Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_08g0004990 OGI:08010850 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr08:4368176-4373636
Gene Symbol -
DNA seq

ccccaatccgtcccgtctcctcgcccgccgccctcgcctgccatcctgccagcagaggtggcgccgccgttctcctgctcccgctgcattcgctcaccggtgagcatcctaatccatcccatccggcctcggcctcgtcctcgaatttcgcctcctcgcccggcgtcctcctgcatccaccgcatcatcgctcgccggtgagcatccctcccttcccacacctcatcaggtgttctgcccagttccacctactttcaacttgttaattttgatttttgtttttagcggatgtaatttggttactgaatctcatccaaacacccttagaatagttgcattagaacgaaaaatgtaagctcacatcatttgtactcatccaaactcacataatttgtaatatttattaagtatcaataagtaaaacggataatttaccatgtgacaaattaattattaaaataaattgtattcatccgttgtaatgcgcggatatttttaaatgatttactagctgctgccattaggtaatctttcacatttttttacttactatgaaatccaaatctctgattcttttctttttacaattaatgtttggttcaaaacttgcccactaggtaatctttcacaTttttttacttctgaatctctgaatttttttttaccattaatgtttggttcaaaacttgtgggctaaactgaagagaggtgtgctgagtggagggaggtagcgaactagattaagactaaaaaggaatgaaagaatggactttaggcccaaaactaaggaaaagaactaaggaaaattttcattaacttttttaattaaactgtatagcgatcctaatgtttcaattcattacttgattcctaattacggtggtatcactatgaaacatttttatctgttgcaatgcacggatattttttttgggaaatttaactatttgccacttttgggatatggcaattaatgatttgccactcgctgtctatgacatgtgggctctcatttgtctatgacatgtgggcctagtggcaaattgttaagcaccactcgtaagagtggcaaatagttaaaagtcccatttttttttccttagttgtaactaaatccttcacctaaagggaacgggaggagaaggcgaggttagagaatcctagacgttcgttggttcttggacggtctagtttcaccccaactgcttaacctgcagtcgatgcaacgactgcacctgatccaggcgttacacattctatccggtattgcgtcgacgaccgccacacttgagccagtggtagttatggccgagaagagcgtggccccttcctccttcctcctttgcctctcgtcgacgcttcccggactccttccaccgaagcgcgcgccacgctcgctacatggccggcgtagcgcggagtcccattaggacttgagagtgatttcttctttctgaaatgatttggattggtttcgtttcttcggcgtagcccggagtcccattaggacttgagtgatttcttctttctgaaatgacttggattggtttcgtttcttccgttggtgatgaactgtggctcctttgattggtttcgtagctttttctagcattttatctgttgcgggcaaaaccccttacctctcccgtataacccattagtttttgagttttttttttgcgtgataatagagagcactgatagatattactcgaaacgaaacgtactggtgtgtactagcactttattatttccaaagagtttgatggtttctttgcctacttgcctggatcacgttaggtgcgatttacctttaataattcaaaatagattgatcagtatctacgaacaaaaaaagaagatagtaaaatgtttattgcacatttacgatatggtaggattccaagcactgcttgttagtttgttagttaatagtagtttgtaatcatttagatgccacaattcaaagcctttctcagttacccagtgcattttgtactagttttaagcaaaatgttcttgatctctgcgcagttgggatcccactgacttgctgattgcaactgtcagtgtggtgattggactgcatcagttgtgggaattgaactggtcaagtctcagactaatacaatgcaaggcatttttgcatgtggttcaatttcctcggcccatggatcatgctttagaccagcttgtcttgcagtggatgatctgaggttgttttacaaaataaattcagtaacctgtggagcgtactcgtggcgttggtgtgtgaaaaaactacatatgaggaccaatagaaggcaaatgggtactacggtgagaactaatgctagatggctatttggaggagatggccgtagcagtagtaatgcaaggatggaacgcagtgagtctgctaacgaagacatcttaatcttctacttccaattggacctacaaacccggatacaggtgagttgttgcttccttaccatcattttctaaagcgaataaagttaccaatccagtcggcagctattcttttttcacggatcaattccctagactagtagcaatcggctaactaaatctactatcatgatcattgcatcattcttagttgctagtcactggttcatgcaactgtttgatacttacctatgcacgtccagcctaactattgaatttcttggttcttactagtatgcattgaatatagagcaatttgatgtggcaaaacaattgagggaaaaactcacagaggtaccaaatgacttcacttgaagataaatgaattcattgtatgagacttgctaaagaaaatatcctcctctagattgaaacagtgataattaggcaacgtgaagctaaaagaggctcatcaaagactgaagctcaggacaaagctataaaccttttacgcgtgcggtatgttaatagtttccatttctccatgacgttctagtgttatgtagcattggttcatttgagagatcacttagctttatccatttgtttcagtgcggatttgcaaaaggccgttgacagtgaaaactatgctttggcagctgcactgcgtgatgaaattgctaaacttgaggtacagcaaaactgtagtgcaccggccatgtgatggtaatgtgtaaataacatattaacttcaaacatcatgtagacagagtctctggcagtctccgctaaggcccttgcatatcaaaatgtgaaatatgcatttcgactagggcagaaagtacgccataaggtacatggtgagtactactgctatactacccacttcgtattattgtttacacattatttctgaagctatccagaaaatggataactactacaaatttcttttcaaactttatataagaagttaatttttcataattgtcattatccttaaatgtaacatttgcatgtgttaaagcacactttgtatcaaatattaaacttcagtgaacatgctttagtttatcttcttaattttacatcacctgctgaaggatatagagctgtgatttgtggcatggatcatgtgtgctgtgaatccaagtcatggatggagacagcaaatgtggaaaacttgtccaaaggaccgaatcaacctttttatcaagtaaatgctgcttgacttattccaatttaagtagttcctcaatgcccatagttcatagaaatatcatttccttcatgtagcatcagttgtgacttgtttatcatggatggcgattatgtgtaataatacctacctgttcttgttcttaatttgcaaactcacttgtggaattgagatggtgatattcatcattgcctttttctcctcccttttggatttgttcggtataatcaggacgttcatgatgcaattttattagcctgcaattgactgtttctctatgcaactaatgcttacttttggatgatattgcccatgcatactgatgtgtttgcatagtttagtcttttgagaattgagatgcttagtgatcctctgtgattcattgccgaaatcttgcaggtccttgttgatgtatatgctgatccagaactccttgttgcatacggtattgatttttcttttccactgtttacacttagtttatgaggcagttgactttgagctatattttcacagaaaacatttatttccttttatggcgatttaaattccatatgctaactcagatttattacgactttatctttagttatgctgttattaaagaagcctcatcaggctattgttcagaaaaatcaccagagacagctcactatatttttactcgacctgaaaaatataaactagcaggttctctactcagtttctaaattacctttgctcagtgaaaatgaacaactatgtgctgattctcatgtcaaaataattccactattttgatagacatgaccactggtggaaattctatcttgagatcggtaacttttaatgagcaatcttgttttgtgtaaaatggcagaagaaggcaagatagtaggctaattcagtagtcaaatgatcaaatccatcttcacttactgttttatgtctatgatgtgccattttgagacatgttatgtctgtataatttcagttgcagaagaaaatcttgcagaggctgaaataccagagaaagtgagtttgagttcttcatttgcttggtggttttcatttttggtcaaattgaactaatgctgtccgcctgtccccgtttatttacagggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagctgaaaggtgagtttttcacttataatgaggcgttcgtgtaattggcaagtggaccacaaaattaatattatctgtccctgcgtgatacattcaggtaggcagcaagagttgttttgatgccatttccgatgccttaccaccgactgagttccgaaatggtgaaggagcttgacagcttgttactatctgatgtaactacagcgggctaatgtcagtgaagactggtgactgggctaacctggaacctgaacaatccacagcaatctgcaatgaggcaatctgcatttgatatattgatatctgaccttgcagattcacgattgagggtaacacccgtatagtggccaatccatgaagccctttacatatacggttctaaagaagatccttgtggatttgcagtctgtacttccccaagttcttctgtaactgtgttccctctgatgggaattttgtagataagctgcattcatcaaacctgcaactctgcagctgcagagaaagcaaagggttgacgtacatctattggaaagttggaatatacttacgtggaaaactgcaaaccacagaatttttgacgctcggggaaaataacca

