Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0034280 | OGI:01097020 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:32405085-32409743 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggggtcttcccttcttattttccctgagcgtagaaaattctgtggtttccagttttccacggaagtaaattccaattttccaatagatgtacgtcaaccctttgcttcctctccagctgcagagttgcaggtttgacgaatgcagcttatctacaaaattcccatcagagggaacacagttacagaagaactaggggaagtacagattgcaaatccataaggatcttctttagaaccgtatacgtaaagggcttcatggattggccactatatatgggtgttaccctcaatcgtgaatctgcaaggtcagatatcagtatatcaaatgcagattgcctcattgcagattgctgtggattgttcaggttccgggttagcccagtcaccagtcttcactgacattagcccgctgtggttacatcagatagtaacaagctccttcatcatttcggaattcagtcggtggtaaggcatcggaaatggcatcaaaacaactcttgctgcctacctgaatgtatcacgcagggacagattatattaagtttgtggtccacttgccaattaaacgaacgcctcattataagtgaaaagctcacctttcagctatccgtgctgccatcatcgtcatcttcatccccagaagcttcataacgtggctgatcatacttctcacgaagctgcttgataggaatgaagtccccagcagtgtcctcgccaaaaaacagaaattcaatataggggtgatcaaatcttccctatttttaaacggggacagcattagttcaatttgaccaaaaatgaaaaccaccaagcaaatgaagaactcaaactcactttctctgatatttcagcttctgcaagattttcttctgcaactgaaattacacagacataacatgtctcaaaatggcgcagcataggcataaaacagtaagtgaagatggatttgatcaattgactactgcatagcctactatcttgccttcttctgccattttacacaaaacaagattgctcattaaaagttacagatctcaagatagaatttccaccagtggtcatgtctatcaaaatagtggaaaagaaaaatcaataccatatgcaacaaggagttctggatcagcatatacatcaacaaggacctgcaagatttcagcaatgaatcacagaggatcactaagcatctcaattctcaaaagactaaattatgcaaacatatcagtaattcagtatgcatgggcactatcgtccaaaagaaagcattaattgcatagagaaacagtcaattgcaggctaataaaattgcatcatgaacggcctgattatacccaaaaaatccaaaagggaggagaaaaaggcaatgatgaatatcaccatctcaaccccataagtgagtttgcaaattaagaacaagaacaggtaggtattattacacataatcgccatccatgatagataagtcacaactgatgctacatgaaggaaatgatatttctatgaactatgggcattgaggaactactaaatcggaataagtcaagcagcatttacttgataaaaaggttgattcggtcctttggacaagttttccacatttgctgtctccatccatgacttggattcacagcacacaggatccatgccacaaatcacagctctatatccttcagcaggtgatgttatcatgtaaaattaagaagagaaactaaagtgtgttcactgaagttaatatttgatataaagtgtgcttcaacacatgcaaatgttccatttaaggataatggcaattatgaaaaattaacttttcatataaagtttgaaaagaaattgtagtagttatccattttctgaacagcttcagaaataatgtgtgaacaacaatacgaagtaggtagtatagcagtactcaccatgtaccttatgacgtactttctgccctagtcgaaatgcatattccacattttgatatgcaagggccttagcggagactgccagagactctgtctacatgatgtttgaagttaatatgttattaacacattaccatcacatggtcagtgcactacagttttgttgtacctcaagtttagcaatttcatcacgcagtgcagctgccaaagcataattttcactgtcaacagccttttgcaaatccgcactgaaacaaatggataaagctaagtgatctactgatctctcaaatgaaccaatgctacataacactggaacatcatggagaaatggaaactattaacataccgcacgcgtaaaaggtttatagctttgtcctgagcttcagtctttgatgagcctcttttagcttcacgttgcctaattatctctgtttcaatctagacgaggatattttctttagcaagcctcatacaatgaattcatttatcttcaagtgaaatcatttggtacctctgtgagtttttccctcaattgttttgccacatcaaattgctctatattcaatgcatactggtaagaaccaagaaattaatagttaggctggacgtgcatagataagtatcaaacatttccctggaccagtagccagcaactaagaatgatgcaattatcatgatggtagatttcattagccgattgctactagtctatggaattgatccgtgaaaaaagaatcattgccggctggattggtaactttattcgctttagaaaatgatggtaaggaagcaataactcacctgtattcgggtttgtaggtccaattggaagtagaagattaagatgtcttcgttagcagactcactgcgttccagccttgcattactactgctacggtcatctcctccaaatagccatttagcgttagttctcactgtagtacccatttgccttctattggtcctcatatgtagttttttcacacaccaacgccatgagtacgctccacatgttattgaatttattttgtaaaacaacctcagatcatccactgcaagacaagctggtctaaagcatgatccatggggcgaggaaattgaaccacatgcaaaaatgccttgcattgtattggtatgagatttgaccagttcaattcccacaactgatgtagtccaatcaccacactgacagttgcaatcagcaagccagtggcatctccagctgcgcagagaacaaaaacattttgcttaaaactagtacaaaatgtactaggtaactaagaaaggctttgaattgtggcatctaaataattacaaactactattaactaacaaactaacaagtagtgcctggaaccctaccatatcgtaaatgtgcaataaacattttactatcttctttttttttgtccgtagatactgatcaatctattctgaattattgaaggtaaatcgcacctaacgtggtccaggcgagtaagcaaagaaaccctcaaactctttggaaataataaagtgctagaacctaccagtacgctttgtttcgagtaatatctatcagtgctctctactatcacgcaaaaaaacaaaatcctcaaaaactaatgggttatacgggagaggtaaggggttgcccgcagcaagataaaacgccagaaaaaaaaaagctacgaaaccaatcaaagaagccacagttcatcaccaaccgaagaaacgaaaccaatccaacccttttcagaaggaagaaatcctaatgggactccggtctacgccgccggccatgtagcgagcgtggagagaaggatagataccttttctggccgaggcggcgcgcgcttcggtgggaggaggaggcggggaagcgtcgacgagtctcggcgaacggggaagaaagggggagggccgcgcgcttctcggccgtaactaccactggctcaaagtgtggcggtcgtcgacgggataccggatagaatgtgtgacctggatcaggagtgcatcgactgcaggttaagcacttgggtgaaactgaccgtccaagaaccagcgaacgtttaggattctctgaaagcttcccttcatcaagatttggttacaattttggcgcaattgcatctgcgcccccactttcaaacccaattgctgttttatcttcactttttagggacatgtataccctctgcatccagcaacatcgtgcaggggaggacctggaacaagggacggggaggagggcgccgtaggcgccgacgtcgacgtcgagcaggatggggtcgtcgccggccacgggagcagtagcagcaaaagcgatggtggggacaggcggaggcgggggctgacgacgatgcctcggcgtggaagccagcggccacgggagcagcagcagcagccgccgccgtcgcccgcacgccgttgccgcgcgcacgccctcgccgccgcccgccctcgccgcggccgccgccgtcgcccgcacgccctcgccgcggctgccgcccccgagcgcacgcccttgccgccgcccgccctcgccgcagccgccgccgcgccgcgcgcaagctctcgccgcccgcccgccctcgccgcggcggccgccctcgccctcgccgtcaccgcgccttccgccggagccgccgccgtcgccgcgccttccgccggagccgccgccgtcgccgcgcctcccgccggagccgcgcacgccgctgccggaacggtcgccgtcgctgcacggtgcttgacctgagcagagctg
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| CDS seq | atgcaaggcatttttgcatgtggttcaatttcctcgccccatggatcatgctttagaccagcttgtcttgcagtggatgatctgaggttgttttacaaaataaattcaataacatgtggagcgtactcatggcgttggtgtgtgaaaaaactacatatgaggaccaatagaaggcaaatgggtactacagtgagaactaacgctaaatggctatttggaggagatgaccgtagcagtagtaatgcaaggctggaacgcagtgagtctgctaacgaagacatcttaatcttctacttccaattggacctacaaacccgaatacagtatgcattgaatatagagcaatttgatgtggcaaaacaattgagggaaaaactcacagagattgaaacagagataattaggcaacgtgaagctaaaagaggctcatcaaagactgaagctcaggacaaagctataaaccttttacgcgtgcgtgcggatttgcaaaaggctgttgacagtgaaaattatgctttggcagctgcactgcgtgatgaaattgctaaacttgagacagagtctctggcagtctccgctaaggcccttgcatatcaaaatgtggaatatgcatttcgactagggcagaaagtacgtcataaggtacatggtgagtactgctatactacctacttcgtattgttgttcacacattatttc
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| Protein seq | MQGIFACGSISSPHGSCFRPACLAVDDLRLFYKINSITCGAYSWRWCVKKLHMRTNRRQMGTTVRTNAKWLFGGDDRSSSNARLERSESANEDILIFYFQLDLQTRIQYALNIEQFDVAKQLREKLTEIETEIIRQREAKRGSSKTEAQDKAINLLRVRADLQKAVDSENYALAAALRDEIAKLETESLAVSAKALAYQNVEYAFRLGQKVRHKVHGEYCYTTYFVLLFTHYF |
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| Function | Clp protease adapter protein ClpF, chloroplastic [UniProtKB/Swiss-Prot:Q67Y99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0034280 | OsKeNa_01g0034280.02 | Chr01 | 32405085 | 32409743 | - | NAM | ||
| CDS seq | atgataacatcacctgctgaaggatatagagctgtgatttgtggcatggatcctgtgtgctgtgaatccaagtcatggatggagacagcaaatgtggaaaacttgtccaaaggaccgaatcaacctttttatcaagtccttgttgatgtatatgctgatccagaactccttgttgcatatgttgcagaagaaaatcttgcagaagctgaaatatcagagaaaggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagc
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| Protein seq | MITSPAEGYRAVICGMDPVCCESKSWMETANVENLSKGPNQPFYQVLVDVYADPELLVAYVAEENLAEAEISEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTDS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0034280 | OsKeNa_01g0034280.07 | Chr01 | 32405085 | 32408230 | - | NAM | ||
