Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0330200 | OGI:04050120 | 11/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:15342893-15344478 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCTTCTTCTATTTGACGCAGGTCCATGCGCAGAGGCGACGCCCGGTAAACGCGGACGCCCTGCCTGCGCATGCTATCATAGAACCTCTCGGGATTCCAGACGGCGACGTAGACGCCGATGGCGTCCACGAAGTCGTCACTCCGGCCGCAGAAGCCGACGATGGACCCCGAGTGCTCCATGGAGACCTCGAACCGCGTCCATCCAGCCTGGTCTTCTAGAAGATTGCCGTATGGTCCGAACGTCCTGTTCCGGTTGCTCCTGAACTGCAACCACCGGATGAGGTGGTTGTCATGGTAGCCGCACATGTGCGTCAACACCTCCCCATGGAAGTCGAGCTCCTCCTGTGTGCGTCCATGCATCAGGTTATTTGTCAGTCAGTGATTAATTAGTACAAAGCATCTCTCTGCAAGCTGTTTGTTTTAATTTTCTCCCAAATTAAACCGTTCAATCGACGACTGAGTATTTGTCTGTGTTTTTACATAACTAAAACAGTGGAAAAATTAATACAACTCCACGATTAAAGAAGAGTCCCTACTGATTCTATAATACAACTAGTTGATGAGTTCTATTAGATCATGATTAAATGAACTAGTCACCGGTTCACCGCTCATGAAAACCTTTATGAGATTGTCAGAAGCAAGAAGCAGAGGCCTTGGGCTTTAATAAATTGGTCATGATCTGTGCCCATCGTCGTTACCAGGAGTTGTTTTACGATACACGGTACAAGTGACAAGGGGCACTGGTGTGAGTAAAATCCAACCATTCATTTGCGTGGGCATTTCTTTAAATGGTATATTAATTGTAAAATTTACCCACCTTTCCACTGAAGGTAATTAAGTTAATAGTTTCTTTCTCTACAGCTACAGTACTGAACCCTTAGCGCATCATTACTGCAAAACCCTCATAGGTGTCCGTTCATTTAAAACCGGCACATATGAACCTTTCCCTACCTCCACAGGATGAAAAAAGTTACAGAAACGTCACCTTTGGGTAACTATATATGCTGGTTGTAGAGGAAAATCAACACAAATACTATATGTGTCGGTTTTTTTTAGAAAAACTTGTACCTATAATTTATAGGTACCGGTTAACTAAAAGCCACCCAGAGAGGGCGACGAATAGGATGACGTCAGATGTTGGTGGCGCCTAATCAATTTTCAACAAAAAATATTTAGATTTTGGGTAGACATGGCAGTAATAAATATAAGTTTCTAATAAGATAGAGTAGATCCTATAAGGAGTGGAGAAATTGTTTTCACTTGGAAAATCACTTCCTAAATCCTAAGATCACAAATCTATCAAGTATTGCTTGCTACATACCTCGGGTATTCCATTGTCTCTCTCTCCATGCAGGGTACCTTTCACACGTTTGCCATTGTCGTCGTATTCAAACAACATCGAGCTGACACACCAGGAAGACCCTATACTCATTCGGCGTACTCCGGTGTAACTGCCAGCACTGGCACCATGGCCTCCTTCATCCCAAGCATGGCCTCCAGTTCCACCCCACGGCCCTATCTTCACACGCTGAAGTGTCAAGACCATTAATACGCCTATGAATGTCCCCAAATATGTGTGCCTGCAT
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| CDS seq | ATGGTCTTGACACTTCAGCGTGTGAAGATAGGGCCGTGGGGTGGAACTGGAGGCCATGCTTGGGATGAAGGAGGCCATGGTGCCAGTGCTGGCAGTTACACCGGAGTACGCCGAATGAGTATAGGGTCTTCCTGGTGTGTCAGCTCGATGTTGTTTGAATACGACGACAATGGCAAACGTGTGAAAGGTACCCTGCATGGAGAGAGAGACAATGGAATACCCGAGGAGGAGCTCGACTTCCATGGGGAGGTGTTGACGCACATGTGCGGCTACCATGACAACCACCTCATCCGGTGGTTGCAGTTCAGGAGCAACCGGAACAGGACGTTCGGACCATACGGCAATCTTCTAGAAGACCAGGCTGGATGGACGCGGTTCGAGGTCTCCATGGAGCACTCGGGGTCCATCGTCGGCTTCTGCGGCCGGAGTGACGACTTCGTGGACGCCATCGGCGTCTACGTCGCCGTCTGGAATCCCGAGAGGTTCTATGATAGCATGCGCAGGCAGGGCGTCCGCGTTTACCGGGCGTCGCCTCTGCGCATGGACCTGCGTCAAATAGAAGAAGAG
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| Protein seq | MVLTLQRVKIGPWGGTGGHAWDEGGHGASAGSYTGVRRMSIGSSWCVSSMLFEYDDNGKRVKGTLHGERDNGIPEEELDFHGEVLTHMCGYHDNHLIRWLQFRSNRNRTFGPYGNLLEDQAGWTRFEVSMEHSGSIVGFCGRSDDFVDAIGVYVAVWNPERFYDSMRRQGVRVYRASPLRMDLRQIEEE |
