Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0018660 | OGI:12064660 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:23098236-23104009 | ||||||||
| Gene Symbol | ALDH12B1, OsALDH12B1 | ||||||||||
| DNA seq | ttacacatgaagcaaattggcaacataccaagcatcagcataggaaatatctacagtttcactaactgcaagattttacacattatccatacattgtatccatcaccaaagagtcaaaaactacattgaacagcatatatagggtatttgtacattgttccttcagaagaagaacagcatatgatgctataaaatgctgaaatccatgaagaccagaggaacctatccaaaagaacatcccaacatttgccactgcccaccacgcaccaaaggagcacctgaagaagagcacaggatgtgcttcaaggtggaatgcagcaaatgtggcaagttcacctggaatggatgtggtaaacatgtcgcatccgtttacgactgtatcgagaaggggaaacattgtacttgcaagccatggccgggtgttgacacaaaggcagatggatccacttcgaaccccaaagaaggtgttagagacccactcaacaatgtaatttcagaaatagtagtgccaaatccaacacagggaacaaccaagtctattacaatagtggagtggttttgaggtggaagatggaaggatacaagggctagaaggttctagtagcttctagactagtagagaagaagggagatagaggagagatcgacaaagaggccagccagcctccaggtcgccgccaccgccgttcgccgccttggccaatcaatctgttcgtcccctcctggaagtgctgctactacttatatatggttgcctcttgggcttgcttggacttcttggaaagtagctgatccagcccatattgcagcccacatggctcctaacattctccttcccttgaaattcggcttgtccctaagccgatgactcgaagctgtgcaagcttcacccacttgatctcccctgttactatttctcttgtaatgtagccaatatgaccataggaaacacaaccagccaatgcttgtaatagcccacagtgaaagcctagttccttgtttaatagctaatgccaaatgagagccgcctggatcccatggaacactcaataaattgacaattactaagtttgcataaccatattgctgcaggaacataacaaccttcatgtccttgttaacagcaaatgcacacaaccaaagatcacgcttcttctgtaccactccactgactgaaaattctaaagtccaaactgtattgccttcatcctccattacatcaataagcagtctaggagcatcagcagcatggttttctttggcagtgatgatctcataatcacttggcttaatgcaatgtgctctcatgcaggtagttaattgacaattttctggttgtagagcgtagctaccaatctgacccatctcagcatctggatcccacactaatggcactaacagtacttgcatgagttccaatgggttcacaattagcatactgttcttgtattgtttagagttccaatcaagcaatccaccaaaagaccaaccattgtgcatgaatagaatagactgaggatagcacttctgaacactacaaccatacgaatcccggtcacagatcaattcaatgtaattgacctcttgaaccactatacccagtatattccaatcaaacacaacacctttcaagtctgtagcccatttctttgctacatgtgaagtcctagtgaaaatattttccatgtaaagtggtctcacaatatgcagtatggctattagtaaatggaatgtgctaattgcatttgggccatacaaccaacaacagccaatacagccttgtccaaggtgagtgtcaggtacagcaattgattgagccaaaaagtgtaccttatcttcaccaaagttttccaagaattttttagcaacttgagcttctatataagcttgatgatggctctttggagatatatcttggataagtttaacaaacaatcctggaataggccgcataatgctcaggtactgtttagaatcccaaccattcaacatcttcattttagccttagtggaccatatcctccttgacataagctgttgtgatatcatgcttactgaatgctgaaggagaccactcaagtgcagctcatatagcttaggaacaaacaatgaccattcttcacctaactcactccaaatcgctttccagaattttgaaattgcttttcgatccaccaggatatgggtgaagccattgatcaataagggcaggatgtcattctcatgtggtgggggccacagttccaactcagcccattcagttggtggtggccaaggatcaagtagatgttcttcaagccaacaatagatgaatgctggccagggcattggtcggaactccagtccgctaatcactccactgtaggttggaggtggccatggcttcaattcaatcccctccagccttagctttttactgaactgtgtcttgctgtcatatcgagggattctcaacaaacacccggtgggcgttggtatgtcctgcttgaggtcgctgaccaaccttgccgagaagatgtcaattgactcgatagatattggaacagacttggacacacccgacattgtcaggaacgcgcccccgacgtggtctgcgccacccttgacatcaaggcctaacatcgaacatttggtgtgcgtctccttgtgacagtcagggccatcaatttcagtggtgcaggcgacgtccttaccaacttccaggtccatggaggccagagaagtggaggtgcacgtaaccactgctgccacggtgaggtctaggatgttattggggttggagcaatttgtcaaacacttggcgggcgttaccatgggctgtacaggattgtagatgtaggttgcaccgattgcgtcctcagcaaataccagatcaatagaggtcatagaagtggtggcacacgtaacaaccacatcaacagcgagattgggctcgacattggggctgaagcattctgtcgaacacatagtgggcgtcatcttgtactgcttgtttccaaccaaaaaatgtgagtcttcagtgttattctgtacatggggaatccatgatgctaacgctgccttgagagattggaaatcagctctccttgtctgctctgcctccacccgccttcgttcaaactcctccattcgcctcaaaatcatatccaacttatgttcacttgccatggcagcttgcttggtgaactcagtggggattgttggctctgataccagattgttagagacccacccaacaatataatttcagaaatagcagtgccaaatctaacacagggaacaaccaagtctgttacaatagtggagtggttttgaggtggaagatggaaggatacaagggctagaaggttctagtagcttctagactagtagagaagaagggagatagaggagagatcgacaaagaggccagccagcctccaggtcaccgccgccgctattcgccgccttggccaatcaatctgttcgtcccctcctagaagtgctactgctacttatatatggttgcctcttgggcttgcttggacttctttggaaagtagctgatccagcccatattgcagcccacatggctcctaacagaaggttaattggcttggctgaacttctcacctctcctacatattaccatcatcttcaaaactgatagcgttatctgattggcaggtgaagcaaaagtttgagcttgcgcacatggatgactagttctgcagttttggtgatattagagtgaaggagacttcactttgatctaattatgtttgcctctctatccacctgtactggtttctgacttcaatgcaagttgaatttcaagaatccaataaaatattctgcagttaaataaaatttttgctttcctgaagatcccagttagggttgtgatataaagagagctggaaaacttcagcaaactctttaagcagggttctgtaggctttatcgatcaatgctgtttcgtctatctcttttccatcagatgctatttgcaatatctctttgatgctcccaacgccacgatcttttatgccgcagggaacaatgagttgaaatggtgttaactcagtggttacgttgagtgctagaccatgatatgctatccatcgtgagacatgaattcctattgctgcaactttcttatctcctaaaaagtaaatagaggggatatattagtaacacgtcattatatctcacagaaaattcaaaataatatcacaatttccaaaaggatagtaccataccaacccagacaccggttagaccttctaccctagatgccttgatggaaaatgcggactgaagggcacgaatgatcacctcttcaagtgatctaaagtaccaatgaaggtccatttgatgatatcgcaagttgataatcgggtacattacaagctaaggagacaataaaatgactgtcagaagcacagatattagctataaacgaatttcatgcaaagattgagtatccaataggaatagaagccacaatcttccgggaaaaccaggattttatcacatattttgataaccagattaaccacagctagggatatacatgaagtttaactaggtagaatacatcataaattgtagcaaaacaagccacaatcttctgccttagtgaaaatcaagatttcatcacattctggtaaccagattgcacagctaggcctatacttgaagttttaactatctatataactagatgtctagatgataatggagaaccatacagcttattcacaagtaaaagaaatgaaccacgattcgtgatatgtaacaatatgagcttcactgacattatggtacatacctgtccaggaccatgatatgtcacctccccaccacggtcaatacggtgaacctcaaaaggagcatctttaacatcgaaatggaggtagtcctcggtgctgtcagtgcctagcgtataaactggtggatgctgcagcgcgattaaggtgtcggagtgatcttcatccgtgcctaccaaccctttcctccttgtcacaatggactgctgccaagcccaagattccgcaaatggaacgatgtgctgatggaggtcaaataactcacacctgttgaatacaaccacatagtcagaacaatcagtggcaagcaggcaacacaattttctagtagaatgccacaattctactacacatcaggttcaaattcagtttgctgcttcccaaaaaacagtgaagctttgagagttctaaagtttgtacagaacaactctttgagcaaaacaaagccatttgtggattgttcgtgctgatgaattcaaccgaatgaccagcaagaccggttaaatcaaatcataaaccagaaatacatcatcaactaatacaatcgaaacaacgacactgacacggtttcttccttcccatttggagcaataaattaggcattcgaaagaaactaggtatactaggagattcacggggcaccaaacctcctcctgctcacgccaccagcagcggagccggacaccagagcggcgtcccttggcgcggcgtggaagcatccggcgggtggtaggctgggccttctcccccgggagcgcggtggcggcgaggaggccgccctggagaccacggcggggaagggcagggcggcgcagtgggagccataggagcagggcaaggccatgcccgccctcctctcgcggtggggcggtgacttgtagggtggcgctgcgccggcagccagcggcggcgggcggagtcaccgaggaggcgaggaggagaaggccatggcggccgtctagc
