Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0010770 | OGI:07032770 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:11371397-11372290 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaacatcgctcttcactgaagagctatagtcatcttggtcatcgtagtacttggaccacagcatgatgcctccgtatttccctgagctcttgatcactggaagcacctgtgacttgagatcatctgctgggatgaaaccgctcccagccgcctggggagatgcaggaaggccaagaaaaatctgctttgctgggactgaaagccactgcttccatgcatcagcaagattagaggtgctgcctgaactgtactggcagggagggttgttgtagaactgcacccagacatagtcgaagagcccagtgttgagagcatcaccgatccaggcatcagggaatgggcactgtggcgcagccgtcaggtataccctccttccagagttactgtaccctttcaggtacctggcaagatcatcccagtgctggttggtgccgccctcaatgtcgaagtcaatgccgtcaaggaccgcgtcacctagagggcgagaagacgactggcctcccaggaagttgttccacaggtatgttgcgacattcttggcatcctctgatgatgaaaggtagtagcttcctgcccctccgcctatggagagcatgaccttgactccgcggctctggcacgacttgatgtcggagctctggctggcgcagccgccattggttgggccacagtggcctgccaggttgaagactggtggctggccattgccgaaggccgcgaggaaggcgatgttgacgaacttgtagttgccagtggcgcaggtgtctgccagtgtgccctccccgttgttctggccccagtagatagcaatgctaccggcttgtgaactgacgaattgcgaagcaactgctgcgatgagcagcagctgtatcagggatgatttgttagccat
More
|
||||||||||
| CDS seq | atggctaacaaatcatccctgatacagctgctgctcatcgcagcagttgcttcgcaattcgtcagttcacaagccggtagcattgctatctactggggccagaacaacggggagggcacactggcagacacctgcgccactggcaactacaagttcgtcaacatcgccttcctcgcggccttcggcaatggccagccaccagtcttcaacctggcaggccactgtggcccaaccaatggcggctgcgccagccagagctccgacatcaagtcgtgccagagccgcggagtcaaggtcatgctctccataggcggaggggcaggaagctactacctttcatcatcagaggatgccaagaatgtcgcaacatacctgtggaacaacttcctgggaggccagtcgtcttctcgccctctaggtgacgcggtccttgacggcattgacttcgacattgagggcggcaccaaccagcactgggatgatcttgccaggtacctgaaagggtacagtaactctggaaggagggtatacctgacggctgcgccacagtgcccattccctgatgcctggatcggtgatgctctcaacactgggctcttcgactatgtctgggtgcagttctacaacaaccctccctgccagtacagttcaggcagcacctctaatcttgctgatgcatggaagcagtggctttcagtcccagcaaagcagatttttcttggccttcctgcatctccccaggcggctgggagcggtttcatcccagcagatgatctcaagtcacaggtgcttccagtgatcaagagctcagggaaatacggaggcatcatgctgtggtccaagtactacgatgaccaagatgactatagctcttcagtgaagagcgatgtttaa
More
|
||||||||||
| Protein seq | MANKSSLIQLLLIAAVASQFVSSQAGSIAIYWGQNNGEGTLADTCATGNYKFVNIAFLAAFGNGQPPVFNLAGHCGPTNGGCASQSSDIKSCQSRGVKVMLSIGGGAGSYYLSSSEDAKNVATYLWNNFLGGQSSSRPLGDAVLDGIDFDIEGGTNQHWDDLARYLKGYSNSGRRVYLTAAPQCPFPDAWIGDALNTGLFDYVWVQFYNNPPCQYSSGSTSNLADAWKQWLSVPAKQIFLGLPASPQAAGSGFIPADDLKSQVLPVIKSSGKYGGIMLWSKYYDDQDDYSSSVKSDV |
||||||||||
| Function | Acidic endochitinase [UniProtKB/Swiss-Prot:P29060] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0010770 | OsKeNa_07g0010770.01 | Chr07 | 11371397 | 11372290 | - | NAM | ||
| CDS seq | atggctaacaaatcatccctgatacagctgctgctcatcgcagcagttgcttcgcaattcgtcagttcacaagccggtagcattgctatctactggggccagaacaacggggagggcacactggcagacacctgcgccactggcaactacaagttcgtcaacatcgccttcctcgcggccttcggcaatggccagccaccagtcttcaacctggcaggccactgtggcccaaccaatggcggctgcgccagccagagctccgacatcaagtcgtgccagagccgcggagtcaaggtcatgctctccataggcggaggggcaggaagctactacctttcatcatcagaggatgccaagaatgtcgcaacatacctgtggaacaacttcctgggaggccagtcgtcttctcgccctctaggtgacgcggtccttgacggcattgacttcgacattgagggcggcaccaaccagcactgggatgatcttgccaggtacctgaaagggtacagtaactctggaaggagggtatacctgacggctgcgccacagtgcccattccctgatgcctggatcggtgatgctctcaacactgggctcttcgactatgtctgggtgcagttctacaacaaccctccctgccagtacagttcaggcagcacctctaatcttgctgatgcatggaagcagtggctttcagtcccagcaaagcagatttttcttggccttcctgcatctccccaggcggctgggagcggtttcatcccagcagatgatctcaagtcacaggtgcttccagtgatcaagagctcagggaaatacggaggcatcatgctgtggtccaagtactacgatgaccaagatgactatagctcttcagtgaagagcgatgtttaa
More
|
|||||||
| Protein seq | MANKSSLIQLLLIAAVASQFVSSQAGSIAIYWGQNNGEGTLADTCATGNYKFVNIAFLAAFGNGQPPVFNLAGHCGPTNGGCASQSSDIKSCQSRGVKVMLSIGGGAGSYYLSSSEDAKNVATYLWNNFLGGQSSSRPLGDAVLDGIDFDIEGGTNQHWDDLARYLKGYSNSGRRVYLTAAPQCPFPDAWIGDALNTGLFDYVWVQFYNNPPCQYSSGSTSNLADAWKQWLSVPAKQIFLGLPASPQAAGSGFIPADDLKSQVLPVIKSSGKYGGIMLWSKYYDDQDDYSSSVKSDV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.143697 | 0.0 | 0.215067 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0632000 | SBH | 0.0 | 0.0 | 13.172645 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g19040 | RBH | 0.0 | 0.492119 | 0.174095 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0632000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010800 | RBH | 0.212501 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040560 | RBH | 0.0 | 7.754455 | 1.146925 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010750 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0010660 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010690 | RBH | 0.0 | 3.862528 | 0.887892 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0199800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0011160 | RBH | 0.162341 | 0.0 | 0.042453 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0200200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010640 | RBH | 0.036821 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010650 | RBH | 0.0 | 1.473394 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0010960 | RBH | 0.0 | 0.0 | 0.268590 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0010730 | RBH | 0.066033 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010710 | RBH | 0.350746 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0010490 | RBH | 0.0 | 0.0 | 0.877982 |
