Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0024670 | OGI:11082900 | 8/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:30222009-30223248 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcggcatcgtaacccaggaagtcaggtaatggcaacatcaaactttcctacaactttcctacgtaaattttatcttaatatactctgctattggcaattatatatatatccttaaaaatttttcataaattgcaggaatttgtgtttacatcaatagttacgattgatcgagtacaagaaaatattcaatggtggtacatgtcgtgcaatctttgtaataaaatagttattcagaaaaacgacaaataccattgcaggaactgcaataaatatccagaaaatacaacgcctaggtaagaatacttcatcttttgtaaataacaatacttatgtaataattttttttgcattaaccataatttcatattaggtaccgactacgactccaaataagtgatcatacgacatctacaagctgcactatatttgatgatgtggcacaaagcatgctagagacacctgtctcatcattactcaatttactagatggcaaaaacgacgaaattcctaacattattcaacaactctgtggaaaacaactcatcttcaagttcaagctcagtgaacaaaatctgactgaaggcacaccaaactatgttgtcaaaaagacatttgtgcctgattatatgcttgagaagcaatacctcattaataaggctgaagaggtaaagcaggctactactgattttttacaacacaaaatcttgaaaattttatttctgaaatgtttccgcattatgattttacaggagttaatggacgacgatgtggataacatactaaaacaagatagagagacaaatcaacaggtatttgaacatataatacaaattttcatttatttataatatatagcacatatgacaaatacttcattgcctttgcaggaacaaaccagcagcggccctcttattaaaaacagatccatctcactgctacccgtgaagcaagagctagaggatagtgaccaggaaatcacgagtgaagatgaactcacttcgtctgacaaacctcccagttgcaaacaaataagacggaggtcatacataatagaagacgattcagaagaggagagcaatgaaacaagtatgataaaatgcgtagatgcaaaagttcgaggcaaaaatgcaaaaggcgctcatgcaaaatccacaaaggcggaaatcagaaatgacacctacagccatgaaataaacaaatcagttgttgaagaatccatcaaggcaggaaaaagatag
More
|
||||||||||
| CDS seq | atgcggcatcgtaacccaggaagtcaggaatttgtgtttacatcaatagttacgattgatcgagtacaagaaaatattcaatggtggtacatgtcgtgcaatctttgtaataaaatagttattcagaaaaacgacaaataccattgcaggaactgcaataaatatccagaaaatacaacgcctaggtaccgactacgactccaaataagtgatcatacgacatctacaagctgcactatatttgatgatgtggcacaaagcatgctagagacacctgtctcatcattactcaatttactagatggcaaaaacgacgaaattcctaacattattcaacaactctgtggaaaacaactcatcttcaagttcaagctcagtgaacaaaatctgactgaaggcacaccaaactatgttgtcaaaaagacatttgtgcctgattatatgcttgagaagcaatacctcattaataaggctgaagaggagttaatggacgacgatgtggataacatactaaaacaagatagagagacaaatcaacaggaacaaaccagcagcggccctcttattaaaaacagatccatctcactgctacccgtgaagcaagagctagaggatagtgaccaggaaatcacgagtgaagatgaactcacttcgtctgacaaacctcccagttgcaaacaaataagacggaggtcatacataatagaagacgattcagaagaggagagcaatgaaacaagtatgataaaatgcgtagatgcaaaagttcgaggcaaaaatgcaaaaggcgctcatgcaaaatccacaaaggcggaaatcagaaatgacacctacagccatgaaataaacaaatcagttgttgaagaatccatcaaggcaggaaaaagatag
More
|
||||||||||
| Protein seq | MRHRNPGSQEFVFTSIVTIDRVQENIQWWYMSCNLCNKIVIQKNDKYHCRNCNKYPENTTPRYRLRLQISDHTTSTSCTIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQLCGKQLIFKFKLSEQNLTEGTPNYVVKKTFVPDYMLEKQYLINKAEEELMDDDVDNILKQDRETNQQEQTSSGPLIKNRSISLLPVKQELEDSDQEITSEDELTSSDKPPSCKQIRRRSYIIEDDSEEESNETSMIKCVDAKVRGKNAKGAHAKSTKAEIRNDTYSHEINKSVVEESIKAGKR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0024670 | OsKeNa_11g0024670.01 | Chr11 | 30222009 | 30223248 | + | NAM | ||
| CDS seq | atgcggcatcgtaacccaggaagtcaggaatttgtgtttacatcaatagttacgattgatcgagtacaagaaaatattcaatggtggtacatgtcgtgcaatctttgtaataaaatagttattcagaaaaacgacaaataccattgcaggaactgcaataaatatccagaaaatacaacgcctaggtaccgactacgactccaaataagtgatcatacgacatctacaagctgcactatatttgatgatgtggcacaaagcatgctagagacacctgtctcatcattactcaatttactagatggcaaaaacgacgaaattcctaacattattcaacaactctgtggaaaacaactcatcttcaagttcaagctcagtgaacaaaatctgactgaaggcacaccaaactatgttgtcaaaaagacatttgtgcctgattatatgcttgagaagcaatacctcattaataaggctgaagaggagttaatggacgacgatgtggataacatactaaaacaagatagagagacaaatcaacaggaacaaaccagcagcggccctcttattaaaaacagatccatctcactgctacccgtgaagcaagagctagaggatagtgaccaggaaatcacgagtgaagatgaactcacttcgtctgacaaacctcccagttgcaaacaaataagacggaggtcatacataatagaagacgattcagaagaggagagcaatgaaacaagtatgataaaatgcgtagatgcaaaagttcgaggcaaaaatgcaaaaggcgctcatgcaaaatccacaaaggcggaaatcagaaatgacacctacagccatgaaataaacaaatcagttgttgaagaatccatcaaggcaggaaaaagatag
More
|
|||||||
| Protein seq | MRHRNPGSQEFVFTSIVTIDRVQENIQWWYMSCNLCNKIVIQKNDKYHCRNCNKYPENTTPRYRLRLQISDHTTSTSCTIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQLCGKQLIFKFKLSEQNLTEGTPNYVVKKTFVPDYMLEKQYLINKAEEELMDDDVDNILKQDRETNQQEQTSSGPLIKNRSISLLPVKQELEDSDQEITSEDELTSSDKPPSCKQIRRRSYIIEDDSEEESNETSMIKCVDAKVRGKNAKGAHAKSTKAEIRNDTYSHEINKSVVEESIKAGKR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.330606 | 3.287200 | 5.198195 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g47400 | RBH | 2.069226 | 2.269226 | 0.899084 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024690 | RBH | 1.031865 | 9.949595 | 5.943752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002510 | SBH | 0.000000 | 0.341345 | 0.355932 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000430 | SBH | 0.622973 | 1.750364 | 5.925358 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000430 | SBH | 0.087940 | 0.067654 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024500 | RBH | 10.120822 | 0.000000 | 16.889252 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0446000 | RBH | 3.5995155 | 7.3176225 | 6.568434 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0033600 | SBH | 1.277155 | 1.7857565 | 4.5899985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000280 | SBH | 0.000000 | 0.239783 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000410 | SBH | 0.097151 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000410 | SBH | 0.149886 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024410 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024390 | RBH | 0.557414 | 0.898667 | 4.080621 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024600 | RBH | 2.431698 | 5.411269 | 11.289800 |
