Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0021940 | OGI:08049040 | 3/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:26678653-26683032 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatcctcttagaacagataaaatcacaatcatgtgccttgttggtatattacattccttcaaggtccttatgagcattttttcttctgtagtcatgtgtttgtgtgatttgagaaatctcacttcatctcttggacttagttgatgattgtggtctaattgtacccttgaaatattccaaatctcattcctctctgaaataaccagagcacacttgcaatctgttgcatcattttcatttgtatttctttccattccttttcttgcttgttgtgtggtagttgtgagccctgacaatagaaaatctagccaacagagcatagaagttaaagaattcatgtgcttctgtaatagtcttaaattgtgttccaactcttggtatatatctgctatcaattgctgcattattgccctttgtagcttcttcctgttcattctctacgaaaatatttatgtcttcttctgtcagctcttgttgatttgtttcagagttatcatttggattattgtcatcatctcttgttccttgaactgaagtacatcgatgattatccattgagcttggttcctgcaaaaaaaaagcagttccattagtttctgaaattaattttctagcctattcattactaatctgaattattcaatttaattttttaagaaatattaatgtttgtactctttcttttgcagactatgaaacttcaatcatcaatcattgttatctagagaaaaaggtacaaacaacaaaaattaccttttcaccatctaacaaattgaatatatcaagattccaattatccattgcatcctcttcattactctcatcttcttggaatttgaattacattacagttaaaatttactaaaattatcataatttttaatactacaacaggaagtaatacatccaagacaacatgcctcatttgccgcatcattattccattcttcaatattagcatcagtacgatttgttgttaatatcattgaattctgcaaaacaaaatttttatatcaatacttatttgcttttgaatttgaattattagattcaattaaataattaatatttcatacctgaaatgcacttggactcgcaacaaaagtagagtgtgctgaattttgttcctgtaaattccaataaaaacagaaatattacaactaaattatatatgatattcaaatattgtttttcttacctgcatatcagaaatcgtaggctgtgatgatatgatttgttccattaagcttgtgtatgacatatttgcaacctgcaaataaattttcatatagtattttgactaccaccttcaaatttttcctttaatagcaaaaactttgtaatatgaacttactgaattcattgatccgaaaagagataattcatcatatgaatacttgttgctgtaatcaacaaatgcttctgtcatacttgctgaattatccatactttgcttttctactgttgcatcttctgctcctaatccaatatgatctgttatatttgcaattaaagtaattgtgatcaaattatatataggttccagtcaaactgtataacaatcaagttgaagtttaaaattattcttattctgtttcaaattgactgtaatttttgcattttgtgtttttttactgaaggaattatgcatttgttcaattccattttgaattgttacctgtgtttggttcatccagagcattgcttcttcctacctcattacctgttatgcctgcaatagattgattgattcaacattaaaaattagagtaaatttgtattccagtttgaaatttttagtattggaattacagttttttatgtaatttttatacaaattaactgtaatgaaagaattgttctgaaacagaataagaatacctgtgtaagatcttacctgagtttacaaaagttgtttcatactctgtcaaaatactttgtttcatattctgaatttgttttgagtgaatacttctttctccttctgacaattcaattgtgatacctgcaaaataaaaatcattatgaaggaagtcaagatagatactgtattttcagttattgttacatgtatttttattacttcttctctgtaactagttttaatgttaatattttagattttaaaaagtacccagttgaaagtatatagttcagatcatctagatgtttgtcatttttttaaaaaatacattgaactacataattttttgtttcttacctgagctcaacatagctgtgttaatttctgtcagatttgattgacttataatctctgtatccatttctgtcagagctttgaagtgcttttttatatctgatggcatttttttaaaaaatttcagactcattttaatcttcttatttgtgaataaaatttgaaattatcttgttcacctgattctttttcttctatttccatagaactcttgctttgtttctccttttgtatgccacctgcatagaaagaataaattaatattgcaaagaacttttgaatttctaaaccagcaagttctgaaacatagagtgtatttcccaatctttttcataagtccatttatagtgaacatatatttgtattacagagaaattatactataattccagtaaacataaattgtaactacttaaaaatccaactacaatcaatttgatacttgattatagacactgaagtgaacaaatgaatcaatttgtataattctttcaaaataattttaatattacactaagtatgtatttcaattacagtgtaatgctactataattccagttaaaatttactgtaactcttgtttacctatattttttccttctatttccttagaacttttgcattctttgtccttttgtatgacacctgtaaagaaatattcaagatagtctttaaatgtttttcaaacctgtatgagtatgttccataagtagtattacagtaaataagtatttcaattagagtgtaatgctactgtaattccagttaaaatttacttatggaacaaactatctgatggcactttttcttataatatctgatggcaccttttcttttctatttctttctatttcaattagatatgatttgttttggtttttacatatgtactacttttgaagtatttgataccctgttttttgctcgaaaaatctgaaatcatcttgaaattgagattaaactgcattagatcatgatttcatatgaattttacattgtttctttgtagttacatgtattttcaattgaaattgtagtgttcactctatatatttgtaatacaagttcactgtaactagtttcattatattctattttgagacattgaacaaatcaacaatgatctattatctgaaatcttcattttgttgtctgatgatgagagaaacattgaactgagatagtcttgagtttaaaacatatcttgaatgtgttcctgaatttgtgcatgattgtgtgagctaaactattttgtttactgaactaatctttttacaatgagttaatactagaattactgtgattcttatatgtaattttattacttttttactgtaacatgttaagaaatttgtgagttcatatgaattggctcttttgtttgtgttgtatgagatattgaacttttatgtaatattgagttggatgagacaagtggttgacattgagatttgaatttgtcattagtttaatatggtgattatgctgataaaattgaatgtatgacaattcaggatatgctatatagcctagttgttatatttctgtataactgtataactgtgatatcttcggagtgaaattcagtaaggttggaagactaatcaatctgtcatgttttttttataaatttagtttggtattcatcaatagtacatagtaatacaatcatccagaatgcagttttgtagtactgaatgcagtgtagttttacttttatcattacatagttcagatctacatagcaaacatatgaaattttcagttctgagttgttgtatttatccagcaaagtggattgttaaccttgtttcatttgacatattcaacaatttcatgtattcttttgaattgtatatttgacctaaactctctctttgatctttttcaggaattgtatataggggataagaattggagccttgaactaaccttgaactggagccttcttgtttctcttgattttgccttcctcttgttttttctttgtgttctccagattctgtgtttcctttgtatggatctcaactttctgttcagaagttgtctttgatttcttctttcctctagaactactctttgattctgacattgtactctctccttccatctgcgatttggatcctctttttctctcttctttctcttctcctagctccat
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| CDS seq | atggagctaggagaagagaaagaagagagaaaaagaggatccaaatcgcagatggaaggagagagtacaatgtcagaatcaaagagtagttctagaggaaagaagaaatcaaagacaacttctgaacagaaagttgagatccatacaaaggaaacacagaatctggagaacacaaagaaaaaacaagaggaaggcaaaatcaagagaaacaagaaggctccagttcaaggtgtcatacaaaaggacaaagaatgcaaaagttctaaggaaatagaaggaaaaaatataggtggcatacaaaaggagaaacaaagcaagagttctatggaaatagaagaaaaagaatcagatataaaaaagcacttcaaagctctgacagaaatggatacagagattataagtcaatcaaatctgacagaaattaacacagctatgttgagctcaggtatcacaattgaattgtcagaaggagaaagaagtattcactcaaaacaaattcagaatatgaaacaaagtattttgacagagtatgaaacaacttttgtaaactcaggcataacaggtaatgaggtaggaagaagcaatgctctggatgaaccaaacacagatcatattggattaggagcagaagatgcaacagtagaaaagcaaagtatggataattcagcaagtatgacagaagcatttgttgattacagcaacaagtattcatatgatgaattatctcttttcggatcaatgaattcagttgcaaatatgtcatacacaagcttaatggaacaaatcatatcatcacagcctacgatttctgatatgcaggaacaaaattcagcacactctacttttgttgcgagtccaagtgcatttcagaattcaatgatattaacaacaaatcgtactgatgctaatattgaagaatggaataatgatgcggcaaatgaggcatgttgtcttggatgtattacttcctgttgtaaagatgagagtaatgaagaggatgcaatggataattggaatcttgatatattcaatttgttagatggtgaaaaggaaccaagctcaatggataatcatcgatgtacttcagttcaaggaacaagagatgatgacaataatccaaatgataactctgaaacaaatcaacaagagctgacagaagaagacataaatattttcgtagagaatgaacaggaagaagctacaaagggcaataatgcagcaattgatagcagatatataccaagagttggaacacaatttaagactattacagaagcacatgaattctttaacttctatgctctgttggctagattttctattgtcagggctcacaactaccacacaacaagcaagaaaaggaatggaaagaaatacaaatga
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| Protein seq | MELGEEKEERKRGSKSQMEGESTMSESKSSSRGKKKSKTTSEQKVEIHTKETQNLENTKKKQEEGKIKRNKKAPVQGVIQKDKECKSSKEIEGKNIGGIQKEKQSKSSMEIEEKESDIKKHFKALTEMDTEIISQSNLTEINTAMLSSGITIELSEGERSIHSKQIQNMKQSILTEYETTFVNSGITGNEVGRSNALDEPNTDHIGLGAEDATVEKQSMDNSASMTEAFVDYSNKYSYDELSLFGSMNSVANMSYTSLMEQIISSQPTISDMQEQNSAHSTFVASPSAFQNSMILTTNRTDANIEEWNNDAANEACCLGCITSCCKDESNEEDAMDNWNLDIFNLLDGEKEPSSMDNHRCTSVQGTRDDDNNPNDNSETNQQELTEEDINIFVENEQEEATKGNNAAIDSRYIPRVGTQFKTITEAHEFFNFYALLARFSIVRAHNYHTTSKKRNGKKYK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0021940 | OsKeNa_08g0021940.01 | Chr08 | 26678888 | 26683032 | - | NAM | ||
