATGGTCTTGACACTTCAGCGTGTGAAGATAGGGCCGTGGGGTGGAACTGGAGGCCATGCTTGGGATGAGGGAGGCCATGGTGCCAGTGCTGGCGGTTACACCGGTGTACGCCGAATGAGTATAGGGTCTTCCTGGTGTGTCAGCTCAATGTTGTTTGAATACGACGACAATGGCAAACGTGTGAAAGGTACCCTGCAAGGAGAGGGAGGCAATGGAATACCCGAGGAGGAGCTCGACTTCCATGGGGAGGTGTTGACGCACATGTGCGGCTACCATGACAACCACCTCATCCGGTGGTTGCAGTTCAGGAGCAACCGGAACAGGACGTTCGGACCATACGGCAATCTTGGAGAAGACAGAGCTGGATGGACGCGGTTCGAGGTCTCCATGGAGCACTCGGGGTCCATCGTCGGCTTCTGCGGCCGGAGTGGCAACTTCACGGACGCCATCGGCGTTTACGTCGCCGTCTGGAATCCCGAGAGGTTCTATGATAGCATGCGCAGGCAGGGCGTCCGCGTTTACCGGGCGTCGCCTCTGCGCATGGACCTGCGTCAAATAGAAGAAGAG
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| Protein seq | MVLTLQRVKIGPWGGTGGHAWDEGGHGASAGGYTGVRRMSIGSSWCVSSMLFEYDDNGKRVKGTLQGEGGNGIPEEELDFHGEVLTHMCGYHDNHLIRWLQFRSNRNRTFGPYGNLGEDRAGWTRFEVSMEHSGSIVGFCGRSGNFTDAIGVYVAVWNPERFYDSMRRQGVRVYRASPLRMDLRQIEEE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0200400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g12390 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0330200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008430 | SBH | 5.664021 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009060 | SBH | 1.469300 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008860 | SBH | 7.954593 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004140 | RBH | 0.182490 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004030 | RBH | 43.443958 | 0.0 | 3.994812 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0101200 | RBH | 2.810651 | 0.6423745 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004170 | RBH | 0.653880 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0242200 | SBH | 11.0903 | 1.9629895 | 0.065466 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003980 | RBH | 0.326026 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004220 | SBH | 0.638923 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004070 | RBH | 14.879279 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003940 | RBH | 0.880217 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004080 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004310 | RBH | 4.620907 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004040 | RBH | 8.648705 | 3.542156 | 0.0 |