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| Function | Jacalin-related lectin 19 [UniProtKB/Swiss-Prot:Q9SSM3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0330200 | Os04t0330200-01 | Chr04 | 15342893 | 15344478 | - | irgsp1_rep | ||
| CDS seq | ATGGTCTTGACACTTCAGCGTGTGAAGATAGGGCCGTGGGGTGGAACTGGAGGCCATGCTTGGGATGAAGGAGGCCATGGTGCCAGTGCTGGCAGTTACACCGGAGTACGCCGAATGAGTATAGGGTCTTCCTGGTGTGTCAGCTCGATGTTGTTTGAATACGACGACAATGGCAAACGTGTGAAAGGTACCCTGCATGGAGAGAGAGACAATGGAATACCCGAGGAGGAGCTCGACTTCCATGGGGAGGTGTTGACGCACATGTGCGGCTACCATGACAACCACCTCATCCGGTGGTTGCAGTTCAGGAGCAACCGGAACAGGACGTTCGGACCATACGGCAATCTTCTAGAAGACCAGGCTGGATGGACGCGGTTCGAGGTCTCCATGGAGCACTCGGGGTCCATCGTCGGCTTCTGCGGCCGGAGTGACGACTTCGTGGACGCCATCGGCGTCTACGTCGCCGTCTGGAATCCCGAGAGGTTCTATGATAGCATGCGCAGGCAGGGCGTCCGCGTTTACCGGGCGTCGCCTCTGCGCATGGACCTGCGTCAAATAGAAGAAGAG
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| Protein seq | MVLTLQRVKIGPWGGTGGHAWDEGGHGASAGSYTGVRRMSIGSSWCVSSMLFEYDDNGKRVKGTLHGERDNGIPEEELDFHGEVLTHMCGYHDNHLIRWLQFRSNRNRTFGPYGNLLEDQAGWTRFEVSMEHSGSIVGFCGRSDDFVDAIGVYVAVWNPERFYDSMRRQGVRVYRASPLRMDLRQIEEE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0330200 | RBH | 2.707618 | 7.185624 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g26320 | RBH | 1.225841 | 2.929758 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0200400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008430 | RBH | 5.664021 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009060 | RBH | 1.469300 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008860 | RBH | 7.954593 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008500 | RBH | 1.911417 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008660 | RBH | 47.442173 | 0.0 | 1.319537 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0245000 | RBH | 9.432552 | 0.459097 | 0.1569735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0006930 | SBH | 0.124397 | 0.0 | 1.212846 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0242200 | RBH | 11.0903 | 1.9629895 | 0.065466 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008240 | RBH | 1.801483 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004220 | RBH | 0.638923 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004070 | SBH | 14.879279 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008410 | RBH | 2.295971 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0008770 | RBH | 1.765486 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004310 | SBH | 4.620907 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004040 | SBH | 8.648705 | 3.542156 | 0.0 |
