Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0632000 | OGI:07072720 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:26215095-26216256 | ||||||||
| Gene Symbol | SMCP1, OsSMCP1, - | ||||||||||
| DNA seq | ACTCACCAGCGAGTACAAGCTACTCCTTCCTGCAAAGGAGATCATCAATGGCGCTTACTTTTACGCGCCATAGCTTGGTCGTCATTGTGGGCGCGCTTCTTCTCCAGCTCTTCTTCCTCGCCGGCTTGGCCCCGGCGGCGGCGGCTGCGGGGCCGACGGGGCAGGTGACGGTGTTCTGGGGCCGGAACAAGGACGAGGGGTCTCTCCGGGAGGCGTGCGACACCGGCTTGTACACCATGGTCGTCATGTCCTTCCTCAACGTCTACGGCGCCCGCGGCGGCGAGTACCGCCTCGACCTCGCCGGACACCCGGTGGGCTGCATCGGCGGCGACGTCAAGCACTGCCAGCGCAAGGGCGTCCTCGTCTCCCTCGCCATCGGCGGCGGCGCCTACTCGCTCCCGACCAACCAGTCGGCGCTCGATCTCTTCGAACACCTCTGGAACACCTACCTCGGCGGCGGCGGCGGCAAGGGCGCCGTGGCGGCGGCGCGGCCGTTCGGCGACGCCGTGCTCGACGGCGTCGACTTCTTCCTCGACCGCGCCACGCCGGCGGAGCGCTACGACGTGCTCGCCACGGAGCTCGCCAAGCGCGGCAAGCCGCCGCGCCGCGCGCTGCACCTGACGGCCACGACGCGGTGCGCGTTCCCGGACCGCGGCGCCGCGCGGGCGCTCGCCACGGGCGCCTTCGAGCGCGTCCACGTGCGGTTCTACGGCGGCGGCGGCGGCGGCGACGACAACTGCACCGTGTACTGGGAGGACGCGTGGGACAGGTGGACGGCGGCGTACCCGCGCAGCCGGATCTACTTCGGCCTGCCGGCGGCGCCGGCGGTGGCGGAGGAGGAGCAGGACGGCCGGAGCGGGTACGTCTACCCCAAGACGCTCTACTACCGCTACGTGCCGGAGTTGCAGAAGGCGGCCAACTACGGCGGCTTCATGATCTGGGATCGCTACAGCGACAAGCAGAGCGGGTACAGTGGCTACGTCAAGAACTGGGCTTGAGCCTGTACGTTCGTTGCATTGCGTTCACCTTAGCAAAATATTTCATTTCATCACTTTATGATGTACTAGTACTTCAATTTGATCTATGCAACGCGTATATAGCAGATGTAAGTGAAAGAACAAGTCGATCGAGAGATCAATCTCCGTGCAAGAATACAACAGTT
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| CDS seq | ATGGCGCTTACTTTTACGCGCCATAGCTTGGTCGTCATTGTGGGCGCGCTTCTTCTCCAGCTCTTCTTCCTCGCCGGCTTGGCCCCGGCGGCGGCGGCTGCGGGGCCGACGGGGCAGGTGACGGTGTTCTGGGGCCGGAACAAGGACGAGGGGTCTCTCCGGGAGGCGTGCGACACCGGCTTGTACACCATGGTCGTCATGTCCTTCCTCAACGTCTACGGCGCCCGCGGCGGCGAGTACCGCCTCGACCTCGCCGGACACCCGGTGGGCTGCATCGGCGGCGACGTCAAGCACTGCCAGCGCAAGGGCGTCCTCGTCTCCCTCGCCATCGGCGGCGGCGCCTACTCGCTCCCGACCAACCAGTCGGCGCTCGATCTCTTCGAACACCTCTGGAACACCTACCTCGGCGGCGGCGGCGGCAAGGGCGCCGTGGCGGCGGCGCGGCCGTTCGGCGACGCCGTGCTCGACGGCGTCGACTTCTTCCTCGACCGCGCCACGCCGGCGGAGCGCTACGACGTGCTCGCCACGGAGCTCGCCAAGCGCGGCAAGCCGCCGCGCCGCGCGCTGCACCTGACGGCCACGACGCGGTGCGCGTTCCCGGACCGCGGCGCCGCGCGGGCGCTCGCCACGGGCGCCTTCGAGCGCGTCCACGTGCGGTTCTACGGCGGCGGCGGCGGCGGCGACGACAACTGCACCGTGTACTGGGAGGACGCGTGGGACAGGTGGACGGCGGCGTACCCGCGCAGCCGGATCTACTTCGGCCTGCCGGCGGCGCCGGCGGTGGCGGAGGAGGAGCAGGACGGCCGGAGCGGGTACGTCTACCCCAAGACGCTCTACTACCGCTACGTGCCGGAGTTGCAGAAGGCGGCCAACTACGGCGGCTTCATGATCTGGGATCGCTACAGCGACAAGCAGAGCGGGTACAGTGGCTACGTCAAGAACTGGGCTTGA
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| Protein seq | MALTFTRHSLVVIVGALLLQLFFLAGLAPAAAAAGPTGQVTVFWGRNKDEGSLREACDTGLYTMVVMSFLNVYGARGGEYRLDLAGHPVGCIGGDVKHCQRKGVLVSLAIGGGAYSLPTNQSALDLFEHLWNTYLGGGGGKGAVAAARPFGDAVLDGVDFFLDRATPAERYDVLATELAKRGKPPRRALHLTATTRCAFPDRGAARALATGAFERVHVRFYGGGGGGDDNCTVYWEDAWDRWTAAYPRSRIYFGLPAAPAVAEEEQDGRSGYVYPKTLYYRYVPELQKAANYGGFMIWDRYSDKQSGYSGYVKNWA |
