Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0009210 | OGI:12026770 | 2/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:9371327-9375503 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatctctctctgagccccgccatgcggctttcccactctcttatgattgaaacttttagatgtccaggatggatactagctgcattcctgatggcagcttctgcagcctccacgctacttctagtggctctataacaactaatcgtggcatgaaggtcctccaggcttgagaggtgatgaaaactgaactcgaaacctgcattagactccatttcctctgctctaaaccgaatctgtaaccgtcgaagctttgccattgcttcctgttgaaataacatcctcaagccacccccctcataatatatgaatctgaactccatcaggctctggaattgttggctgctgatacagagcctttcgtcaggcacaaaatgcagtttcaaccggaggtagagcagagtagatatgcttccaaggacactgagatcttcctgcttaatcctctggaaatagatgtctaggtgagcgagattaacaagagatagcatctgctgagaaggcctatttatgcaattgccagatattacaagcttctgaatgtttggaacagtgcagcacaacaaatccagtaatttatctctcaagtaatcacaacatgaaatttcgagtgactgaattttgtgtttgcccaacacagtaagagaagactccaaagcttcctcataccttcccatctcatgagcaccaagtgtatcactgccatgaagaactatctcaagcgtccttagtttggtcaatctcctgagatcttccacaagttttaggggtttatacaaccgagcagaagacagcacctgtaaggattgcagatctccaataccatcaggcaattgcactttattgccaacaagtagacgagccaagttatgcaaacggaccacggttggcggaaacttttcgattccactgccacgtatatccagagtttgtagataatggaggttcccgaattgatctgggagctgggtaatgccataagaagtgactctcaaatacttcaattggaaaaaacttccaaggtatttaatgtgtccattaccaagacaaaaatcataatccactaaaaccaatacactcaatgaatggaattttaagaaaggaggtattttctctggtacctcaaagaagcttagcgaacgaacctgtgacaagttgtccatgatcttttgaactacattcacatcattctcaacagagttggactggaatgagagccgtcgaatcttattacccaaatatttatacccttgctcgtcaactacggtgagaaaattttcctcagatgaaatggatatgataaggttaagcaccatatcatgtactcgacaagcatttgcggtaccatcatatttgatgtcaattggttgaatcatgtttctgttgataagctcattaaagtaactccctccaacttggtccaatgtttgacccttcacttcagtgatgaaaccttcagctatccatctccatatcagttcatctctatcaatcttataatcctctggaaatacactaagatacaacaagcatgtcttcagatgatagggtagatcataatagctaagcagcagtatatcgctcatcccttgtgaactaaacgcagaactgagagaattgtgcacttgctcccattggtcttttgtatcagatttactagctagcagactagctaaacagataatagctaatggaaagccatggcactttttaatgattgcatgtgaaacttcttccaagtgagtaggaaaattggagtctgagtggaaaagccttttcagaaatagcttcttagagtcttgctcatttagaggttgaatgttgtaaacagaaccttgaaaaccagagcagcatgattttgccacattgacattccgtgtggttgtaattattctactacaaagactgttctcaggcaaagctaacctcacatgttcccatgcagatgcactccagatatcatcaacaatgatgaagtacctatgtacatgtaggagattattagtctgccttaacttaaaaatgcagtatacatctcatgagaagtactgcagaagatattatgccactctaaaagtatatattagatatttatgccacttttaattatccggaacgcttctggaagacaaatttaatacacatatatagtgttataaatacaatattaccacattttatcgctcaattttaatcaagtattcttcacctcgaactttaaaaagaaaatataatatgtgcagggcagccatctatatctaacacttggtgcctctcacactcatgaaacactagtacactacattcagatttctctgccagcaaacattttcaatgtttcatgtattttcctttttcattacattcaattgcaatgttgcatgtattttccttttacattacatccaaactgcagatgctatcacagttttttggttattatgcatggatctccatttttctttgtaaatttcgagtaaaactggcattcttagtattagaaatgatggtgtacactgctgttggggctgttaaaacagtacagttaggagaatgccatttagaatcaaaagaagttgtgaaataacactctggtccataccctactatttctttctatcctttctgttagtcagatcagaacaaaaggtcatttacatcctcaaaccagacgaagcccataatgctcatcaaaaaggaatgcttatttgcaatgaagctaattacaaccaatagcagaggatgctgtgacaccaagacaagacaactgttcaagctgcacggccacagcacttctaatccacaactgaccctcccattactggcatcctataaattaattctgagttgcatctatagaaattttaatacaaaatcatgctaatatatattggctccctcagtaattggaggAaaaaaaagggaaatatctataagttacaaaacttgttctgttggctctgacttaaagaacactgcaaatgaagatgtataatcgatctgttacggatgtatgttaaattttcccgcgtatttactacagcagaatcaccataaacagttattgcatttgtacaaccaaataggctctatttataacaaacatatgtaggactatataaatctgctgttgcaccaaaaaagaatttgctgttgcacaggaaattcaggtaatacttataactgcaaggtcttaaactagcatgtcaaaaattatgccatagataaaaggacaacattaccaaatgatagggtcacatttactaatttctaggatctaaagattaacgtgcaatgaatcaaagagatagctaatgatatttgtttgtacctcttattctctaggaatactctgagcttaccaatgagttgcctctcatcatcggatttatctcctttgaccccaacaactttaatttgcttatcatcatcagagttgtctcggctggtcacatctttaagcatatcaaataaaattttctttatgttaggactctgcgaaacagatataaaagctgagcaatcaaattgatccttgattttgttgtatacttggttagccagagtagttttgccgagtccgccaaaacccacaatggataccactttgagtttttgccccgaaccatcctctttcatcaacaattcaatgatctcttccatagggccatggataccaacaagcttctcttcttcaacataaagcgccggtaggcggggatcaaTtttagtcccgtcgacatgtgcattgcactcgctgaagtagtacctcaaacggcgatcactctcttccttgacacgagccttaagttcttggatctggttagcaatctgatgccttgaccataacattctaatcttctttgccatcttgagaacaatgttgaccttatcatccccgcgattcaatttgtgcatgaataaatcgatgcaatcctcgatatcatagctcagttcccggaccttgttcctccagtccttcacctgcacatccatgttctcctccacactggccatattcatcagaaagacgttcatggtgctcagctcatctctcaagaacctgatgtcacccttgacacctttcagaagcccgcgttcttctcccagcaatgcagagagcttggcaaggagggatcccatcaccccagtggcgacgctcactgctgctccgtccat
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| CDS seq | atggacggagcagcagtgagcgtcgccactggggtgatgggatccctccttgccaagctctctgcattgctgggagaagaacgcgggcttctgaaaggtgtcaagggtgacatcaggttcttgagagatgagctgagcaccatgaacgtctttctgatgaatatggccagtgtggaggagaacatggatgtgcaggtgaaggactggaggaacaaggtccgggaactgagctatgatatcgaggattgcatcgatttattcatgcacaaattgaatcgcggggatgataaggtcaacattgttctcaagatggcaaagaagattagaatgttatggtcaaggcatcagattgctaaccagatccaagaacttaaggctcgtgtcaaggaagagagtgatcgccgtttgaggtactacttcagcgagtgcaatgcacatgtcgacgggactaaaAttgatccccgcctaccggcgctttatgttgaagaagagaagcttgttggtatccatggccctatggaagagatcattgaattgttgatgaaagaggatggttcggggcaaaaactcaaagtggtatccattgtgggttttggcggactcggcaaaactactctggctaaccaagtatacaacaaaatcaaggatcaatttgattgctcagcttttatatctgtttcgcagagtcctaacataaagaaaattttatttgatatgcttaaagatgtgaccagccgagacaactctgatgatgataagcaaattaaagttgttggggtcaaaggagataaatccgatgatgagaggcaactcattggtaagctcagagtattcctagagaataagaggtacttcatcattgttgatgatatctggagtgcatctgcatgggaacatgtgaggttagctttgcctgagaacagtctttgtagtagaataattacaaccacacggaatgtcaatgtggcaaaatcatgctgctctggttttcaaggttctgtttacaacattcaacctctaaatgagcaagactctaagaagctatttctgaaaaggcttttccactcagactccaattttcctactcacttggaagaagtttcacatgcaatcattaaaaagtgccatggctttccattagctattatctgtttagctagtctgctagctagtaaatctgatacaaaagaccaatgggagcaagtgcacaattctctcagttctgcgtttagttcacaagggatgagcgatatactgctgcttagctattatgatctaccctatcatctgaagacatgcttgttgtatcttagtgtatttccagaggattataagattgatagagatgaactgatatggagatggatagctgaaggtttcatcactgaagtgaagggtcaaacattggaccaagttggagggagttactttaatgagcttatcaacagaaacatgattcaaccaattgacatcaaatatgatggtaccgcaaatgcttgtcgagtacatgatatggtgcttaaccttatcatatccatttcatctgaggaaaattttctcaccgtagttgacgagcaagggtataaatatttgggtaataagattcgacggctctcattccagtccaactctgttgagaatgatgtgaatgtagttcaaaagatcatggacaacttgtcacagctcccagatcaattcgggaacctccattatctacaaactctggatatacgtggcagtggaatcgaaaagtttccgccaaccgtggtccgtttgcataacttggctcgtctacttgttggcaataaagtgcaattgcctgatggtattggagatctgcaatccttacaggtgctgtcttctgctcggttgtataaacccctaaaacttgtggaagatctcaggagattgaccaaactaaggacgcttgagatagttcttcatggcagtgatacacttggtgctcatgagatgggaaggtatgaggaagctttggagtcttctcttactgtgttgggcaaacacaaaattcagtcactcgaaatttcatgttgtgattacttgagagataaattactggatttgttgtgctgcactgttccaaacattcagaagcttgtaatatctggcaattgcataaataggccttctcagcagatgctatctcttgttaatctcgctcacctagacatctatttccagaggattaagcaggaagatctcagtgtccttggaagcatatctactctgctctacctccggttgaaactgcattttgtgcctgacgaaaggctctgtatcagcagccaacaattccagagcctgatggagttcagattcatatattatgaggggggtggcttgaggatgttatttcaacaggaagcaatggcaaagcttcgacggttacagattcggtttagagcagaggaaatggagtctaatgcaggtttcgagttcagttttcatcacctctcaagcctggaggaccttcatgccacgattagttgttatagagccactagaagtagcgtggaggctgcagaagctgccatcaggaatgcagctagtatccatcctggacatctaaaagtttcaatcataagagagtgggaaagccgcatggcggggctcagagagagatga
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| Protein seq | MDGAAVSVATGVMGSLLAKLSALLGEERGLLKGVKGDIRFLRDELSTMNVFLMNMASVEENMDVQVKDWRNKVRELSYDIEDCIDLFMHKLNRGDDKVNIVLKMAKKIRMLWSRHQIANQIQELKARVKEESDRRLRYYFSECNAHVDGTKIDPRLPALYVEEEKLVGIHGPMEEIIELLMKEDGSGQKLKVVSIVGFGGLGKTTLANQVYNKIKDQFDCSAFISVSQSPNIKKILFDMLKDVTSRDNSDDDKQIKVVGVKGDKSDDERQLIGKLRVFLENKRYFIIVDDIWSASAWEHVRLALPENSLCSRIITTTRNVNVAKSCCSGFQGSVYNIQPLNEQDSKKLFLKRLFHSDSNFPTHLEEVSHAIIKKCHGFPLAIICLASLLASKSDTKDQWEQVHNSLSSAFSSQGMSDILLLSYYDLPYHLKTCLLYLSVFPEDYKIDRDELIWRWIAEGFITEVKGQTLDQVGGSYFNELINRNMIQPIDIKYDGTANACRVHDMVLNLIISISSEENFLTVVDEQGYKYLGNKIRRLSFQSNSVENDVNVVQKIMDNLSQLPDQFGNLHYLQTLDIRGSGIEKFPPTVVRLHNLARLLVGNKVQLPDGIGDLQSLQVLSSARLYKPLKLVEDLRRLTKLRTLEIVLHGSDTLGAHEMGRYEEALESSLTVLGKHKIQSLEISCCDYLRDKLLDLLCCTVPNIQKLVISGNCINRPSQQMLSLVNLAHLDIYFQRIKQEDLSVLGSISTLLYLRLKLHFVPDERLCISSQQFQSLMEFRFIYYEGGGLRMLFQQEAMAKLRRLQIRFRAEEMESNAGFEFSFHHLSSLEDLHATISCYRATRSSVEAAEAAIRNAASIHPGHLKVSIIREWESRMAGLRER |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0009210 | OsKeNa_12g0009210.01 | Chr12 | 9371327 | 9375503 | - | NAM | ||