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| CDS seq | atgacctctattgatctggtatttgctgaggacgcaatcggtgcaacctacatctacaatcctgtacagcccatggtaacgcccgccaagtgtttgacaaattgctccaaccccaataacatcctagacctcaccgtggcagcagtggttacgtgcacctccacttctctggcctccatggacctggaagttggtaaggacgtcgcctgcaccactgaaattgatggccctgactgtcacaaggagacgcacaccaaatgttcgatgttaggccttgatgtcaagggtggcgcagaccacgtcgggggcgcgttcctgacaatgtcgggtgtgtccaagtctgttccaatatctatcgagtcaattgacatcttctcggcaaggttggtcagcgacctcaagcaggacataccaacgcccaccgggtgtttgttgagaatccctcgatatgacagcaagacacagttcagtaaaaagctaaggctggaggggattgaattgaagccatggccacctccaacctacagtggagtgattagcggactggagttccgaccaatgccctggccagcattcatctattgttggcttgaagaacatctacttgatccttggccaccaccaactgaatgggctgagttggaactgtggcccccaccacatgagaatgacatcctgcccttattgatcaatggcttcacccatatcctggtggatcgaaaagcaatttcaaaattctggaaagcgatttggagtgagttaggtgaagaatggtcattgtttgttcctaagctatatgagctgcacttgagtggtctccttcagcattcagtaagcatgatatcacaacagcttatgtcaaggaggatatggtccactaaggctaaaatgaagatgttgaatggttgggattctaaacagtacctgagcattatgcggcctattccaggattgtttgttaaacttatccaagatatatctccaaagagccatcatcaagcttatatagaagctcaagttgctaaaaaattcttggaaaactttggtgaagataaggtacactttttggctcaatcaattgctgtacctgacactcaccttggacaaggctgtattggctgttgttggttgtatggcccaaatgcaattagcacattccatttactaatagccatactgcatattgtgagaccactttacatggaaaatattttcactaggacttcacatgtagcaaagaaatgggctacagacttgaaaggtgttgtgtttgattggaatatactgggtatagtggttcaagaggtcaattacattgaattgatctgtgaccgggattcgtatggttgtagtgttcagaagtgctatcctcagtctattctattcatgcacaatggttggtcttttggtggattgcttgattggaactctaaacaatacaagaacagtatgctaattgtgaacccattggaactcatgcaagtactgttagtgccattagtgtgggatccagatgctgagatgggtcagattggtagctacgctctacaaccagaaaattgtcaattaactacctgcatgagagcacattgcattaagccaagtgattatgagatcatcactgccaaagaaaaccatgctgctgatgctcctagactgcttattgatgtaatggaggatgaaggcaatacagtttggactttagaattttcagtcagtggagtggtacagaagaagcgtgatctttggttgtgtgcatttgctgttaacaaggacatgaaggttgttatgttcctgcagcaatatggttatgcaaacttagtaattgtcaatttattgagtgttccatgggatccaggcggctctcatttggcattagctattaaacaaggaactaggctttcactgtgggctattacaagcattggctggttgtgtttcctatggtgctcctttggtgcgtggtgggcagtggcaaatgttgggatgttcttttggataggttcctctggtcttcatggatttcagcattttatagcatcatatgctgttcttcttctgaaggaacaatttagtgaaactgtagatatttcctatgctgatgcttggtatgttgccaatttgcttcatgtgtaa
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| Protein seq | MTSIDLVFAEDAIGATYIYNPVQPMVTPAKCLTNCSNPNNILDLTVAAVVTCTSTSLASMDLEVGKDVACTTEIDGPDCHKETHTKCSMLGLDVKGGADHVGGAFLTMSGVSKSVPISIESIDIFSARLVSDLKQDIPTPTGCLLRIPRYDSKTQFSKKLRLEGIELKPWPPPTYSGVISGLEFRPMPWPAFIYCWLEEHLLDPWPPPTEWAELELWPPPHENDILPLLINGFTHILVDRKAISKFWKAIWSELGEEWSLFVPKLYELHLSGLLQHSVSMISQQLMSRRIWSTKAKMKMLNGWDSKQYLSIMRPIPGLFVKLIQDISPKSHHQAYIEAQVAKKFLENFGEDKVHFLAQSIAVPDTHLGQGCIGCCWLYGPNAISTFHLLIAILHIVRPLYMENIFTRTSHVAKKWATDLKGVVFDWNILGIVVQEVNYIELICDRDSYGCSVQKCYPQSILFMHNGWSFGGLLDWNSKQYKNSMLIVNPLELMQVLLVPLVWDPDAEMGQIGSYALQPENCQLTTCMRAHCIKPSDYEIITAKENHAADAPRLLIDVMEDEGNTVWTLEFSVSGVVQKKRDLWLCAFAVNKDMKVVMFLQQYGYANLVIVNLLSVPWDPGGSHLALAIKQGTRLSLWAITSIGWLCFLWCSFGAWWAVANVGMFFWIGSSGLHGFQHFIASYAVLLLKEQFSETVDISYADAWYVANLLHV |
