Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g47400 | OGI:11082900 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:28515606-28516845 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCGGCATCGTAACCCAGGAAGTCAGGTAATGGCAACATCAAACTTTCCTACAACTTTCCTACGTAAATTTTATCTTAATATACTCTGCTATTGGCAATTATATATATATCCTTAAAAAATTTTCATAAATTGCAGGAATTTGTGTTTACATCAATAGTTACGATTGATCGAGTACAAGAAAATATTCAATGGTGGTACATGTCGTGCAATCTTTGTAATAAAATAGTTATTCAGAAAAACGACAAATACCATTGCAGGAACTGCAATAAATATCCAGAAAATACAACGCCTAGGTAAGAATACTTCATCTTTTGTAAATAACAATACTTATGTAATAATTTTTTTTGCATTAACCATAATTTCATATTAGGTACCGACTACGACTCCAAATAAGTGATCATACGACATCTACAAGCTGCACTATATTTGATGATGTGGCACAAAGCATGCTAGAGACACCTGTCTCATCATTACTCAATTTACTAGATGGCAAAAACGACGAAATTCCTAACATTATTCAACAACTCTGTGGAAAACAACTCATCTTCAAGTTCAAGCTCAGTGAACAAAATCTGACTGAAGGCACACCAAACTATGTTGTCAAAAAGACATTTGTGCCTGATTATATGCTTGAGAAGCAATACCTCATTAATAAGGCTGAAGAGGTAAAGCAGGCTACTACTGATTTTTTACAACACAAAATCTTGAAAATTTTATTTCTGAAATGTTTCCGCATTATGATTTTACAGGAGTTAATGGACGACGATGTGGATAACATACTAAAACAAGATAGAGAGACAAATCAACAGGTATTTGAACATATAATACAAATTTTCATTTATTTATAATATATAGCACATATGACAAATACTTCATTGCCTTTGCAGGAACAAACCAGCAGCGGCCCTCTTATTAAAAACAGATCCATCTCACTGCTACCCGTGAAGCAAGAGCTAGAGGATAGTGACCAGGAAATCACGAGTGAAGATGAACTCACTTCGTCTGACAAACCTCCCAGTTGCAAACAAATAAGACGGAGGTCATACATAATAGAAGACGATTCAGAAGAGGAGAGCAATGAAACAAGTATGATAAAATGCGTAGATGCAAAAGTTCGAGGCAAAAATGCAAAAGGCGCTCATGCAAAATCCACAAAGGCGGAAATCAGAAATGACACCTACAGCCATGAAATAAACAAATCAGTTGTTGAAGAATCCATCAAGGCAGGAAAAAGATAG
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| CDS seq | ATGCGGCATCGTAACCCAGGAAGTCAGGAATTTGTGTTTACATCAATAGTTACGATTGATCGAGTACAAGAAAATATTCAATGGTGGTACATGTCGTGCAATCTTTGTAATAAAATAGTTATTCAGAAAAACGACAAATACCATTGCAGGAACTGCAATAAATATCCAGAAAATACAACGCCTAGGTACCGACTACGACTCCAAATAAGTGATCATACGACATCTACAAGCTGCACTATATTTGATGATGTGGCACAAAGCATGCTAGAGACACCTGTCTCATCATTACTCAATTTACTAGATGGCAAAAACGACGAAATTCCTAACATTATTCAACAACTCTGTGGAAAACAACTCATCTTCAAGTTCAAGCTCAGTGAACAAAATCTGACTGAAGGCACACCAAACTATGTTGTCAAAAAGACATTTGTGCCTGATTATATGCTTGAGAAGCAATACCTCATTAATAAGGCTGAAGAGGAGTTAATGGACGACGATGTGGATAACATACTAAAACAAGATAGAGAGACAAATCAACAGGAACAAACCAGCAGCGGCCCTCTTATTAAAAACAGATCCATCTCACTGCTACCCGTGAAGCAAGAGCTAGAGGATAGTGACCAGGAAATCACGAGTGAAGATGAACTCACTTCGTCTGACAAACCTCCCAGTTGCAAACAAATAAGACGGAGGTCATACATAATAGAAGACGATTCAGAAGAGGAGAGCAATGAAACAAGTATGATAAAATGCGTAGATGCAAAAGTTCGAGGCAAAAATGCAAAAGGCGCTCATGCAAAATCCACAAAGGCGGAAATCAGAAATGACACCTACAGCCATGAAATAAACAAATCAGTTGTTGAAGAATCCATCAAGGCAGGAAAAAGATAG
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| Protein seq | MRHRNPGSQEFVFTSIVTIDRVQENIQWWYMSCNLCNKIVIQKNDKYHCRNCNKYPENTTPRYRLRLQISDHTTSTSCTIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQLCGKQLIFKFKLSEQNLTEGTPNYVVKKTFVPDYMLEKQYLINKAEEELMDDDVDNILKQDRETNQQEQTSSGPLIKNRSISLLPVKQELEDSDQEITSEDELTSSDKPPSCKQIRRRSYIIEDDSEEESNETSMIKCVDAKVRGKNAKGAHAKSTKAEIRNDTYSHEINKSVVEESIKAGKR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g47400 | LOC_Os11g47400.1 | Chr11 | 28515606 | 28516845 | + | MSU_osa1r7 | ||