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CDS seq

atgcaaggcatttttgcatgtggttcaatttcctcggcccatggatcatgctttagaccagcttgtcttgcagtggatgatctgaggttgttttacaaaataaattcagtaacctgtggagcgtactcgtggcgttggtgtgtgaaaaaactacatatgaggaccaatagaaggcaaatgggtactacggtgagaactaatgctagatggctatttggaggagatggccgtagcagtagtaatgcaaggatggaacgcagtgagtctgctaacgaagacatcttaatcttctacttccaattggacctacaaacccggatacagtatgcattgaatatagagcaatttgatgtggcaaaacaattgagggaaaaactcacagagattgaaacagtgataattaggcaacgtgaagctaaaagaggctcatcaaagactgaagctcaggacaaagctataaaccttttacgcgtgcgtgcggatttgcaaaaggccgttgacagtgaaaactatgctttggcagctgcactgcgtgatgaaattgctaaacttgagacagagtctctggcagtctccgctaaggcccttgcatatcaaaatgtgaaatatgcatttcgactagggcagaaagtacgccataaggtacatggtgagtactactgctatactacccacttcgtattatttgaacatgctttagtttatcttcttaattttacatcacctgctgaaggatatagagctgtgatttgtggcatggatcatgtgtgctgtgaatccaagtcatggatggagacagcaaatgtggaaaacttgtccaaaggaccgaatcaacctttttatcaagtccttgttgatgtatatgctgatccagaactccttgttgcatacgttgcagaagaaaatcttgcagaggctgaaataccagagaaaggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagctga

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Protein seq

MQGIFACGSISSAHGSCFRPACLAVDDLRLFYKINSVTCGAYSWRWCVKKLHMRTNRRQMGTTVRTNARWLFGGDGRSSSNARMERSESANEDILIFYFQLDLQTRIQYALNIEQFDVAKQLREKLTEIETVIIRQREAKRGSSKTEAQDKAINLLRVRADLQKAVDSENYALAAALRDEIAKLETESLAVSAKALAYQNVKYAFRLGQKVRHKVHGEYYCYTTHFVLFEHALVYLLNFTSPAEGYRAVICGMDHVCCESKSWMETANVENLSKGPNQPFYQVLVDVYADPELLVAYVAEENLAEAEIPEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTDS

Function Clp protease adapter protein ClpF, chloroplastic [UniProtKB/Swiss-Prot:Q67Y99]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_08g0004990 OsKeNa_08g0004990.01 Chr08 4368176 4373636 + NAM
CDS seq

atgcaaggcatttttgcatgtggttcaatttcctcggcccatggatcatgctttagaccagcttgtcttgcagtggatgatctgaggttgttttacaaaataaattcagtaacctgtggagcgtactcgtggcgttggtgtgtgaaaaaactacatatgaggaccaatagaaggcaaatgggtactacggtgagaactaatgctagatggctatttggaggagatggccgtagcagtagtaatgcaaggatggaacgcagtgagtctgctaacgaagacatcttaatcttctacttccaattggacctacaaacccggatacagtatgcattgaatatagagcaatttgatgtggcaaaacaattgagggaaaaactcacagagattgaaacagtgataattaggcaacgtgaagctaaaagaggctcatcaaagactgaagctcaggacaaagctataaaccttttacgcgtgcgtgcggatttgcaaaaggccgttgacagtgaaaactatgctttggcagctgcactgcgtgatgaaattgctaaacttgagacagagtctctggcagtctccgctaaggcccttgcatatcaaaatgtgaaatatgcatttcgactagggcagaaagtacgccataagcacactttgtatcaaatattaaacttcagtgaacatgctttagtttatcttcttaattttacatcacctgctgaaggatatagagctgtgatttgtggcatggatcatgtgtgctgtgaatccaagtcatggatggagacagcaaatgtggaaaacttgtccaaaggaccgaatcaacctttttatcaagtccttgttgatgtatatgctgatccagaactccttgttgcatacgttgcagaagaaaatcttgcagaggctgaaataccagagaaaggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagctga

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Protein seq

MQGIFACGSISSAHGSCFRPACLAVDDLRLFYKINSVTCGAYSWRWCVKKLHMRTNRRQMGTTVRTNARWLFGGDGRSSSNARMERSESANEDILIFYFQLDLQTRIQYALNIEQFDVAKQLREKLTEIETVIIRQREAKRGSSKTEAQDKAINLLRVRADLQKAVDSENYALAAALRDEIAKLETESLAVSAKALAYQNVKYAFRLGQKVRHKHTLYQILNFSEHALVYLLNFTSPAEGYRAVICGMDHVCCESKSWMETANVENLSKGPNQPFYQVLVDVYADPELLVAYVAEENLAEAEIPEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTDS

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_08g0004990 OsKeNa_08g0004990.04 Chr08 4368176 4373635 + NAM
CDS seq

atgcaaggcatttttgcatgtggttcaatttcctcggcccatggatcatgctttagaccagcttgtcttgcagtggatgatctgaggttgttttacaaaataaattcagtaacctgtggagcgtactcgtggcgttggtgtgtgaaaaaactacatatgaggaccaatagaaggcaaatgggtactacggtgagaactaatgctagatggctatttggaggagatggccgtagcagtagtaatgcaaggatggaacgcagtgagtctgctaacgaagacatcttaatcttctacttccaattggacctacaaacccggatacagattgaaacagtgataattaggcaacgtgaagctaaaagaggctcatcaaagactgaagctcaggacaaagctataaaccttttacgcgtgcgtgcggatttgcaaaaggccgttgacagtgaaaactatgctttggcagctgcactgcgtgatgaaattgctaaacttgagacagagtctctggcagtctccgctaaggcccttgcatatcaaaatgtgaaatatgcatttcgactagggcagaaagtacgccataaggtacatggtgagtactactgctatactacccacttcgtattatttgaacatgctttagtttatcttcttaattttacatcacctgctgaaggatatagagctgtgatttgtggcatggatcatgtgtgctgtgaatccaagtcatggatggagacagcaaatgtggaaaacttgtccaaaggaccgaatcaacctttttatcaagtccttgttgatgtatatgctgatccagaactccttgttgcatacgttgcagaagaaaatcttgcagaggctgaaataccagagaaaggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagctga

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Protein seq

MQGIFACGSISSAHGSCFRPACLAVDDLRLFYKINSVTCGAYSWRWCVKKLHMRTNRRQMGTTVRTNARWLFGGDGRSSSNARMERSESANEDILIFYFQLDLQTRIQIETVIIRQREAKRGSSKTEAQDKAINLLRVRADLQKAVDSENYALAAALRDEIAKLETESLAVSAKALAYQNVKYAFRLGQKVRHKVHGEYYCYTTHFVLFEHALVYLLNFTSPAEGYRAVICGMDHVCCESKSWMETANVENLSKGPNQPFYQVLVDVYADPELLVAYVAEENLAEAEIPEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTDS

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_08g0004990 OsKeNa_08g0004990.03 Chr08 4368176 4373635 + NAM
CDS seq

atgcaaggcatttttgcatgtggttcaatttcctcggcccatggatcatgctttagaccagcttgtcttgcagtggatgatctgaggttgttttacaaaataaattcagtaacctgtggagcgtactcgtggcgttggtgtgtgaaaaaactacatatgaggaccaatagaaggcaaatgggtactacggtgagaactaatgctagatggctatttggaggagatggccgtagcagtagtaatgcaaggatggaacgcagtgagtctgctaacgaagacatcttaatcttctacttccaattggacctacaaacccggatacagtatgcattgaatatagagcaatttgatgtggcaaaacaattgagggaaaaactcacagagattgaaacagtgataattaggcaacgtgaagctaaaagaggctcatcaaagactgaagctcaggacaaagctataaaccttttacgcgtgcgtgcggatttgcaaaaggccgttgacagtgaaaactatgctttggcagctgcactgcgtgatgaaattgctaaacttgagacagagtctctggcagtctccgctaaggcccttgcatatcaaaatgtgaaatatgcatttcgactagggcagaaagtacgccataaggtacatggtgagtactactgctatactacccacttcgtattatttgaacatgctttagtttatcttcttaattttacatcacctgctgaaggatatagagctgtgatttgtggcatggatcatgtgtgctgtgaatccaagtcatggatggagacagcaaatgtggaaaacttgtccaaaggaccgaatcaacctttttatcaagtccttgttgatgtatatgctgatccagaactccttgttgcatacgttgcagaagaaaatcttgcagaggctgaaataccagagaaaggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagctga

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Protein seq

MQGIFACGSISSAHGSCFRPACLAVDDLRLFYKINSVTCGAYSWRWCVKKLHMRTNRRQMGTTVRTNARWLFGGDGRSSSNARMERSESANEDILIFYFQLDLQTRIQYALNIEQFDVAKQLREKLTEIETVIIRQREAKRGSSKTEAQDKAINLLRVRADLQKAVDSENYALAAALRDEIAKLETESLAVSAKALAYQNVKYAFRLGQKVRHKVHGEYYCYTTHFVLFEHALVYLLNFTSPAEGYRAVICGMDHVCCESKSWMETANVENLSKGPNQPFYQVLVDVYADPELLVAYVAEENLAEAEIPEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTDS

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_08g0004990 OsKeNa_08g0004990.02 Chr08 4368176 4373635 + NAM
CDS seq

atgcaaggcatttttgcatgtggttcaatttcctcggcccatggatcatgctttagaccagcttgtcttgcagtggatgatctgaggttgttttacaaaataaattcagtaacctgtggagcgtactcgtggcgttggtgtgtgaaaaaactacatatgaggaccaatagaaggcaaatgggtactacggtgagaactaatgctagatggctatttggaggagatggccgtagcagtagtaatgcaaggatggaacgcagtgagtctgctaacgaagacatcttaatcttctacttccaattggacctacaaacccggatacagtatgcattgaatatagagcaatttgatgtggcaaaacaattgagggaaaaactcacagagattgaaacagtgataattaggcaacgtgaagctaaaagaggctcatcaaagactgaagctcaggacaaagctataaaccttttacgcgtgcgtgcggatttgcaaaaggccgttgacagtgaaaactatgctttggcagctgcactgcgtgatgaaattgctaaacttgagacagagtctctggcagtctccgctaaggcccttgcatatcaaaatgtgaaatatgcatttcgactagggcagaaagtacgccataaggtacatggatatagagctgtgatttgtggcatggatcatgtgtgctgtgaatccaagtcatggatggagacagcaaatgtggaaaacttgtccaaaggaccgaatcaacctttttatcaagtccttgttgatgtatatgctgatccagaactccttgttgcatacgttgcagaagaaaatcttgcagaggctgaaataccagagaaaggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagctga

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Protein seq

MQGIFACGSISSAHGSCFRPACLAVDDLRLFYKINSVTCGAYSWRWCVKKLHMRTNRRQMGTTVRTNARWLFGGDGRSSSNARMERSESANEDILIFYFQLDLQTRIQYALNIEQFDVAKQLREKLTEIETVIIRQREAKRGSSKTEAQDKAINLLRVRADLQKAVDSENYALAAALRDEIAKLETESLAVSAKALAYQNVKYAFRLGQKVRHKVHGYRAVICGMDHVCCESKSWMETANVENLSKGPNQPFYQVLVDVYADPELLVAYVAEENLAEAEIPEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTDS

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
SE Chr08 4370629 4370994 + OsKeNa_08g0004990.02,OsKeNa_08g0004990.03,OsKeNa_08g0004990.01 OsKeNa_08g0004990.03,OsKeNa_08g0004990.01,OsKeNa_08g0004990.04,OsKeNa_08g0004990.02 All

Expression

Leaf Root Panicle
FPKM 1.801888 1.139806 5.688226

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0172200 RBH 12.677885 10.971899 2.018930
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g07540 RBH 9.423159 7.641999 0.517111
Nipponbare | IRGSP 1.0 | RAP-db Os08g0172200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0004900 RBH 3.065260 3.660589 8.601970
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0034280 RBH 0.943760 1.094892 1.321478
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0004930 RBH 7.100814 2.383177 8.784642
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0004990 RBH 1.454762 0.061729 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0004710 RBH 36.763935 3.763360 13.635584
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0063600 RBH 8.7339205 3.8209525 1.484404
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0004550 RBH 1.571184 0.254115 1.208136
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0069100 RBH 7.824004 4.10488 3.5104385
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0004660 RBH 1.479462 0.176526 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0004700 RBH 2.937015 1.967816 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0004530 RBH 26.018869 1.292811 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0004810 RBH 4.065148 0.343211 1.558399
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0004750 RBH 2.480685 2.816190 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G004660 RBH 2.501314 0.0 3.268069
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0004620 RBH 8.234084 10.105006 6.613875
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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