Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0172200 | OGI:08010850 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:4237020-4242584 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGTGGCCGTCCGCCGCTCCGCGCCTCCGCTCTGCTACCTGCGCCTGCGCGTCGTGCTCCCTGCGTCCATCCCTCGCCACGCCTTGCCGCACCAACAGCGCTCCCTGCACCTCCGCCTCCCTCCCCAATCCGTCCCATCTCCTCGCCCGCCGCCCTCGCCTGCCATCCTGCCAGCAGAGGTGGCGCCGCCGTTCTCCTGCTCCCGCTGCATTCGCTCACCGGTGAGCATCCTAATCCATCCCATCCGGCCTCGGCCTCGTCCTCGAATTTCGTCTCCTCGCCCGGCGTCCTCCTGCATCCACCGCATCATCGCTCGCCGGTGAGCATCCCTCCCTTCCCACACCTCATCAGGTGTTCTGCCCAGTTCCACCTACTTTCAACTTGTTAATTTTGATTTTTGTTTTTAGCGGATGTAATTTGGTTACTGAATCTCATCCAAACACCCTTAGAATAGTTGCATTAGAACGAAAAATGTAAGCTCACATCATTTGTACTCATCCAAACTCACATAATTTGTAATATTTATTAAGTATCAATAAGTAAAACGGATGATTTACCATGTGACAAATTAATTATTAAAATAAATTGTATTCATCCGTTGTAATGCACGGATATTTTTAAATGATTTACTAGCTGCTGCCATTAGGTAATCTTTCACATTTTTTTACTTACTATGAAATCCAAATCTCTGATTCTTTTCTTTTTACAATTAATGTTTGGTTCAAAACTTGCCCACTAGGTAATCTTTCACATTTTTTTACTTCTGAATCTCTGAATTTTTTTTTACCATTAATGTTTGGTTCAAAACTTGTGGGCTAAACTGAAGAGAGGTGTGCTGAGTGGAGGGAGGTAGCGAACTAGATTAGGACTAAAAAGGAATGAAAGAATGGACTTTAGGCCCAAAACTAAGGAAAAGAACTAAGGAAAATTTTCATTAACTTTTTTAATTAAACTGTATAGTGATCCTAATGTTTCAATTCATTACTTGATTCCTAATTACGGTGGTATCACTATGAAACATTTTTATCTGTTGCAATGCACGGATATTTTTTTTGGGAAATTTAACTATTTGCCACTTTTGGGATATGGCAATTAATGATTTGCCACTCGCTGTCTATGACATGTGGGCTCTCATTTGTCTATGACATGTGGGCCTAGTGGCAAATTGTTAAGCACCACTCGTAAGAGTGGCAAATAGTTAAAAGTCCCATTTTTTTTTCCTTAGTTGTAACTAAATCCTTCACCTGAAGGGAACGGGAGGAGAAGGCGAGGTTAGAGAATCCTAGACGTTCGTTGGTTCTTGGACGGTCTAGTTTCACCCCAACTGCTTAACCTGCAGTCGATGCAACGACTGCACCTGATCCAGGCGTTACACATTCTATCCGGTATCGCGTCGACGACCGCCACACTTGAGCCAGTGGTAGTTATGGCCGAGAAGAGCGTGGCCCCTTCCTCCTTCCTCCTTTGCCTCTCGTCGACGCTTCCCGGACTCCTCCTTCCACCGAAGCGCGCGCCACGCTCGCTACATGGCCGGCGTAGCGCGGAGTCCCATTAGGACTTGAGAGTGATTTCTTCTTTCTGAAATGATTTGGATTGGTTTCGTTTCTTCGGCGTAGCCCGGAGTCCCATTAGGACTTGAGTGATTTCTTCTTTCTGAAATGACTTGGATTGGTTTCGTTTCTTCCGTTGGTGATGAACTGTGGCTCCTTTGATTGGTTTCGTAGCTTTTTCTAGCATTTTATCTGTTGCGGGCAAAACCCCTTACCTCTCCCGTATAACCCATTAGTTTTTGAGTTTTTTTTTTGCGTGATAATAGAGAGCACTGATAGATATTACTCGAAACGAAACGCACTGGTGTGTACTAGCACTTTATTATTTCCAAAGAGTTTGATGGTTTCTTTGCCTACTTGCCTGGATCACGTTAGGTGCGATTTACCTTTAATAATTCAAAATAGATTGATCAGTATCTACGAACAAAAAAAGAAGATAGTAAAATGTTTATTGCACATTTACGATATGGTAGGATTCCAAGCACTGCTTGTTAGTTTGTTAGTTAATAGTAGTTTGTAATCATTTAGATGCCACAATTCAAAGCCTTTCTCAGTTACCCAGTGCATTTTGTACTAGTTTTAAGCAAAATGTTCTTGATCTCTGCGCAGTTGGGGATCCCACTGACTTGCTGATTGCAACTGTCAGTGTGGTGATTGGACTGCATCAGTTGTGGGAATTGAACTGGTCAAGTCTCAGACTAATACAATGCAAGGCATTTTTGCATGTGGTTCAATTTCCTCGGCCCATGGATCATGCTTTAGACCAGCTTGTCTTGCAGTGGATGATCTGAGGCTGTTTTACAAAATAAATTCAGTAACCTGTGGAGCGTACTCGTGGCGTTGGTGTGTGAAAAAACTACATATGAGGACCAATAGAAGGCAAATGGGTACTACGGTGAGAACTAATGCTAGATGGCTATTTGGAGGAGATGGCCGTAGCAGTAGTAATGCAAGGATGGAACGCAGTGAGTCTGCTAACGAAGACATCTTAATCTTCTACTTCCAATTGGACCTACAAACCCGGATACAGGTGAGTTGTTGCTTCCTTACCATCATTTTCTAAAGCGAATAAAGTTACCAATCCAGCCGGCAGCTATTCTTTTTTCACGGATCAATTCCCTAGACTAGTAGCAATCGGCTAACTAAATCTACTATCATGATCATTGCATCATTCTTAGTTGCTAGTCACTGGTTCATGCAACTGTTTGATACTTACCTATGCACGTCCAGCCTAACTATTGAATTTCTTGGTTCTTACTAGTATGCATTGAATATAGAGCAATTTGATGTGGCAAAACAATTGAGGGAAAAACTCACAGAGGTACCAAATGACTTCACTTGAAGATAAATGAATTCATTGTATGAGACTTGCTAAAGAAAATATCCTCCTCTAGATTGAAACAGTGATAATTAGGCAACGTGAAGCTAAAAGAGGCTCATCAAAGACTGAAGCTCAGGACAAAGCTATAAACCTTTTACGCGTGCGGTATGTTAATAGTTTCCATTTCTCCATGACGTTCTAGTGTTATGTAGCATTGGTTCATTTGAGAGGTCACTTAGCTTTATCCATTTGTTTCAGTGCGGATTTGCAAAAGGCCGTTGACAGTGAAAACTATGCTTTGGCAGCTGCACTGCGTGATGAAATTGCTAAACTTGAGGTACAGCAAAACTGTAGTGCACCGGCCATGTGATGGTAATGTGTAAATAACATATTAACTTCAAACATCATGTAGACAGAGTCTCTGGCAGTCTCCGCTAAGGCCCTTGCATATCAAAATGTGAAATATGCATTTCGACTAGGGCAGAAAGTACGCCATAAGGTACACGGTGAGTACTACTGCTATACTACCCACTTCGTATTATTGTTTACACATTATTTCTGAAGCTATCCAGAAAATGGATAACTACTACAAATTTCTTTTCAAACTTTATATAAGAAGTTAATTTTTCATAATTGTCATTATCCTTAAATGTAACATTTGCATGTGTTAAAGCACACTTTGTATCAAATATTAAACTTCAGTGAACATGCTTTAGTTTATCTTCTTAATTTTACATCACCTGCTGAAGGATATAGAGCTGTGATTTGTGGCATGGATCATGTGTGCTGTGAATCCAAGTCATGGATGGAGACAGCAAATGTGGAAAACTTGTCCAAAGGACCGAATCAACCTTTTTATCAAGTAAATGCTGCTTGACTTATTCCAATTTAAGTAGTTCCTCAATGCCCATAGTTCATAGAAATATCATTTCCTTCATGTAGCATCAGTTGTGACTTGTTTATCATGGATGGCGATTATGTGTAATAATACCTACCTGTTCTTGTTCTTAATTTGCAAACTCACTTGTGGAATTGAGATGGTGATATTCATCATTGCCTTTTTCTCCTCCCTTTTGGATTTGTTCGGTATAATCAGGACGTTCATGATGCAATTTTATTAGCCTGCGATTGACTGTTTCTCTATGCAACTAATGCTTACTTTTGGATGATATTGCCCATGCATACTGATGTGTTTGCATAGTTTAGTCTTTTGAGAATTGAGATGCTTAGTGATCCTCTGTGATTCATTGCCGAAATCTTGCAGGTCCTTGTTGATGTATATGCTGATCCAGAACTCCTTGTTGCATATGGTATTGATTTTTCTTTTCCACTGTTTACACTTAGTTTATGAGGCAGTTGACTTTGAGCTATATTTTCACATAAAACATTTATTTCCATATGCTAACTCAGATTTATTACGACTTTATCTTTAGTTATGCTGTTATTAAAGAAGCCTCATCAGGCTATTGTTCAGAAAAATCACCAGAGACAGCTCACTATATTTTTACTCGACCTGAAAAATATAAACTAGCAGGTTCTCTACTCAGTTTATAAATTACCTTTGCTCAGTGAAAATGAACAACTATGTGCTGATTCTCATGTCAAAATAATTCCACTATTTTGATAGACATGACCACTGGTGGAAATTCTATCTTGAGATCTGTAACTTTTAATGAGCAATCTTGTTTTGTGTAAAATGGCAGAAGAAGGCAAGATAGTAGGCTAATTCAGTAGTCAAATGATCAAATCCATCTTCACTTACTGTTTTATGTCTATGATGTGCCATTTTGAGACATGTTATGTCTGTATAATTTCAGTTGCAGAAGAAAATCTTGCAGAGGCTGAAATACCAGAGAAAGTGAGTTTGAGTTCTTCATTTGCTTGGTGGTTTTCATTTTTGGTCAAATTGAACTAATGCTGTCCGCCTGTCCCCCTTTATTTACAGGGAAGATTTGATCACCCCTATATTGAATTTCTGTTTTTTGGCGAGGACACTGCTGGGGACTTCATTCCTATCAAGCAGCTTCGTGAGAAGTATGATCAGCCACGTTATGAAGCTTCTGGGGATGAAGATGACGATGATGGCAGCACGGATAGCTGAAAGGTGAGTTTTTCACTTATAATGAGGCGTTCGTGTAATTGGCAAGTGGACCACAAAATTAATATTATCTGTCCCTGCGTGATACATTCAGGTAGGCAGCAAGAGTTGTTTTGATGCCATTTCCGATGCCTTACCACCGACTGAGTTCCGAAATGGTGGAGGAGCTTGACAGCTTGTTACTATCTGATGTAACTACAGCGGGCTAATGTCAGTGAAGACTGGTGACTGGGCTAACCTGGAACCTGAACAATCCACAGCAATCTGCAATGAGGCAATCTGCATTTGATATATTGATATCTGACCTTGCAGATTCACGATTGAGGATAACACCCATATAGTGGCCAATCCATGAAGCCCTTTACATATACGGTTCTAAAGAAGATCCTTGTGGATTTGCAGTCTGTACTTCCCCAAGTTCTTCTGTAACTGTGTTCCCTCTGATGGGAATTTTGTAGATAAGCTGCATTCATCAAACCTGCAACTCTGCAGCTGCAGAGAAAGCAAAGGGTTGACGTACATCTATTGGAAAGTTGGAATATACTTACGTGGAAAACTGCAAACCACAGAATTTTTGACGCTCGGGGAAAATAACC
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| CDS seq | ATGCAAGGCATTTTTGCATGTGGTTCAATTTCCTCGGCCCATGGATCATGCTTTAGACCAGCTTGTCTTGCAGTGGATGATCTGAGGCTGTTTTACAAAATAAATTCAGTAACCTGTGGAGCGTACTCGTGGCGTTGGTGTGTGAAAAAACTACATATGAGGACCAATAGAAGGCAAATGGGTACTACGGTGAGAACTAATGCTAGATGGCTATTTGGAGGAGATGGCCGTAGCAGTAGTAATGCAAGGATGGAACGCAGTGAGTCTGCTAACGAAGACATCTTAATCTTCTACTTCCAATTGGACCTACAAACCCGGATACAGTATGCATTGAATATAGAGCAATTTGATGTGGCAAAACAATTGAGGGAAAAACTCACAGAGATTGAAACAGTGATAATTAGGCAACGTGAAGCTAAAAGAGGCTCATCAAAGACTGAAGCTCAGGACAAAGCTATAAACCTTTTACGCGTGCGTGCGGATTTGCAAAAGGCCGTTGACAGTGAAAACTATGCTTTGGCAGCTGCACTGCGTGATGAAATTGCTAAACTTGAGACAGAGTCTCTGGCAGTCTCCGCTAAGGCCCTTGCATATCAAAATGTGAAATATGCATTTCGACTAGGGCAGAAAGTACGCCATAAGGTACACGGATATAGAGCTGTGATTTGTGGCATGGATCATGTGTGCTGTGAATCCAAGTCATGGATGGAGACAGCAAATGTGGAAAACTTGTCCAAAGGACCGAATCAACCTTTTTATCAAGTCCTTGTTGATGTATATGCTGATCCAGAACTCCTTGTTGCATATGTTGCAGAAGAAAATCTTGCAGAGGCTGAAATACCAGAGAAAGGAAGATTTGATCACCCCTATATTGAATTTCTGTTTTTTGGCGAGGACACTGCTGGGGACTTCATTCCTATCAAGCAGCTTCGTGAGAAGTATGATCAGCCACGTTATGAAGCTTCTGGGGATGAAGATGACGATGATGGCAGCACGGATAGCTGA