| CDS seq | ATGCGGCATCGTAACCCAGGAAGTCAGGAATTTGTGTTTACATCAATAGTTACGATTGATCGAGTACAAGAAAATATTCAATGGTGGTACATGTCGTGCAATCTTTGTAATAAAATAGTTATTCAGAAAAACGACAAATACCATTGCAGGAACTGCAATAAATATCCAGAAAATACAACGCCTAGGTACCGACTACGACTCCAAATAAGTGATCATACGACATCTACAAGCTGCACTATATTTGATGATGTGGCACAAAGCATGCTAGAGACACCTGTCTCATCATTACTCAATTTACTAGATGGCAAAAACGACGAAATTCCTAACATTATTCAACAACTCTGTGGAAAACAACTCATCTTCAAGTTCAAGCTCAGTGAACAAAATCTGACTGAAGGCACACCAAACTATGTTGTCAAAAAGACATTTGTGCCTGATTATATGCTTGAGAAGCAATACCTCATTAATAAGGCTGAAGAGGAGTTAATGGACGACGATGTGGATAACATACTAAAACAAGATAGAGAGACAAATCAACAGGAACAAACCAGCAGCGGCCCTCTTATTAAAAACAGATCCATCTCACTGCTACCCGTGAAGCAAGAGCTAGAGGATAGTGACCAGGAAATCACGAGTGAAGATGAACTCACTTCGTCTGACAAACCTCCCAGTTGCAAACAAATAAGACGGAGGTCATACATAATAGAAGACGATTCAGAAGAGGAGAGCAATGAAACAAGTATGATAAAATGCGTAGATGCAAAAGTTCGAGGCAAAAATGCAAAAGGCGCTCATGCAAAATCCACAAAGGCGGAAATCAGAAATGACACCTACAGCCATGAAATAAACAAATCAGTTGTTGAAGAATCCATCAAGGCAGGAAAAAGATAG
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| Protein seq | MRHRNPGSQEFVFTSIVTIDRVQENIQWWYMSCNLCNKIVIQKNDKYHCRNCNKYPENTTPRYRLRLQISDHTTSTSCTIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQLCGKQLIFKFKLSEQNLTEGTPNYVVKKTFVPDYMLEKQYLINKAEEELMDDDVDNILKQDRETNQQEQTSSGPLIKNRSISLLPVKQELEDSDQEITSEDELTSSDKPPSCKQIRRRSYIIEDDSEEESNETSMIKCVDAKVRGKNAKGAHAKSTKAEIRNDTYSHEINKSVVEESIKAGKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.069226 | 2.269226 | 0.899084 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g63870 | RBH | 4.615403 | 4.461754 | 2.141360 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024690 | RBH | 1.031865 | 9.949595 | 5.943752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024670 | RBH | 0.330606 | 3.287200 | 5.198195 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024500 | RBH | 10.120822 | 0.000000 | 16.889252 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0446000 | RBH | 3.5995155 | 7.3176225 | 6.568434 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0033600 | SBH | 1.277155 | 1.7857565 | 4.5899985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002400 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002560 | SBH | 0.075790 | 0.585201 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0001060 | SBH | 0.053275 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024410 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024390 | RBH | 0.557414 | 0.898667 | 4.080621 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024600 | RBH | 2.431698 | 5.411269 | 11.289800 |