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| Function | Probable aldehyde dehydrogenase [UniProtKB/Swiss-Prot:Q40255] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0018660 | OsNaBo_12g0018660.01 | Chr12 | 23098295 | 23104009 | - | NAM | ||
| CDS seq | atggccttgccctgctcctatggctcccactgcgccgccctgcccttccccgccgtggtctccagggcggcctcctcgccgccaccgcgctcccgggggagaaggcccagcctaccacccgccggatgcttccacgccgcgccaagggacgccgctctggtgtccggctccgctgctggtggcgtgagcaggaggaggtgtgagttatttgacctccatcagcacatcgttccatttgcggaatcttgggcttggcagcagtccattgtgacaaggaggaaagggttggtaggcacggatgaagatcactccgacaccttaatcgcgctgcagcatccaccagtttatacgctaggcactgacagcaccgaggactacctccatttcgatgttaaagatgctccttttgaggttcaccgtattgaccgtggtggggaggtgacatatcatggtcctggacagcttgtaatgtacccgattatcaacttgcgatatcatcaaatggaccttcattggtactttagatcacttgaagaggtgatcattcgtgcccttcagtccgcattttccatcaaggcatctagggtagaaggtctaaccggtgtctgggttggagataagaaagttgcagcaataggaattcatgtctcacgatggatagcatatcatggtctagcactcaacgtaaccactgagttaacaccatttcaactcattgttccctgcggcataaaagatcgtggcgttgggagcatcaaagagatattgcaaatagcatctgatggaaaagagatagacgaaacagcattgatcgataaagcctacagaaccctgcttaaagagtttgctgaagttttccagctctctttatatcacaaccctaactgggatcttcaggaaagcaaaaattttatttaa
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| Protein seq | MALPCSYGSHCAALPFPAVVSRAASSPPPRSRGRRPSLPPAGCFHAAPRDAALVSGSAAGGVSRRRCELFDLHQHIVPFAESWAWQQSIVTRRKGLVGTDEDHSDTLIALQHPPVYTLGTDSTEDYLHFDVKDAPFEVHRIDRGGEVTYHGPGQLVMYPIINLRYHQMDLHWYFRSLEEVIIRALQSAFSIKASRVEGLTGVWVGDKKVAAIGIHVSRWIAYHGLALNVTTELTPFQLIVPCGIKDRGVGSIKEILQIASDGKEIDETALIDKAYRTLLKEFAEVFQLSLYHNPNWDLQESKNFI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0018660 | OsNaBo_12g0018660.02 | Chr12 | 23098236 | 23101121 | - | NAM | ||
| CDS seq | atgacctctattgatctggtatttgctgaggacgcaatcggtgcaacctacatctacaatcctgtacagcccatggtaacgcccgccaagtgtttgacaaattgctccaaccccaataacatcctagacctcaccgtggcagcagtggttacgtgcacctccacttctctggcctccatggacctggaagttggtaaggacgtcgcctgcaccactgaaattgatggccctgactgtcacaaggagacgcacaccaaatgttcgatgttaggccttgatgtcaagggtggcgcagaccacgtcgggggcgcgttcctgacaatgtcgggtgtgtccaagtctgttccaatatctatcgagtcaattgacatcttctcggcaaggttggtcagcgacctcaagcaggacataccaacgcccaccgggtgtttgttgagaatccctcgatatgacagcaagacacagttcagtaaaaagctaaggctggaggggattgaattgaagccatggccacctccaacctacagtggagtgattagcggactggagttccgaccaatgccctggccagcattcatctattgttggcttgaagaacatctacttgatccttggccaccaccaactgaatgggctgagttggaactgtggcccccaccacatgagaatgacatcctgcccttattgatcaatggcttcacccatatcctggtggatcgaaaagcaatttcaaaattctggaaagcgatttggagtgagttaggtgaagaatggtcattgtttgttcctaagctatatgagctgcacttgagtggtctccttcagcattcagtaagcatgatatcacaacagcttatgtcaaggaggatatggtccactaaggctaaaatgaagatgttgaatggttgggattctaaacagtacctgagcattatgcggcctattccaggattgtttgttaaacttatccaagatatatctccaaagagccatcatcaagcttatatagaagctcaagttgctaaaaaattcttggaaaactttggtgaagataaggtacactttttggctcaatcaattgctgtacctgacactcaccttggacaaggctgtattggctgttgttggttgtatggcccaaatgcaattagcacattccatttactaatagccatactgcatattgtgagaccactttacatggaaaatattttcactaggacttcacatgtagcaaagaaatgggctacagacttgaaaggtgttgtgtttgattggaatatactgggtatagtggttcaagaggtcaattacattgaattgatctgtgaccgggattcgtatggttgtagtgttcagaagtgctatcctcagtctattctattcatgcacaatggttggtcttttggtggattgcttgattggaactctaaacaatacaagaacagtatgctaattgtgaacccattggaactcatgcaagtactgttagtgccattagtgtgggatccagatgctgagatgggtcagattggtagctacgctctacaaccagaaaattgtcaattaactacctgcatgagagcacattgcattaagccaagtgattatgagatcatcactgccaaagaaaaccatgctgctgatgctcctagactgcttattgatgtaatggaggatgaaggcaatacagtttggactttagaattttcagtcagtggagtggtacagaagaagcgtgatctttggttgtgtgcatttgctgttaacaaggacatgaaggttgttatgttcctgcagcaatatggttatgcaaacttagtaattgtcaatttattgagtgttccatgggatccaggcggctctcatttggcattagctattaaacaaggaactaggctttcactgtgggctattacaagcattggctggttgtgtttcctatggtgctcctttggtgcgtggtgggcagtggcaaatgttgggatgttcttttggataggttcctctggtcttcatggatttcagcattttatagcatcatatgctgttcttcttctgaaggaacaatttagtgaaactgtagatatttcctatgctgatgcttggtatgttgccaatttgcttcatgtgtaa
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| Protein seq | MTSIDLVFAEDAIGATYIYNPVQPMVTPAKCLTNCSNPNNILDLTVAAVVTCTSTSLASMDLEVGKDVACTTEIDGPDCHKETHTKCSMLGLDVKGGADHVGGAFLTMSGVSKSVPISIESIDIFSARLVSDLKQDIPTPTGCLLRIPRYDSKTQFSKKLRLEGIELKPWPPPTYSGVISGLEFRPMPWPAFIYCWLEEHLLDPWPPPTEWAELELWPPPHENDILPLLINGFTHILVDRKAISKFWKAIWSELGEEWSLFVPKLYELHLSGLLQHSVSMISQQLMSRRIWSTKAKMKMLNGWDSKQYLSIMRPIPGLFVKLIQDISPKSHHQAYIEAQVAKKFLENFGEDKVHFLAQSIAVPDTHLGQGCIGCCWLYGPNAISTFHLLIAILHIVRPLYMENIFTRTSHVAKKWATDLKGVVFDWNILGIVVQEVNYIELICDRDSYGCSVQKCYPQSILFMHNGWSFGGLLDWNSKQYKNSMLIVNPLELMQVLLVPLVWDPDAEMGQIGSYALQPENCQLTTCMRAHCIKPSDYEIITAKENHAADAPRLLIDVMEDEGNTVWTLEFSVSGVVQKKRDLWLCAFAVNKDMKVVMFLQQYGYANLVIVNLLSVPWDPGGSHLALAIKQGTRLSLWAITSIGWLCFLWCSFGAWWAVANVGMFFWIGSSGLHGFQHFIASYAVLLLKEQFSETVDISYADAWYVANLLHV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.016077 | 7.579648 | 6.121644 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g40440 | RBH | 0.290041 | 0.646969 | 0.454229 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019490 | RBH | 0.484649 | 0.0 | 0.754110 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019600 | RBH | 0.041735 | 0.000000 | 0.297891 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019930 | RBH | 1.495912 | 2.017308 | 6.007031 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019250 | RBH | 0.0 | 0.057063 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018860 | RBH | 4.131951 | 7.532061 | 6.898933 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0333700 | RBH | 2.554034 | 6.5083365 | 4.4447485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018730 | RBH | 0.245922 | 0.458318 | 0.901623 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0363800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018970 | RBH | 0.077352 | 0.082969 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019200 | RBH | 0.352914 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019120 | RBH | 2.278904 | 11.002890 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019150 | RBH | 0.253935 | 0.0 | 0.365483 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019330 | RBH | 0.0 | 2.302420 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018970 | RBH | 0.239696 | 1.359034 | 1.077144 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
