Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0000410 | OGI:11000910 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:368105-370600 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcaagttatggtgtacaagaagttaagtgaactaacaactagaggacatacatggaacatcaaagtaaaagtcatgagattatgggactcggtcaattcagcaacagatgaattactcagtcttgatatgatcctaatggatgaacaggttttatttcttttacttacctaaacaatcgatcaagtttatcttccataaacaataactgtttttttattttccataattaatactccctccatctatttttgatagtcatatttccaaatctaaaaaatctatttttgataggcatatttcaatccaacaacctatcatcttaatgactctctcggatttaatgcatgactcttcattcttcctcacaagattggttgcatggacatcgagaaatgtaaatattaatgaatcgcttgtttacgagaaatgactagtagtatgtttaaatagatgataagtagaatcacttatcattggtctgtgtgtcaagataaaatatgactatcaaaagtagatggagggattaattgttttttttatcaacagggagatgtaattcatgcatctatatggaagaaaccgatagacaactacaaaacacaaatcaatgaaagctcagtctatgtattcggtaacttcaaagttcaagaatcccaaaaatatcgtccagtttgcaatgaccttaaaatcactttcatgtacaacacaaaggtcaaacaagtcaaagaaacagctgaaagttttcctgagtattactttgattttgctagcattgacacattacaagaccgtgcaaataaagaccaacatttatcaggtaaaatctattgcttttttatctttattttaacatatgatattgttattagttgattttcaatccttcaaatgttgcagacgtcattggactactaacccgaatgaaaccaattgaaacaaggatgacaaggaaaaacacccctaacccacgacttgcagaaattcgtgagattgaacttctactattagggtaaatattgttatggccaatatttttttaaccattacaaactattttcatgctattcaaaatctataatatttatgccaattgaaatttacggggggataagatcagattaacattgtgggggcaattggctcgattttttagcgaagatgtaattggcaaccaaacagttgtcattgttacatcaacaacagtgcaagaatatataggtaataacacaaactatggaaatcagattgttctttttatttatataatataaactaactaataaccatgattatataggtttatctctaaggtcaagcagtgccacgagaatatatacaaatctacacatacgtgagacatggacacttattgacaggtatatgttattttaatactgatttttagtaacataatacaaatccttctttgattcaaatatttatgcctcatagacaattctccgaagaaacaataccaaaaatgatggaagtagataagagcacacaaggaacaagggaggagcaaatgttctacaacagaaaaacactcaaggatataacagaaatgcggcatggcaacccaggaagtcaggtaattcctacataaattttatcttaatatacttggcaattatatatatccttaaaaaatttcataaattgcaggaatttgtgtttacatcaaaagttacgattgatcgagtacaagaaaatattcaatggtggtacatgtcgtgcaatctttgtaataaaatagttattcagaaaaacgataaataacattgcaggaactgcaataaatatccagaaaatacaacgcttaggtaagattacttcttttttttgtaaatagtagtacttacgtaataattttttggcattaaccacaattccatattaggtaccaactacgactccaaataagtgatcacacgacatctacaagctgtactatatttgatgatgtggcacaaagcatgctagagacacctgtctcatcattactcaatttactagatggcaaaaacgacgaaattcctaacattattcaacaactctgtggaaaacaactcatcttcaagttcaagctcagtgaacaaaatctgactgaaggcacaccaaactatgttgtcaaaaggacatttgtgcctgattatatgcttgagaagcaatacctcattaataaggctgaagaggtaaagcaggctactactgattttttacaacacaaaatcttgaaaattttatttctgaaatgtttccacattatgattttacaggagttaatggacgacgatgtggataacatactaaaacaagatagagagacagatcaacaggtatttgaacatataatacaaatattcatttatttataatatatagcacatatgacaaatactttattgcctttgaaggaacaaaccagcaggggccctcttattaaaaaacagatccatctcactgctacccgtgaagcaagagctataggatag
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| CDS seq | atggtgtacaagaagttaagtgaactaacaactagaggacatacatggaacatcaaagtaaaagtcatgagattatgggactcggtcaattcagcaacagatgaattactcatttgcaatgaccttaaaatcactttcatgtacaacacaaaggtcaaacaagtcaaagaaacagctgaaagttttcctgagtattactttgattttgctagcattgacacattacaagaccgtgcaaataaagaccaacatttatcagacgtcattggactactaacccgaatgaaaccaattgaaacaaggatgacaaggaaaaacacccctaacccacgacttgcagaaattcgtgagattgaacttctactattaggattaacattgtgggggcaattggctcgattttttagcgaagatgtaattggcaaccaaacagttgtcattgttacatcaacaacagtgcaagaatatataggtttatctctaaggtcaagcagtgccacgagaatatatacaaatctacacatacgtgagacatggacacttattgacagacaattctccgaagaaacaataccaaaaatgatggaagtagataagagcacacaaggaacaagggaggagcaaatgttctacaacagaaaaacactcaaggatataacagaaatgcggcatggcaacccaggaagtcaggaatttgtgtttacatcaaaagttacgattgatcgagtacaagaaaatattcaatggtggtaccaactacgactccaaataagtgatcacacgacatctacaagctgtactatatttgatgatgtggcacaaagcatgctagagacacctgtctcatcattactcaatttactagatggcaaaaacgacgaaattcctaacattattcaacaactctgtggaaaacaactcatcttcaagttcaagctcagtgaacaaaatctgactgaaggcacaccaaactatgttgtcaaaaggacatttgtgcctgattatatgcttgagaagcaatacctcattaataaggctgaagaggagttaatggacgacgatgtggataacatactaaaacaagatagagagacagatcaacaggaacaaaccagcaggggccctcttattaaaaaacagatccatctcactgctacccgtgaagcaagagctataggatag
