Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0016390 | OGI:06026000 | 12/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:21034922-21035488 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacctttgttgatctggtagctgctgaggacgcaatcggtgcaacctacatctacaatcctgtacagcccatggtaacgcccgccaagtgtttgacaaattgctccaaccccaataacatcctagacctcaccgtggcagcagtggttatgtgcacctccacttctctggcctccatggacctggaagttggtaaggacgtcgcctgcaccactgaaattgatggccctgactgtcacaaggagacgcacaccaaatgttcaatgttaggccttgatgtcaagggtggcgcagaccacgtcggggacgcgttcctgacaatgacgggtgtggccaagtctgttccaatatctatcgagtcaattgacatcttctcggcaaggttagtcagcgacctcaagcaggacataccaacgcccaccgggtgtttgttgagaatccctcgatatgacagcaagacacagttcagtaaaaagctaaggctggaggggattgaattgaagccatggccacctccaacctacagtggagtgattagcggactggagttccgaccaatgccctag
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| CDS seq | atgacctttgttgatctggtagctgctgaggacgcaatcggtgcaacctacatctacaatcctgtacagcccatggtaacgcccgccaagtgtttgacaaattgctccaaccccaataacatcctagacctcaccgtggcagcagtggttatgtgcacctccacttctctggcctccatggacctggaagttggtaaggacgtcgcctgcaccactgaaattgatggccctgactgtcacaaggagacgcacaccaaatgttcaatgttaggccttgatgtcaagggtggcgcagaccacgtcggggacgcgttcctgacaatgacgggtgtggccaagtctgttccaatatctatcgagtcaattgacatcttctcggcaaggttagtcagcgacctcaagcaggacataccaacgcccaccgggtgtttgttgagaatccctcgatatgacagcaagacacagttcagtaaaaagctaaggctggaggggattgaattgaagccatggccacctccaacctacagtggagtgattagcggactggagttccgaccaatgccctag
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| Protein seq | MTFVDLVAAEDAIGATYIYNPVQPMVTPAKCLTNCSNPNNILDLTVAAVVMCTSTSLASMDLEVGKDVACTTEIDGPDCHKETHTKCSMLGLDVKGGADHVGDAFLTMTGVAKSVPISIESIDIFSARLVSDLKQDIPTPTGCLLRIPRYDSKTQFSKKLRLEGIELKPWPPPTYSGVISGLEFRPMP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0016390 | OsKeNa_11g0016390.01 | Chr11 | 21034922 | 21035488 | + | NAM | ||
| CDS seq | atgacctttgttgatctggtagctgctgaggacgcaatcggtgcaacctacatctacaatcctgtacagcccatggtaacgcccgccaagtgtttgacaaattgctccaaccccaataacatcctagacctcaccgtggcagcagtggttatgtgcacctccacttctctggcctccatggacctggaagttggtaaggacgtcgcctgcaccactgaaattgatggccctgactgtcacaaggagacgcacaccaaatgttcaatgttaggccttgatgtcaagggtggcgcagaccacgtcggggacgcgttcctgacaatgacgggtgtggccaagtctgttccaatatctatcgagtcaattgacatcttctcggcaaggttagtcagcgacctcaagcaggacataccaacgcccaccgggtgtttgttgagaatccctcgatatgacagcaagacacagttcagtaaaaagctaaggctggaggggattgaattgaagccatggccacctccaacctacagtggagtgattagcggactggagttccgaccaatgccctag
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| Protein seq | MTFVDLVAAEDAIGATYIYNPVQPMVTPAKCLTNCSNPNNILDLTVAAVVMCTSTSLASMDLEVGKDVACTTEIDGPDCHKETHTKCSMLGLDVKGGADHVGDAFLTMTGVAKSVPISIESIDIFSARLVSDLKQDIPTPTGCLLRIPRYDSKTQFSKKLRLEGIELKPWPPPTYSGVISGLEFRPMP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0491600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35970 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0491600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006580 | RBH | 0.000000 | 0.000000 | 0.512906 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019600 | RBH | 0.041735 | 0.000000 | 0.297891 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016500 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015910 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018860 | SBH | 4.131951 | 7.532061 | 6.898933 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0321200 | SBH | 0.6577875 | 0.603193 | 0.13329 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018730 | SBH | 0.245922 | 0.458318 | 0.901623 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0342800 | SBH | 0.285678 | 0.7415595 | 2.579632 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0016790 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019200 | SBH | 0.352914 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019120 | SBH | 2.278904 | 11.002890 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006510 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019330 | SBH | 0.0 | 2.302420 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G016190 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018660 | SBH | 1.016077 | 7.579648 | 6.121644 |