| CDS seq | atggacggagcagcagtgagcgtcgccactggggtgatgggatccctccttgccaagctctctgcattgctgggagaagaacgcgggcttctgaaaggtgtcaagggtgacatcaggttcttgagagatgagctgagcaccatgaacgtctttctgatgaatatggccagtgtggaggagaacatggatgtgcaggtgaaggactggaggaacaaggtccgggaactgagctatgatatcgaggattgcatcgatttattcatgcacaaattgaatcgcggggatgataaggtcaacattgttctcaagatggcaaagaagattagaatgttatggtcaaggcatcagattgctaaccagatccaagaacttaaggctcgtgtcaaggaagagagtgatcgccgtttgaggtactacttcagcgagtgcaatgcacatgtcgacgggactaaaAttgatccccgcctaccggcgctttatgttgaagaagagaagcttgttggtatccatggccctatggaagagatcattgaattgttgatgaaagaggatggttcggggcaaaaactcaaagtggtatccattgtgggttttggcggactcggcaaaactactctggctaaccaagtatacaacaaaatcaaggatcaatttgattgctcagcttttatatctgtttcgcagagtcctaacataaagaaaattttatttgatatgcttaaagatgtgaccagccgagacaactctgatgatgataagcaaattaaagttgttggggtcaaaggagataaatccgatgatgagaggcaactcattggtaagctcagagtattcctagagaataagaggtacttcatcattgttgatgatatctggagtgcatctgcatgggaacatgtgaggttagctttgcctgagaacagtctttgtagtagaataattacaaccacacggaatgtcaatgtggcaaaatcatgctgctctggttttcaaggttctgtttacaacattcaacctctaaatgagcaagactctaagaagctatttctgaaaaggcttttccactcagactccaattttcctactcacttggaagaagtttcacatgcaatcattaaaaagtgccatggctttccattagctattatctgtttagctagtctgctagctagtaaatctgatacaaaagaccaatgggagcaagtgcacaattctctcagttctgcgtttagttcacaagggatgagcgatatactgctgcttagctattatgatctaccctatcatctgaagacatgcttgttgtatcttagtgtatttccagaggattataagattgatagagatgaactgatatggagatggatagctgaaggtttcatcactgaagtgaagggtcaaacattggaccaagttggagggagttactttaatgagcttatcaacagaaacatgattcaaccaattgacatcaaatatgatggtaccgcaaatgcttgtcgagtacatgatatggtgcttaaccttatcatatccatttcatctgaggaaaattttctcaccgtagttgacgagcaagggtataaatatttgggtaataagattcgacggctctcattccagtccaactctgttgagaatgatgtgaatgtagttcaaaagatcatggacaacttgtcacagctcccagatcaattcgggaacctccattatctacaaactctggatatacgtggcagtggaatcgaaaagtttccgccaaccgtggtccgtttgcataacttggctcgtctacttgttggcaataaagtgcaattgcctgatggtattggagatctgcaatccttacaggtgctgtcttctgctcggttgtataaacccctaaaacttgtggaagatctcaggagattgaccaaactaaggacgcttgagatagttcttcatggcagtgatacacttggtgctcatgagatgggaaggtatgaggaagctttggagtcttctcttactgtgttgggcaaacacaaaattcagtcactcgaaatttcatgttgtgattacttgagagataaattactggatttgttgtgctgcactgttccaaacattcagaagcttgtaatatctggcaattgcataaataggccttctcagcagatgctatctcttgttaatctcgctcacctagacatctatttccagaggattaagcaggaagatctcagtgtccttggaagcatatctactctgctctacctccggttgaaactgcattttgtgcctgacgaaaggctctgtatcagcagccaacaattccagagcctgatggagttcagattcatatattatgaggggggtggcttgaggatgttatttcaacaggaagcaatggcaaagcttcgacggttacagattcggtttagagcagaggaaatggagtctaatgcaggtttcgagttcagttttcatcacctctcaagcctggaggaccttcatgccacgattagttgttatagagccactagaagtagcgtggaggctgcagaagctgccatcaggaatgcagctagtatccatcctggacatctaaaagtttcaatcataagagagtgggaaagccgcatggcggggctcagagagagatga