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| Protein seq | MVYKKLSELTTRGHTWNIKVKVMRLWDSVNSATDELLICNDLKITFMYNTKVKQVKETAESFPEYYFDFASIDTLQDRANKDQHLSDVIGLLTRMKPIETRMTRKNTPNPRLAEIREIELLLLGLTLWGQLARFFSEDVIGNQTVVIVTSTTVQEYIGLSLRSSSATRIYTNLHIRETWTLIDRQFSEETIPKMMEVDKSTQGTREEQMFYNRKTLKDITEMRHGNPGSQEFVFTSKVTIDRVQENIQWWYQLRLQISDHTTSTSCTIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQLCGKQLIFKFKLSEQNLTEGTPNYVVKRTFVPDYMLEKQYLINKAEEELMDDDVDNILKQDRETDQQEQTSRGPLIKKQIHLTATREARAIG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0000410 | OsLiXu_11g0000410.01 | Chr11 | 368105 | 370600 | + | NAM | ||
| CDS seq | atggtgtacaagaagttaagtgaactaacaactagaggacatacatggaacatcaaagtaaaagtcatgagattatgggactcggtcaattcagcaacagatgaattactcatttgcaatgaccttaaaatcactttcatgtacaacacaaaggtcaaacaagtcaaagaaacagctgaaagttttcctgagtattactttgattttgctagcattgacacattacaagaccgtgcaaataaagaccaacatttatcagacgtcattggactactaacccgaatgaaaccaattgaaacaaggatgacaaggaaaaacacccctaacccacgacttgcagaaattcgtgagattgaacttctactattaggattaacattgtgggggcaattggctcgattttttagcgaagatgtaattggcaaccaaacagttgtcattgttacatcaacaacagtgcaagaatatataggtttatctctaaggtcaagcagtgccacgagaatatatacaaatctacacatacgtgagacatggacacttattgacagacaattctccgaagaaacaataccaaaaatgatggaagtagataagagcacacaaggaacaagggaggagcaaatgttctacaacagaaaaacactcaaggatataacagaaatgcggcatggcaacccaggaagtcaggaatttgtgtttacatcaaaagttacgattgatcgagtacaagaaaatattcaatggtggtaccaactacgactccaaataagtgatcacacgacatctacaagctgtactatatttgatgatgtggcacaaagcatgctagagacacctgtctcatcattactcaatttactagatggcaaaaacgacgaaattcctaacattattcaacaactctgtggaaaacaactcatcttcaagttcaagctcagtgaacaaaatctgactgaaggcacaccaaactatgttgtcaaaaggacatttgtgcctgattatatgcttgagaagcaatacctcattaataaggctgaagaggagttaatggacgacgatgtggataacatactaaaacaagatagagagacagatcaacaggaacaaaccagcaggggccctcttattaaaaaacagatccatctcactgctacccgtgaagcaagagctataggatag
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| Protein seq | MVYKKLSELTTRGHTWNIKVKVMRLWDSVNSATDELLICNDLKITFMYNTKVKQVKETAESFPEYYFDFASIDTLQDRANKDQHLSDVIGLLTRMKPIETRMTRKNTPNPRLAEIREIELLLLGLTLWGQLARFFSEDVIGNQTVVIVTSTTVQEYIGLSLRSSSATRIYTNLHIRETWTLIDRQFSEETIPKMMEVDKSTQGTREEQMFYNRKTLKDITEMRHGNPGSQEFVFTSKVTIDRVQENIQWWYQLRLQISDHTTSTSCTIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQLCGKQLIFKFKLSEQNLTEGTPNYVVKRTFVPDYMLEKQYLINKAEEELMDDDVDNILKQDRETDQQEQTSRGPLIKKQIHLTATREARAIG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.149886 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01460 | RBH | 0.061186 | 0.418906 | 0.934809 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000420 | RBH | 0.386709 | 0.549713 | 2.321344 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000430 | RBH | 0.097011 | 0.000000 | 1.741960 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000430 | RBH | 0.622973 | 1.750364 | 5.925358 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000430 | RBH | 0.087940 | 0.067654 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000410 | RBH | 3.328699 | 4.578051 | 6.117254 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0005100 | RBH | 0.536002 | 1.4858875 | 3.785048 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000420 | RBH | 0.083465 | 0.369017 | 0.553602 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0005300 | RBH | 1.8542775 | 2.9723765 | 5.599046 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000280 | RBH | 0.000000 | 0.239783 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000410 | RBH | 0.097151 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000410 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000410 | RBH | 0.000000 | 1.927409 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000430 | RBH | 0.103470 | 0.550621 | 1.699439 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000410 | RBH | 0.000000 | 7.637857 | 3.670040 |
