Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLaMu_03g0033121		OGI:03083480 \| 16/16			LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)			Chr03:32381086-32381264		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		SCP19, OsSCP19
DNA seq		aaaccaatcctaaacaaggttttgccatgggcaaacgttggctagataataagcctctgtgatgttcacctgctttgacccaacctgtatactcgtgcaactggtattgtttgtatgaagaactactttatctcccatgttttccaacaacgaatagaagacaagataaatactccgcc
CDS seq		accaatcctaaacaaggttttgccatgggcaaacgttggctagataataagcct
Protein seq		TNPKQGFAMGKRWLDNKP
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLaMu_03g0033121	OsLaMu_03g0033121.01	Chr03	32381086	32381264	+	IsoSeq
CDS seq	accaatcctaaacaaggttttgccatgggcaaacgttggctagataataagcct
Protein seq	TNPKQGFAMGKRWLDNKP

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.000000	19.097668	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os03g52040	RBH	0.000000	0.110022	1.170091
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_03g0033460	RBH	0.0	26.226118	2.756449
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_03g0033160	SBH	0.061128	5.233663	2.898850
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_03g0033230	RBH	0.0	33.996284	5.481895
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_03g0033550	SBH	0.0	0.558627	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	NA	NA	NA	NA	NA
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_03G032890	SBH	0.000000	2.657251	5.664279
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_03g0032730	SBH	0.395599	36.973579	21.343933

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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