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| Function | Xylanase inhibitor protein 1 [UniProtKB/Swiss-Prot:Q8L5C6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0632000 | Os07t0632000-01 | Chr07 | 26215095 | 26216256 | + | irgsp1_rep | ||
| CDS seq | ATGGCGCTTACTTTTACGCGCCATAGCTTGGTCGTCATTGTGGGCGCGCTTCTTCTCCAGCTCTTCTTCCTCGCCGGCTTGGCCCCGGCGGCGGCGGCTGCGGGGCCGACGGGGCAGGTGACGGTGTTCTGGGGCCGGAACAAGGACGAGGGGTCTCTCCGGGAGGCGTGCGACACCGGCTTGTACACCATGGTCGTCATGTCCTTCCTCAACGTCTACGGCGCCCGCGGCGGCGAGTACCGCCTCGACCTCGCCGGACACCCGGTGGGCTGCATCGGCGGCGACGTCAAGCACTGCCAGCGCAAGGGCGTCCTCGTCTCCCTCGCCATCGGCGGCGGCGCCTACTCGCTCCCGACCAACCAGTCGGCGCTCGATCTCTTCGAACACCTCTGGAACACCTACCTCGGCGGCGGCGGCGGCAAGGGCGCCGTGGCGGCGGCGCGGCCGTTCGGCGACGCCGTGCTCGACGGCGTCGACTTCTTCCTCGACCGCGCCACGCCGGCGGAGCGCTACGACGTGCTCGCCACGGAGCTCGCCAAGCGCGGCAAGCCGCCGCGCCGCGCGCTGCACCTGACGGCCACGACGCGGTGCGCGTTCCCGGACCGCGGCGCCGCGCGGGCGCTCGCCACGGGCGCCTTCGAGCGCGTCCACGTGCGGTTCTACGGCGGCGGCGGCGGCGGCGACGACAACTGCACCGTGTACTGGGAGGACGCGTGGGACAGGTGGACGGCGGCGTACCCGCGCAGCCGGATCTACTTCGGCCTGCCGGCGGCGCCGGCGGTGGCGGAGGAGGAGCAGGACGGCCGGAGCGGGTACGTCTACCCCAAGACGCTCTACTACCGCTACGTGCCGGAGTTGCAGAAGGCGGCCAACTACGGCGGCTTCATGATCTGGGATCGCTACAGCGACAAGCAGAGCGGGTACAGTGGCTACGTCAAGAACTGGGCTTGA
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| Protein seq | MALTFTRHSLVVIVGALLLQLFFLAGLAPAAAAAGPTGQVTVFWGRNKDEGSLREACDTGLYTMVVMSFLNVYGARGGEYRLDLAGHPVGCIGGDVKHCQRKGVLVSLAIGGGAYSLPTNQSALDLFEHLWNTYLGGGGGKGAVAAARPFGDAVLDGVDFFLDRATPAERYDVLATELAKRGKPPRRALHLTATTRCAFPDRGAARALATGAFERVHVRFYGGGGGGDDNCTVYWEDAWDRWTAAYPRSRIYFGLPAAPAVAEEEQDGRSGYVYPKTLYYRYVPELQKAANYGGFMIWDRYSDKQSGYSGYVKNWA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0632000 | RBH | 0.0 | 0.0 | 13.172645 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43820 | RBH | 0.0 | 0.0 | 3.314477 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024370 | RBH | 0.0 | 0.0 | 7.264242 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024420 | RBH | 0.0 | 0.0 | 1.629080 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024290 | RBH | 0.0 | 0.0 | 11.492111 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0024210 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024340 | SBH | 153.817780 | 2.098911 | 76.197052 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0430400 | RBH | 0.020839 | 0.13486 | 0.0332455 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024870 | RBH | 0.0 | 0.0 | 1.831864 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0441700 | RBH | 0.039915 | 0.0129835 | 0.0874735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024190 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024360 | RBH | 0.0 | 0.0 | 5.482789 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0024120 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G024090 | RBH | 0.0 | 0.0 | 2.444073 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0024110 | RBH | 0.0 | 0.0 | 11.002591 |