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| Protein seq | MDGAAVSVATGVMGSLLAKLSALLGEERGLLKGVKGDIRFLRDELSTMNVFLMNMASVEENMDVQVKDWRNKVRELSYDIEDCIDLFMHKLNRGDDKVNIVLKMAKKIRMLWSRHQIANQIQELKARVKEESDRRLRYYFSECNAHVDGTKIDPRLPALYVEEEKLVGIHGPMEEIIELLMKEDGSGQKLKVVSIVGFGGLGKTTLANQVYNKIKDQFDCSAFISVSQSPNIKKILFDMLKDVTSRDNSDDDKQIKVVGVKGDKSDDERQLIGKLRVFLENKRYFIIVDDIWSASAWEHVRLALPENSLCSRIITTTRNVNVAKSCCSGFQGSVYNIQPLNEQDSKKLFLKRLFHSDSNFPTHLEEVSHAIIKKCHGFPLAIICLASLLASKSDTKDQWEQVHNSLSSAFSSQGMSDILLLSYYDLPYHLKTCLLYLSVFPEDYKIDRDELIWRWIAEGFITEVKGQTLDQVGGSYFNELINRNMIQPIDIKYDGTANACRVHDMVLNLIISISSEENFLTVVDEQGYKYLGNKIRRLSFQSNSVENDVNVVQKIMDNLSQLPDQFGNLHYLQTLDIRGSGIEKFPPTVVRLHNLARLLVGNKVQLPDGIGDLQSLQVLSSARLYKPLKLVEDLRRLTKLRTLEIVLHGSDTLGAHEMGRYEEALESSLTVLGKHKIQSLEISCCDYLRDKLLDLLCCTVPNIQKLVISGNCINRPSQQMLSLVNLAHLDIYFQRIKQEDLSVLGSISTLLYLRLKLHFVPDERLCISSQQFQSLMEFRFIYYEGGGLRMLFQQEAMAKLRRLQIRFRAEEMESNAGFEFSFHHLSSLEDLHATISCYRATRSSVEAAEAAIRNAASIHPGHLKVSIIREWESRMAGLRER
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.683538 | 0.598482 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0273300 | RBH | 0.314198 | 0.544434 | 0.288455 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17490 | RBH | 0.170020 | 0.361138 | 0.077371 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0273300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009050 | RBH | 0.0 | 0.0 | 0.963109 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009200 | SBH | 0.030515 | 0.000000 | 0.348653 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009180 | RBH | 0.0 | 0.0 | 0.923894 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009000 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008780 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0137900 | SBH | 0.460023 | 1.098302 | 0.9296885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008820 | SBH | 0.058034 | 0.255694 | 0.476529 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0151300 | SBH | 0.116274 | 2.3399135 | 0.2849305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008750 | SBH | 0.000000 | 0.213022 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008950 | SBH | 2.779466 | 12.357338 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008930 | SBH | 0.444415 | 0.0 | 0.405293 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009100 | SBH | 0.088794 | 0.569195 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008830 | SBH | 0.336031 | 0.323068 | 0.415770 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008750 | SBH | 0.0 | 0.0 | 0.750651 |