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| Protein seq | MQGIFACGSISSAHGSCFRPACLAVDDLRLFYKINSVTCGAYSWRWCVKKLHMRTNRRQMGTTVRTNARWLFGGDGRSSSNARMERSESANEDILIFYFQLDLQTRIQYALNIEQFDVAKQLREKLTEIETVIIRQREAKRGSSKTEAQDKAINLLRVRADLQKAVDSENYALAAALRDEIAKLETESLAVSAKALAYQNVKYAFRLGQKVRHKVHGYRAVICGMDHVCCESKSWMETANVENLSKGPNQPFYQVLVDVYADPELLVAYVAEENLAEAEIPEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTDS |
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| Function | Clp protease adapter protein ClpF, chloroplastic [UniProtKB/Swiss-Prot:Q67Y99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0172200 | OsNip_08t0172200-01 | Chr08 | 4237020 | 4242584 | + | RAP2018-11-26 | ||
| CDS seq | ATGCAAGGCATTTTTGCATGTGGTTCAATTTCCTCGGCCCATGGATCATGCTTTAGACCAGCTTGTCTTGCAGTGGATGATCTGAGGCTGTTTTACAAAATAAATTCAGTAACCTGTGGAGCGTACTCGTGGCGTTGGTGTGTGAAAAAACTACATATGAGGACCAATAGAAGGCAAATGGGTACTACGGTGAGAACTAATGCTAGATGGCTATTTGGAGGAGATGGCCGTAGCAGTAGTAATGCAAGGATGGAACGCAGTGAGTCTGCTAACGAAGACATCTTAATCTTCTACTTCCAATTGGACCTACAAACCCGGATACAGTATGCATTGAATATAGAGCAATTTGATGTGGCAAAACAATTGAGGGAAAAACTCACAGAGATTGAAACAGTGATAATTAGGCAACGTGAAGCTAAAAGAGGCTCATCAAAGACTGAAGCTCAGGACAAAGCTATAAACCTTTTACGCGTGCGTGCGGATTTGCAAAAGGCCGTTGACAGTGAAAACTATGCTTTGGCAGCTGCACTGCGTGATGAAATTGCTAAACTTGAGACAGAGTCTCTGGCAGTCTCCGCTAAGGCCCTTGCATATCAAAATGTGAAATATGCATTTCGACTAGGGCAGAAAGTACGCCATAAGGTACACGGATATAGAGCTGTGATTTGTGGCATGGATCATGTGTGCTGTGAATCCAAGTCATGGATGGAGACAGCAAATGTGGAAAACTTGTCCAAAGGACCGAATCAACCTTTTTATCAAGTCCTTGTTGATGTATATGCTGATCCAGAACTCCTTGTTGCATATGTTGCAGAAGAAAATCTTGCAGAGGCTGAAATACCAGAGAAAGGAAGATTTGATCACCCCTATATTGAATTTCTGTTTTTTGGCGAGGACACTGCTGGGGACTTCATTCCTATCAAGCAGCTTCGTGAGAAGTATGATCAGCCACGTTATGAAGCTTCTGGGGATGAAGATGACGATGATGGCAGCACGGATAGCTGA
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| Protein seq | MQGIFACGSISSAHGSCFRPACLAVDDLRLFYKINSVTCGAYSWRWCVKKLHMRTNRRQMGTTVRTNARWLFGGDGRSSSNARMERSESANEDILIFYFQLDLQTRIQYALNIEQFDVAKQLREKLTEIETVIIRQREAKRGSSKTEAQDKAINLLRVRADLQKAVDSENYALAAALRDEIAKLETESLAVSAKALAYQNVKYAFRLGQKVRHKVHGYRAVICGMDHVCCESKSWMETANVENLSKGPNQPFYQVLVDVYADPELLVAYVAEENLAEAEIPEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTDS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0172200 | OsNip_08t0172200-02 | Chr08 | 4237040 | 4242574 | + | IsoSeq | ||