| CDS seq | atggagctaggagaagagaaagaagagagaaaaagaggatccaaatcgcagatggaaggagagagtacaatgtcagaatcaaagagtagttctagaggaaagaagaaatcaaagacaacttctgaacagaaagttgagatccatacaaaggaaacacagaatctggagaacacaaagaaaaaacaagaggaaggcaaaatcaagagaaacaagaaggctccagttcaaggtgtcatacaaaaggacaaagaatgcaaaagttctaaggaaatagaaggaaaaaatataggtggcatacaaaaggagaaacaaagcaagagttctatggaaatagaagaaaaagaatcagatataaaaaagcacttcaaagctctgacagaaatggatacagagattataagtcaatcaaatctgacagaaattaacacagctatgttgagctcaggtatcacaattgaattgtcagaaggagaaagaagtattcactcaaaacaaattcagaatatgaaacaaagtattttgacagagtatgaaacaacttttgtaaactcaggcataacaggtaatgaggtaggaagaagcaatgctctggatgaaccaaacacagatcatattggattaggagcagaagatgcaacagtagaaaagcaaagtatggataattcagcaagtatgacagaagcatttgttgattacagcaacaagtattcatatgatgaattatctcttttcggatcaatgaattcagttgcaaatatgtcatacacaagcttaatggaacaaatcatatcatcacagcctacgatttctgatatgcaggaacaaaattcagcacactctacttttgttgcgagtccaagtgcatttcagaattcaatgatattaacaacaaatcgtactgatgctaatattgaagaatggaataatgatgcggcaaatgaggcatgttgtcttggatgtattacttcctgttgtaaagatgagagtaatgaagaggatgcaatggataattggaatcttgatatattcaatttgttagatggtgaaaaggaaccaagctcaatggataatcatcgatgtacttcagttcaaggaacaagagatgatgacaataatccaaatgataactctgaaacaaatcaacaagagctgacagaagaagacataaatattttcgtagagaatgaacaggaagaagctacaaagggcaataatgcagcaattgatagcagatatataccaagagttggaacacaatttaagactattacagaagcacatgaattctttaacttctatgctctgttggctagattttctattgtcagggctcacaactaccacacaacaagcaagaaaaggaatggaaagaaatacaaatga
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| Protein seq | MELGEEKEERKRGSKSQMEGESTMSESKSSSRGKKKSKTTSEQKVEIHTKETQNLENTKKKQEEGKIKRNKKAPVQGVIQKDKECKSSKEIEGKNIGGIQKEKQSKSSMEIEEKESDIKKHFKALTEMDTEIISQSNLTEINTAMLSSGITIELSEGERSIHSKQIQNMKQSILTEYETTFVNSGITGNEVGRSNALDEPNTDHIGLGAEDATVEKQSMDNSASMTEAFVDYSNKYSYDELSLFGSMNSVANMSYTSLMEQIISSQPTISDMQEQNSAHSTFVASPSAFQNSMILTTNRTDANIEEWNNDAANEACCLGCITSCCKDESNEEDAMDNWNLDIFNLLDGEKEPSSMDNHRCTSVQGTRDDDNNPNDNSETNQQELTEEDINIFVENEQEEATKGNNAAIDSRYIPRVGTQFKTITEAHEFFNFYALLARFSIVRAHNYHTTSKKRNGKKYK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0021940 | OsKeNa_08g0021940.02 | Chr08 | 26678653 | 26678885 | - | NAM | ||
| CDS seq | atgatgcaacagattgcaaagaggaatgagatttggaatatttcaagggtacaattagaccacaatcatcaactaagtccaagagatgaagtgagatttctcaaatcacacaaacacatgactacagaagaaaaaatgctcataaggaccttgaaggaatgtaatataccaacaaggcacatgattgtgattttatctgttctaagaggatga
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| Protein seq | MMQQIAKRNEIWNISRVQLDHNHQLSPRDEVRFLKSHKHMTTEEKMLIRTLKECNIPTRHMIVILSVLRG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40310 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022050 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021330 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021830 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017000 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018670 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0201300 | SBH | 0.0069915 | 0.1400355 | 0.0128135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017450 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0427600 | SBH | 0 | 0.0054345 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012280 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017800 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016170 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018300 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018460 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G016530 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0010340 | SBH | 0.0 | 0.0 | 0.0 |