| CDS seq | atgataacatcacctgctgaaggatatagagctgtgatttgtggcatggatcctgtgtgctgtgaatccaagtcatggatggagacagcaaatgtggaaaacttgtccaaaggaccgaatcaacctttttatcaagtccttgttgatgtatatgctgatccagaactccttgttgcatatgttgcagaagaaaatcttgcagaagctgaaatatcagagaaaggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagctga
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| Protein seq | MITSPAEGYRAVICGMDPVCCESKSWMETANVENLSKGPNQPFYQVLVDVYADPELLVAYVAEENLAEAEISEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTDS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0034280 | OsKeNa_01g0034280.04 | Chr01 | 32405085 | 32409743 | - | NAM | ||
| CDS seq | atgtatatgctgatccagaactccttgttgcatatgttgcagaagaaaatcttgcagaagctgaaatatcagagaaaggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagctgaaagg
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| Protein seq | MYMLIQNSLLHMLQKKILQKLKYQRKEDLITPILNFCFLARTLLGTSFLSSSFVRSMISHVMKLLGMKMTMMAARIAER |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0034280 | OsKeNa_01g0034280.01 | Chr01 | 32405085 | 32409743 | - | NAM | ||
| CDS seq | atggtgagtactgctatactacctacttcgtccttgttgatgtatatgctgatccagaactccttgttgcatatgttgcagaagaaaatcttgcagaagctgaaatatcagagaaaggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagctgaaagg
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| Protein seq | MVSTAILPTSSLLMYMLIQNSLLHMLQKKILQKLKYQRKEDLITPILNFCFLARTLLGTSFLSSSFVRSMISHVMKLLGMKMTMMAARIAER |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0034280 | OsKeNa_01g0034280.06 | Chr01 | 32407741 | 32409743 | - | NAM | ||
| CDS seq | atgcaaggcatttttgcatgtggttcaatttcctcgccccatggatcatgctttagaccagcttgtcttgcagtggatgatctgaggttgttttacaaaataaattcaataacatgtggagcgtactcatggcgttggtgtgtgaaaaaactacatatgaggaccaatagaaggcaaatgggtactacagtgagaactaacgctaaatggctatttggaggagatgaccgtagcagtagtaatgcaaggctggaacgcagtgagtctgctaacgaagacatcttaatcttctacttccaattggacctacaaacccgaatacaggtgagttattgcttccttaccatcattttc
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| Protein seq | MQGIFACGSISSPHGSCFRPACLAVDDLRLFYKINSITCGAYSWRWCVKKLHMRTNRRQMGTTVRTNAKWLFGGDDRSSSNARLERSESANEDILIFYFQLDLQTRIQVSYCFLTIIF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0034280 | OsKeNa_01g0034280.03 | Chr01 | 32405085 | 32409743 | - | NAM | ||
| CDS seq | atggatcctgtgtgctgtgaatccaagtcatggatggagacagcaaatgtggaaaacttgtccaaaggaccgaatcaacctttttatcaagtccttgttgatgtatatgctgatccagaactccttgttgcatatgttgcagaagaaaatcttgcagaagctgaaatatcagagaaaggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagc
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| Protein seq | MDPVCCESKSWMETANVENLSKGPNQPFYQVLVDVYADPELLVAYVAEENLAEAEISEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTDS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0034280 | OsKeNa_01g0034280.05 | Chr01 | 32406390 | 32409743 | - | NAM | ||
| CDS seq | atgcaaggcatttttgcatgtggttcaatttcctcgccccatggatcatgctttagaccagcttgtcttgcagtggatgatctgaggttgttttacaaaataaattcaataacatgtggagcgtactcatggcgttggtgtgtgaaaaaactacatatgaggaccaatagaaggcaaatgggtactacagtgagaactaacgctaaatggctatttggaggagatgaccgtagcagtagtaatgcaaggctggaacgcagtgagtctgctaacgaagacatcttaatcttctacttccaattggacctacaaacccgaatacagtatgcattgaatatagagcaatttgatgtggcaaaacaattgagggaaaaactcacagagattgaaacagagataattaggcaacgtgaagctaaaagaggctcatcaaagactgaagctcaggacaaagctataaaccttttacgcgtgcgtgcggatttgcaaaaggctgttgacagtgaaaattatgctttggcagctgcactgcgtgatgaaattgctaaacttgagacagagtctctggcagtctccgctaaggcccttgcatatcaaaatgtggaatatgcatttcgactagggcagaaagtacgtcataaggtacatggtgagtactgctatactacctacttcgtattgttgttcacacattatttc
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| Protein seq | MQGIFACGSISSPHGSCFRPACLAVDDLRLFYKINSITCGAYSWRWCVKKLHMRTNRRQMGTTVRTNAKWLFGGDDRSSSNARLERSESANEDILIFYFQLDLQTRIQYALNIEQFDVAKQLREKLTEIETEIIRQREAKRGSSKTEAQDKAINLLRVRADLQKAVDSENYALAAALRDEIAKLETESLAVSAKALAYQNVEYAFRLGQKVRHKVHGEYCYTTYFVLLFTHYF
More
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0034280 | OsKeNa_01g0034280.08 | Chr01 | 32405133 | 32408974 | - | IsoSeq | ||
| CDS seq | atgaggcaatctgcatttgatatactgatatctgaccttgcagattcacgattgagggtaacacccatatatagtggccaatccatgaagccctttacgtatacggttctaaagaagatccttatggatttgcaatctgtacttcccctagttctt |
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| Protein seq | MRQSAFDILISDLADSRLRVTPIYSGQSMKPFTYTVLKKILMDLQSVLPLVL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 32405959 | 32406181 | - | OsKeNa_01g0034280.08 | OsKeNa_01g0034280.08,OsKeNa_01g0034280.07,OsKeNa_01g0034280.03,OsKeNa_01g0034280.01,OsKeNa_01g0034280.04,OsKeNa_01g0034280.02 | All |
| RI | Chr01 | 32406636 | 32407088 | - | OsKeNa_01g0034280.07,OsKeNa_01g0034280.02 | OsKeNa_01g0034280.08,OsKeNa_01g0034280.07,OsKeNa_01g0034280.02,OsKeNa_01g0034280.03 | All |
| A5 | Chr01 | 32406226 | 32406969 | - | OsKeNa_01g0034280.07,OsKeNa_01g0034280.02 | OsKeNa_01g0034280.07,OsKeNa_01g0034280.02,OsKeNa_01g0034280.01 | All |
| A5 | Chr01 | 32406226 | 32407002 | - | OsKeNa_01g0034280.07,OsKeNa_01g0034280.02 | OsKeNa_01g0034280.04,OsKeNa_01g0034280.07,OsKeNa_01g0034280.02 | All |
| A5 | Chr01 | 32407568 | 32408144 | - | OsKeNa_01g0034280.07,OsKeNa_01g0034280.08,OsKeNa_01g0034280.05 | OsKeNa_01g0034280.08,OsKeNa_01g0034280.05,OsKeNa_01g0034280.07,OsKeNa_01g0034280.01,OsKeNa_01g0034280.03,OsKeNa_01g0034280.04,OsKeNa_01g0034280.02 | All |
| A5 | Chr01 | 32406226 | 32407002 | - | OsKeNa_01g0034280.01 | OsKeNa_01g0034280.01,OsKeNa_01g0034280.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.943760 | 1.094892 | 1.321478 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0172200 | SBH | 12.677885 | 10.971899 | 2.018930 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g55880 | RBH | 2.426498 | 1.364876 | 0.185629 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0172200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034750 | RBH | 1.493869 | 0.000000 | 1.615308 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0004990 | RBH | 1.801888 | 1.139806 | 5.688226 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0034680 | RBH | 1.080042 | 0.000000 | 4.359392 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0034010 | RBH | 0.342707 | 0.094409 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0033750 | RBH | 15.629657 | 1.783627 | 10.556065 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0534800 | SBH | 3.5990775 | 1.9643345 | 2.850724 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0033500 | RBH | 1.120479 | 0.155583 | 0.757777 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0530300 | RBH | 6.702926 | 5.2628705 | 11.107777 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0033650 | RBH | 0.780988 | 0.136787 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0033700 | RBH | 1.501602 | 2.560520 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033960 | RBH | 17.019127 | 7.843780 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0034000 | RBH | 1.688378 | 0.227142 | 1.119628 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033850 | RBH | 0.688770 | 2.390914 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G034300 | RBH | 1.094612 | 0.000000 | 1.296480 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033960 | RBH | 5.061421 | 14.576470 | 1.931420 |