| CDS seq | ATGCAAGGCATTTTTGCATGTGGTTCAATTTCCTCGGCCCATGGATCATGCTTTAGACCAGCTTGTCTTGCAGTGGATGATCTGAGGCTGTTTTACAAAATAAATTCAGTAACCTGTGGAGCGTACTCGTGGCGTTGGTGTGTGAAAAAACTACATATGAGGACCAATAGAAGGCAAATGGGTACTACGGTGAGAACTAATGCTAGATGGCTATTTGGAGGAGATGGCCGTAGCAGTAGTAATGCAAGGATGGAACGCAGTGAGTCTGCTAACGAAGACATCTTAATCTTCTACTTCCAATTGGACCTACAAACCCGGATACAGGTCCTTGTTGATGTATATGCTGATCCAGAACTCCTTGTTGCATATGTTGCAGAAGAAAATCTTGCAGAGGCTGAAATACCAGAGAAAGGAAGATTTGATCACCCCTATATTGAATTTCTGTTTTTTGGCGAGGACACTGCTGGGGACTTCATTCCTATCAAGCAGCTTCGTGAGAAGTATGATCAGCCACGTTATGAAGCTTCTGGGGATGAAGATGACGATGATGGCAGCACGGAT
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| Protein seq | MQGIFACGSISSAHGSCFRPACLAVDDLRLFYKINSVTCGAYSWRWCVKKLHMRTNRRQMGTTVRTNARWLFGGDGRSSSNARMERSESANEDILIFYFQLDLQTRIQVLVDVYADPELLVAYVAEENLAEAEIPEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.677885 | 10.971899 | 2.018930 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g07540 | RBH | 9.423159 | 7.641999 | 0.517111 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0172200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0004900 | RBH | 3.065260 | 3.660589 | 8.601970 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0004990 | RBH | 1.801888 | 1.139806 | 5.688226 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0004930 | RBH | 7.100814 | 2.383177 | 8.784642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0004990 | RBH | 1.454762 | 0.061729 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0004710 | RBH | 36.763935 | 3.763360 | 13.635584 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0063600 | RBH | 8.7339205 | 3.8209525 | 1.484404 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004550 | RBH | 1.571184 | 0.254115 | 1.208136 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0069100 | RBH | 7.824004 | 4.10488 | 3.5104385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0004660 | RBH | 1.479462 | 0.176526 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004700 | RBH | 2.937015 | 1.967816 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004530 | RBH | 26.018869 | 1.292811 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0004810 | RBH | 4.065148 | 0.343211 | 1.558399 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004750 | RBH | 2.480685 | 2.816190 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004660 | RBH | 2.501314 | 0.0 | 3.268069 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004620 | RBH | 8.234084 | 10.105006 | 6.613875 |
